Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

71132625 .. 71133191

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G044490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCAGATTCTCTATCTCTTCCTCTATGTGAAAAAACCAGTGTTAAAGTTTGTACACTGCGGAGAGCCCTAGAAATTGTAATTTCAGTCCTCTTCATTTGTCTCCTTGCTTATCGTCTCTTCTCTCTCACTGACCATGGCATTCCATGGCTTCTCGCCTTCCTCTGCGAGTCTTGGTTTGCCATCAATTGGGTTCTCAACCTCATCACCGTATGGACTCCCATGGATTGCAAAACGTACCCCAACAATCTCTTGCAACAGGTGCCGGAGCTTCCTGCGGTGGACCTGTTTGTATCAAAGGCAGATCCAGTGCTAGAGACGCTTATCGTCATGGTGAACACTGTCCTGTCTTTGCTGGCGGTTGATTACCCAGCTCACAAGCTAGCTTGCTACGTATCCGATGACGGGTGTTCCCCCCTCACCCTTTTTTCTCTCATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

147

Amino Acids

16.43

Weight (kDa)

4.74

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	94 - 145	1.3e-14	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccB7I	CCANNNNNTGG	1 cut(s)	189
AciI	CCGC	3 cut(s)	61, 278, 359
AclWI	GGATC	1 cut(s)	299
AfaI	GTAC	2 cut(s)	55, 239
AfiI	CCNNNNNNNGG	2 cut(s)	189, 405
AluBI	AGCT	4 cut(s)	271, 374, 382, 386
AluI	AGCT	4 cut(s)	271, 374, 382, 386
Alw26I	GTCTC	3 cut(s)	107, 122, 311
AlwI	GGATC	1 cut(s)	299
AseI	ATTAAT	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	3 cut(s)	199, 346, 412
AsuNHI	GCTAGC	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	283
BanI	GGYRCC	1 cut(s)	262
BanII	GRGCYC	1 cut(s)	70
BccI	CCATC	1 cut(s)	191
BciVI	GTATCC	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	107, 122, 311
BfaI	CTAG	3 cut(s)	71, 314, 383
BfuI	GTATCC	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	264
BmtI	GCTAGC	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	394
BsaJI	CCNNGG	3 cut(s)	136, 146, 222
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 405
Bse1I	ACTGG	2 cut(s)	39, 308
BseDI	CCNNGG	3 cut(s)	136, 146, 222
BseLI	CCNNNNNNNGG	2 cut(s)	189, 405
BseNI	ACTGG	2 cut(s)	39, 308
BseYI	CCCAGC	1 cut(s)	370
BshNI	GGYRCC	1 cut(s)	262
BsiSI	CCGG	1 cut(s)	266
BslI	CCNNNNNNNGG	2 cut(s)	189, 405
BsmAI	GTCTC	3 cut(s)	107, 122, 311
BsmBI	CGTCTC	2 cut(s)	122, 311
BsmI	GAATGC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	53
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	3 cut(s)	136, 146, 222
BspACI	CCGC	3 cut(s)	61, 278, 359
BspLI	GGNNCC	1 cut(s)	264
BspOI	GCTAGC	1 cut(s)	386
BspPI	GGATC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	39, 308
BssECI	CCNNGG	3 cut(s)	136, 146, 222
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	3 cut(s)	136, 146, 222
Bst4CI	ACNGT	2 cut(s)	211, 343
Bst6I	CTCTTC	3 cut(s)	24, 98, 125
BstAPI	GCANNNNNTGC	1 cut(s)	262
BstAUI	TGTACA	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	394
BstC8I	GCNNGC	3 cut(s)	357, 384, 388
BstDSI	CCRYGG	3 cut(s)	136, 146, 222
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	3 cut(s)	107, 122, 311
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 319
BstSNI	TACGTA	1 cut(s)	394
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuI	GTATCC	1 cut(s)	406
BtgI	CCRYGG	3 cut(s)	136, 146, 222
BtsI	GCAGTG	1 cut(s)	56
BtsIMutI	CAGTG	5 cut(s)	46, 56, 129, 315, 339
Cac8I	GCNNGC	3 cut(s)	357, 384, 388
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	2 cut(s)	54, 238
CviAII	CATG	4 cut(s)	137, 147, 223, 331
CviJI	RGCY	6 cut(s)	68, 151, 271, 374, 382, 386
CviKI_1	RGCY	6 cut(s)	68, 151, 271, 374, 382, 386
CviQI	GTAC	2 cut(s)	54, 238
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
Eam1104I	CTCTTC	3 cut(s)	24, 98, 125
EarI	CTCTTC	3 cut(s)	24, 98, 125
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	3 cut(s)	136, 146, 222
Eco24I	GRGCYC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	136, 146, 222
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	3 cut(s)	136, 146, 222
Esp3I	CGTCTC	2 cut(s)	122, 311
FaeI	CATG	4 cut(s)	140, 150, 226, 334
FaiI	YATR	6 cut(s)	28, 138, 148, 214, 224, 332
FatI	CATG	4 cut(s)	136, 146, 222, 330
FriOI	GRGCYC	1 cut(s)	70
FspBI	CTAG	3 cut(s)	71, 314, 383
GsaI	CCCAGC	1 cut(s)	374
HapII	CCGG	1 cut(s)	266
HgaI	GACGC	1 cut(s)	328
Hin1II	CATG	4 cut(s)	140, 150, 226, 334
HinfI	GANTC	3 cut(s)	8, 170, 217
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	3 cut(s)	199, 346, 412
Hpy166II	GTNNAC	3 cut(s)	56, 283, 337
Hpy188I	TCNGA	1 cut(s)	400
Hpy8I	GTNNAC	3 cut(s)	56, 283, 337
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	211, 343
HpyCH4IV	ACGT	2 cut(s)	236, 393
HpyCH4V	TGCA	2 cut(s)	231, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 319
HpySE526I	ACGT	2 cut(s)	236, 393
Hsp92II	CATG	4 cut(s)	140, 150, 226, 334
Kzo9I	GATC	1 cut(s)	304
LmnI	GCTCC	1 cut(s)	268
LpnPI	CCDG	9 cut(s)	52, 245, 279, 288, 299, 321, 341, 359, 384
MaeI	CTAG	3 cut(s)	71, 314, 383
MaeII	ACGT	2 cut(s)	236, 393
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	11, 85, 112
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	4 cut(s)	75, 81, 187, 439
MlyI	GAGTC	2 cut(s)	179, 211
MnlI	CCTC	5 cut(s)	33, 101, 173, 212, 428
MseI	TTAA	2 cut(s)	45, 438
MspI	CCGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	141
MwoI	GCNNNNNNNGC	2 cut(s)	262, 319
NcoI	CCATGG	3 cut(s)	136, 146, 222
NdeII	GATC	1 cut(s)	304
NheI	GCTAGC	1 cut(s)	382
NlaIII	CATG	4 cut(s)	140, 150, 226, 334
NlaIV	GGNNCC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	8
PflMI	CCANNNNNTGG	1 cut(s)	189
PleI	GAGTC	2 cut(s)	178, 211
PpsI	GAGTC	2 cut(s)	178, 211
Ppu21I	YACGTR	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	438
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	2 cut(s)	55, 239
RsaNI	GTAC	2 cut(s)	54, 238
SaqAI	TTAA	2 cut(s)	45, 438
Sau3AI	GATC	1 cut(s)	304
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	179, 211
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	204, 239, 264, 273, 288, 376, 384, 388, 396
SinI	GGWCC	1 cut(s)	283
SnaBI	TACGTA	1 cut(s)	394
Sse9I	AATT	4 cut(s)	75, 81, 187, 439
SsiI	CCGC	3 cut(s)	61, 278, 359
SspMI	CTAG	3 cut(s)	71, 314, 383
StyI	CCWWGG	3 cut(s)	136, 146, 222
TaaI	ACNGT	2 cut(s)	211, 343
TaiI	ACGT	2 cut(s)	239, 396
TasI	AATT	4 cut(s)	75, 81, 187, 439
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	45, 438
Tru9I	TTAA	2 cut(s)	45, 438
TscAI	CASTG	5 cut(s)	46, 63, 136, 315, 346
TspDTI	ATGAA	1 cut(s)	85
TspRI	CASTG	5 cut(s)	46, 63, 136, 315, 346
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	438
XspI	CTAG	3 cut(s)	71, 314, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.