Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

60350367 .. 60350919

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0472200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGTTTGCGGCCTCTACAAGACAATCGCGGCCATCCATTTCGAGGCCGACGAGTTCCAGCGCCTGATCCAACGGCAGGAGACGGTCGACGCCGTGAGGAGCAGTGAGCGGGAGAAGCTGAGGATGAACGAGGCGCTGATGAAGTTGCTACTGAGTTTGGACTCCGTGCCCGGGGTGGACCCCACGGTGAGGGAAGCAAGGAGGAAGGTGAGCCGTCGGATCGTGGGGCTGCAGGAGATCGTGGACGCGATTGTTCAGGAAGACGTGGAGGGGTTCTGGGGTGGGTGCGGCGGTGGGTTTGGGAGGGACTACTGGAACGACGTCATGGCGGAGATGGAGGAGGGGTGTGTAGGGAGAGAGGAGGTCGGAAATGGAGAGGTTTTCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

129

Amino Acids

14.5

Weight (kDa)

4.72

Isoelectric Point (pI)

37.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BAG	PF02179	9 - 83	3.8e-15	BAG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
AccBSI	CCGCTC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	87
AccII	CGCG	2 cut(s)	29, 248
AciI	CCGC	6 cut(s)	9, 29, 109, 288, 291, 329
AclWI	GGATC	2 cut(s)	61, 227
AcoI	YGGCCR	1 cut(s)	30
AcyI	GRCGYC	2 cut(s)	90, 321
AfiI	CCNNNNNNNGG	4 cut(s)	43, 76, 171, 189
AjiI	CACGTC	1 cut(s)	265
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	61, 227
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	3 cut(s)	10, 30, 45
ApeKI	GCWGC	1 cut(s)	229
AspLEI	GCGC	2 cut(s)	63, 136
AspS9I	GGNCC	1 cut(s)	178
AsuC2I	CCSGG	2 cut(s)	171, 172
AsuHPI	GGTGA	2 cut(s)	199, 220
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	178
BaeGI	GKGCMC	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	267
BbvCI	CCTCAGC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	2 cut(s)	41, 328
BceAI	ACGGC	3 cut(s)	77, 89, 198
BcnI	CCSGG	2 cut(s)	171, 172
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	230
BfoI	RGCGCY	2 cut(s)	64, 137
BisI	GCNGC	4 cut(s)	10, 30, 230, 289
BlsI	GCNGC	4 cut(s)	11, 31, 231, 290
Bme1390I	CCNGG	2 cut(s)	171, 172
Bme18I	GGWCC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	170
BmgBI	CACGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	178
BmiI	GGNNCC	1 cut(s)	180
BmrFI	CCNGG	2 cut(s)	171, 172
BpiI	GAAGAC	1 cut(s)	267
Bpu10I	CCTNAGC	1 cut(s)	119
BpuMI	CCSGG	2 cut(s)	171, 172
BsaHI	GRCGYC	2 cut(s)	90, 321
BsaJI	CCNNGG	3 cut(s)	170, 171, 183
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 76, 171, 189
Bse1I	ACTGG	1 cut(s)	317
BseDI	CCNNGG	3 cut(s)	170, 171, 183
BseGI	GGATG	2 cut(s)	33, 129
BseLI	CCNNNNNNNGG	4 cut(s)	43, 76, 171, 189
BseMII	CTCAG	2 cut(s)	110, 143
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	3 cut(s)	112, 353, 374
BseSI	GKGCMC	1 cut(s)	171
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	2 cut(s)	29, 248
Bsh1285I	CGRYCG	1 cut(s)	87
BshFI	GGCC	3 cut(s)	12, 32, 47
BsiEI	CGRYCG	1 cut(s)	87
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	171
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	43, 76, 171, 189
BsmAI	GTCTC	1 cut(s)	74
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	3 cut(s)	12, 32, 47
BsoBI	CYCGRG	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	3 cut(s)	66, 219, 237
BspACI	CCGC	6 cut(s)	9, 29, 109, 288, 291, 329
BspANI	GGCC	3 cut(s)	12, 32, 47
BspCNI	CTCAG	2 cut(s)	111, 144
BspFNI	CGCG	2 cut(s)	29, 248
BspLI	GGNNCC	1 cut(s)	180
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	2 cut(s)	61, 227
BsrBI	CCGCTC	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	3 cut(s)	170, 171, 183
BssMI	GATC	3 cut(s)	66, 219, 237
BssNI	GRCGYC	2 cut(s)	90, 321
Bst4CI	ACNGT	2 cut(s)	85, 187
BstACI	GRCGYC	2 cut(s)	90, 321
BstDEI	CTNAG	2 cut(s)	119, 152
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	2 cut(s)	33, 129
BstFNI	CGCG	2 cut(s)	29, 248
BstH2I	RGCGCY	2 cut(s)	64, 137
BstHHI	GCGC	2 cut(s)	63, 136
BstKTI	GATC	3 cut(s)	69, 222, 240
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	3 cut(s)	66, 219, 237
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	169, 170
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	2 cut(s)	29, 248
BstV1I	GCAGC	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	267
BsuRI	GGCC	3 cut(s)	12, 32, 47
BtgI	CCRYGG	1 cut(s)	183
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	2 cut(s)	33, 129
BtsI	GCAGTG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	109
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	2 cut(s)	63, 136
Cfr13I	GGNCC	1 cut(s)	178
Cfr9I	CCCGGG	1 cut(s)	170
CseI	GACGC	2 cut(s)	98, 254
CviAII	CATG	1 cut(s)	325
CviJI	RGCY	6 cut(s)	12, 32, 47, 118, 213, 229
CviKI_1	RGCY	6 cut(s)	12, 32, 47, 118, 213, 229
DdeI	CTNAG	2 cut(s)	119, 152
DpnI	GATC	3 cut(s)	68, 221, 239
DpnII	GATC	3 cut(s)	66, 219, 237
EaeI	YGGCCR	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	178
Eco88I	CYCGRG	1 cut(s)	170
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	1 cut(s)	328
FaiI	YATR	1 cut(s)	326
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	1 cut(s)	324
FauI	CCCGC	1 cut(s)	102
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	4 cut(s)	10, 30, 230, 289
FokI	GGATG	2 cut(s)	20, 136
Fsp4HI	GCNGC	4 cut(s)	10, 30, 230, 289
GlaI	GCGC	2 cut(s)	62, 135
GluI	GCNGC	4 cut(s)	10, 30, 230, 289
HaeII	RGCGCY	2 cut(s)	64, 137
HaeIII	GGCC	3 cut(s)	12, 32, 47
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	2 cut(s)	98, 254
HhaI	GCGC	2 cut(s)	63, 136
Hin1I	GRCGYC	2 cut(s)	90, 321
Hin1II	CATG	1 cut(s)	328
Hin6I	GCGC	2 cut(s)	61, 134
HinP1I	GCGC	2 cut(s)	61, 134
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	2 cut(s)	199, 220
Hpy166II	GTNNAC	3 cut(s)	88, 178, 244
Hpy188I	TCNGA	2 cut(s)	219, 368
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	3 cut(s)	88, 178, 244
Hpy99I	CGWCG	4 cut(s)	53, 92, 219, 323
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	85, 187
HpyCH4IV	ACGT	2 cut(s)	264, 321
HpyCH4V	TGCA	1 cut(s)	232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	115
HpyF3I	CTNAG	2 cut(s)	119, 152
HpySE526I	ACGT	2 cut(s)	264, 321
Hsp92I	GRCGYC	2 cut(s)	90, 321
Hsp92II	CATG	1 cut(s)	328
HspAI	GCGC	2 cut(s)	61, 134
Kzo9I	GATC	3 cut(s)	66, 219, 237
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	8 cut(s)	62, 71, 77, 184, 218, 242, 262, 298
Lsp1109I	GCAGC	1 cut(s)	216
MaeII	ACGT	2 cut(s)	264, 321
MalI	GATC	3 cut(s)	68, 221, 239
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	3 cut(s)	66, 219, 237
MboII	GAAGA	1 cut(s)	272
MhlI	GDGCHC	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	3 cut(s)	94, 197, 346
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	171, 172
MvnI	CGCG	2 cut(s)	29, 248
MwoI	GCNNNNNNNGC	1 cut(s)	115
NciI	CCSGG	2 cut(s)	171, 172
NdeII	GATC	3 cut(s)	66, 219, 237
NlaIII	CATG	1 cut(s)	328
NlaIV	GGNNCC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PkrI	GCNGC	4 cut(s)	11, 31, 231, 290
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	178
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	64
SalI	GTCGAC	1 cut(s)	86
SatI	GCNGC	4 cut(s)	10, 30, 230, 289
Sau3AI	GATC	3 cut(s)	66, 219, 237
Sau96I	GGNCC	1 cut(s)	178
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	171, 172
SduI	GDGCHC	1 cut(s)	171
SetI	ASST	6 cut(s)	120, 210, 267, 324, 366, 381
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	178
SmaI	CCCGGG	1 cut(s)	172
SsiI	CCGC	6 cut(s)	9, 29, 109, 288, 291, 329
StyD4I	CCNGG	2 cut(s)	169, 170
TaaI	ACNGT	2 cut(s)	85, 187
TaiI	ACGT	2 cut(s)	267, 324
TaqI	TCGA	2 cut(s)	42, 87
TauI	GCSGC	3 cut(s)	12, 32, 291
TscAI	CASTG	1 cut(s)	109
TseI	GCWGC	1 cut(s)	229
TspDTI	ATGAA	2 cut(s)	140, 155
TspGWI	ACGGA	1 cut(s)	154
TspMI	CCCGGG	1 cut(s)	170
TspRI	CASTG	1 cut(s)	109
VpaK11BI	GGWCC	1 cut(s)	178
XmaI	CCCGGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	87
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.