Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

74910055 .. 74912062

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52739

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCAGATTCTCTATCTCTTCCTCTATGTGAAAAAACCAGTGTTAAAGTTTGTACACTGCGGAGAGCCCTAGAAATTGTAATTTCAGTCCTCTTCATTTGTCTCCTTGCTTATCGTCTCTTCTCTCTCACTGACCATGGCATTCCATGGCTTCTCGCCTTCCTCTGCGAGTCTTGGTTTGCCATCAATTGGGTTCTCAACCTCATCACCGTATGGACTCCCATGGATTACAAAACGTACCCCAACAATCTCTTGCTACAGGTGCCGGAGCTTCCTGCGGTGGACCTGTTTGTATCAACGGCAGATCCAGTGCTAGAGCCGCTTAACGTCATGGTGAACACTGTCCTGTCTTTGCTGGCGGTTGATTACCCAGCTCATAAGCTAGATTGCTACGTATCCGATGACGGGTGTTCCCCCCTCACCCTTTTTTCTCTCATTGAAGCCTCAAAGTTTGCTAGGATTTGGGTTCCCTTCTGTAAAAAGCATGGCATTCAAGTAAGGGCACCTTTCAGATACTTCTCTGCGGACGAGTTCACATTGCGAAGTGATAGTACACCGGAGTTGCTTCTAGAACGGACAAAAGTGAAGGATGAGTATGAAAATCTCTGCCAAAAGATTAAAGATGCAGCCATCATTCGGTACCCCTTGATATTTCTGAAGACTATGCAACTTTTGCCCACACAGACTAATAACCATCCTACAGTGATCAAGGTAATATGGGAGAACAAACAAAGGCTTTCAAATGGATTACCACATTTAGTTTATGTAGCCCGAGAAAAGCGCCTGAATCACCCACATCATTACAAAGCCGGGGCAATGAATGTTTTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

277

Amino Acids

31.73

Weight (kDa)

8.07

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	94 - 277	2.4e-46	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	639
AccB1I	GGYRCC	3 cut(s)	262, 502, 639
AccB7I	CCANNNNNTGG	1 cut(s)	189
AciI	CCGC	5 cut(s)	61, 278, 320, 359, 524
AclWI	GGATC	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	677
AfaI	GTAC	4 cut(s)	55, 239, 553, 641
AfiI	CCNNNNNNNGG	3 cut(s)	189, 405, 636
AgsI	TTSAA	3 cut(s)	440, 494, 741
AluBI	AGCT	3 cut(s)	271, 374, 382
AluI	AGCT	3 cut(s)	271, 374, 382
Alw26I	GTCTC	2 cut(s)	107, 122
AlwI	GGATC	1 cut(s)	299
Ama87I	CYCGRG	1 cut(s)	771
ApeKI	GCWGC	1 cut(s)	626
Asp718I	GGTACC	1 cut(s)	639
AspLEI	GCGC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	283
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	4 cut(s)	199, 346, 412, 782
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	505
BanI	GGYRCC	3 cut(s)	262, 502, 639
BanII	GRGCYC	1 cut(s)	70
BarI	GAAGNNNNNNTAC	2 cut(s)	535, 567
BbsI	GAAGAC	1 cut(s)	665
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	3 cut(s)	191, 638, 702
BceAI	ACGGC	1 cut(s)	315
BciVI	GTATCC	1 cut(s)	406
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	107, 122
BfaI	CTAG	5 cut(s)	71, 314, 383, 456, 569
BfmI	CTRYAG	2 cut(s)	257, 699
BfoI	RGCGCY	1 cut(s)	784
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	2 cut(s)	320, 627
BlsI	GCNGC	2 cut(s)	321, 628
Bme1390I	CCNGG	1 cut(s)	811
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	4 cut(s)	264, 468, 504, 641
BmrFI	CCNGG	1 cut(s)	811
BmsI	GCATC	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	665
BpuMI	CCSGG	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	4 cut(s)	136, 146, 222, 810
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 405, 636
Bse1I	ACTGG	2 cut(s)	39, 308
Bse3DI	GCAATG	2 cut(s)	536, 822
BseDI	CCNNGG	4 cut(s)	136, 146, 222, 810
BseGI	GGATG	2 cut(s)	595, 694
BseLI	CCNNNNNNNGG	3 cut(s)	189, 405, 636
BseMI	GCAATG	2 cut(s)	536, 822
BseNI	ACTGG	2 cut(s)	39, 308
BseSI	GKGCMC	1 cut(s)	505
BseXI	GCAGC	1 cut(s)	638
BseYI	CCCAGC	1 cut(s)	370
BshNI	GGYRCC	3 cut(s)	262, 502, 639
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	3 cut(s)	266, 557, 810
BslI	CCNNNNNNNGG	3 cut(s)	189, 405, 636
BsmAI	GTCTC	2 cut(s)	107, 122
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	2 cut(s)	141, 489
BsoBI	CYCGRG	1 cut(s)	771
Bsp1286I	GDGCHC	2 cut(s)	70, 505
Bsp1407I	TGTACA	1 cut(s)	53
Bsp143I	GATC	2 cut(s)	304, 705
Bsp19I	CCATGG	3 cut(s)	136, 146, 222
BspACI	CCGC	5 cut(s)	61, 278, 320, 359, 524
BspLI	GGNNCC	4 cut(s)	264, 468, 504, 641
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	3 cut(s)	262, 502, 639
BsrDI	GCAATG	2 cut(s)	536, 822
BsrGI	TGTACA	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	39, 308
BssECI	CCNNGG	4 cut(s)	136, 146, 222, 810
BssMI	GATC	2 cut(s)	304, 705
BssT1I	CCWWGG	3 cut(s)	136, 146, 222
Bst4CI	ACNGT	3 cut(s)	211, 343, 703
Bst6I	CTCTTC	3 cut(s)	24, 98, 125
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstAUI	TGTACA	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	1 cut(s)	357
BstDSI	CCRYGG	3 cut(s)	136, 146, 222
BstF5I	GGATG	2 cut(s)	595, 694
BstH2I	RGCGCY	1 cut(s)	784
BstHHI	GCGC	1 cut(s)	783
BstKTI	GATC	2 cut(s)	307, 708
BstMAI	GTCTC	2 cut(s)	107, 122
BstMBI	GATC	2 cut(s)	304, 705
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 319, 673
BstSCI	CCNGG	1 cut(s)	809
BstSFI	CTRYAG	2 cut(s)	257, 699
BstSLI	GKGCMC	1 cut(s)	505
BstSNI	TACGTA	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	638
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	406
BtgI	CCRYGG	3 cut(s)	136, 146, 222
BtsCI	GGATG	2 cut(s)	595, 694
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	6 cut(s)	46, 56, 129, 315, 339, 708
Cac8I	GCNNGC	1 cut(s)	357
CfoI	GCGC	1 cut(s)	783
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	4 cut(s)	54, 238, 552, 640
CviAII	CATG	5 cut(s)	137, 147, 223, 331, 485
CviQI	GTAC	4 cut(s)	54, 238, 552, 640
DpnI	GATC	2 cut(s)	306, 707
DpnII	GATC	2 cut(s)	304, 705
Eam1104I	CTCTTC	3 cut(s)	24, 98, 125
EarI	CTCTTC	3 cut(s)	24, 98, 125
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	3 cut(s)	136, 146, 222
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	677
Eco88I	CYCGRG	1 cut(s)	771
EcoT14I	CCWWGG	3 cut(s)	136, 146, 222
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	136, 146, 222
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	5 cut(s)	140, 150, 226, 334, 488
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FatI	CATG	5 cut(s)	136, 146, 222, 330, 484
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	2 cut(s)	320, 627
FokI	GGATG	2 cut(s)	602, 681
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	2 cut(s)	320, 627
FspBI	CTAG	5 cut(s)	71, 314, 383, 456, 569
GlaI	GCGC	1 cut(s)	782
GluI	GCNGC	2 cut(s)	320, 627
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	784
HapII	CCGG	3 cut(s)	266, 557, 810
HhaI	GCGC	1 cut(s)	783
Hin1II	CATG	5 cut(s)	140, 150, 226, 334, 488
Hin6I	GCGC	1 cut(s)	781
HinP1I	GCGC	1 cut(s)	781
HinfI	GANTC	4 cut(s)	8, 170, 217, 787
HpaII	CCGG	3 cut(s)	266, 557, 810
HphI	GGTGA	4 cut(s)	199, 346, 412, 782
Hpy166II	GTNNAC	5 cut(s)	56, 283, 337, 534, 554
Hpy188I	TCNGA	3 cut(s)	400, 512, 657
Hpy188III	TCNNGA	1 cut(s)	569
Hpy8I	GTNNAC	5 cut(s)	56, 283, 337, 534, 554
HpyAV	CCTTC	3 cut(s)	169, 481, 580
HpyCH4III	ACNGT	3 cut(s)	211, 343, 703
HpyCH4IV	ACGT	3 cut(s)	236, 327, 393
HpyCH4V	TGCA	2 cut(s)	626, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 319, 673
HpySE526I	ACGT	3 cut(s)	236, 327, 393
Hsp92II	CATG	5 cut(s)	140, 150, 226, 334, 488
HspAI	GCGC	1 cut(s)	781
KpnI	GGTACC	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	2 cut(s)	304, 705
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	5 cut(s)	71, 314, 383, 456, 569
MaeII	ACGT	3 cut(s)	236, 327, 393
MalI	GATC	2 cut(s)	306, 707
MboI	GATC	2 cut(s)	304, 705
MboII	GAAGA	4 cut(s)	11, 85, 112, 670
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	70, 505
MluCI	AATT	3 cut(s)	75, 81, 187
MlyI	GAGTC	2 cut(s)	179, 211
MnlI	CCTC	6 cut(s)	33, 101, 173, 212, 428, 454
MseI	TTAA	3 cut(s)	45, 324, 618
MspI	CCGG	3 cut(s)	266, 557, 810
MspR9I	CCNGG	1 cut(s)	811
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	2 cut(s)	141, 489
MwoI	GCNNNNNNNGC	3 cut(s)	262, 319, 673
NciI	CCSGG	1 cut(s)	811
NcoI	CCATGG	3 cut(s)	136, 146, 222
NdeII	GATC	2 cut(s)	304, 705
NlaIII	CATG	5 cut(s)	140, 150, 226, 334, 488
NlaIV	GGNNCC	4 cut(s)	264, 468, 504, 641
PctI	GAATGC	2 cut(s)	141, 489
PfeI	GAWTC	2 cut(s)	8, 787
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	2 cut(s)	321, 628
PleI	GAGTC	2 cut(s)	178, 211
PpsI	GAGTC	2 cut(s)	178, 211
Ppu21I	YACGTR	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	4 cut(s)	264, 468, 504, 641
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	4 cut(s)	55, 239, 553, 641
RsaNI	GTAC	4 cut(s)	54, 238, 552, 640
SaqAI	TTAA	3 cut(s)	45, 324, 618
SatI	GCNGC	2 cut(s)	320, 627
Sau3AI	GATC	2 cut(s)	304, 705
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	179, 211
ScrFI	CCNGG	1 cut(s)	811
SduI	GDGCHC	2 cut(s)	70, 505
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	2 cut(s)	257, 699
SinI	GGWCC	1 cut(s)	283
SnaBI	TACGTA	1 cut(s)	394
Sse9I	AATT	3 cut(s)	75, 81, 187
SsiI	CCGC	5 cut(s)	61, 278, 320, 359, 524
SspMI	CTAG	5 cut(s)	71, 314, 383, 456, 569
StyD4I	CCNGG	1 cut(s)	809
StyI	CCWWGG	3 cut(s)	136, 146, 222
TaaI	ACNGT	3 cut(s)	211, 343, 703
TaiI	ACGT	3 cut(s)	239, 330, 396
TasI	AATT	3 cut(s)	75, 81, 187
TatI	WGTACW	2 cut(s)	53, 551
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	2 cut(s)	8, 787
Tru1I	TTAA	3 cut(s)	45, 324, 618
Tru9I	TTAA	3 cut(s)	45, 324, 618
TscAI	CASTG	6 cut(s)	46, 63, 136, 315, 346, 708
TseI	GCWGC	1 cut(s)	626
TspDTI	ATGAA	3 cut(s)	85, 612, 833
TspGWI	ACGGA	1 cut(s)	589
TspRI	CASTG	6 cut(s)	46, 63, 136, 315, 346, 708
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	283
XbaI	TCTAGA	1 cut(s)	568
XspI	CTAG	5 cut(s)	71, 314, 383, 456, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.