Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

76611183 .. 76616276

Gene Structure 5094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG538100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGCCAACTCAAACTCTCTTCCTCTCTATGAAAGGGTTGAGCACAGAAACACACTGCATAAAGTCATGGAGTTTATAATCCTCTTCCTCCTTCTTTCACTCCTTGTTTATCGTCTCCTCTCTTTCAACAACCATGGTTTATCCTGGTCCATCGCATTCCTCTGCGAGCTCTGGTTTACCTTCAGTTGGGTCATCACCATGAGCAACAAATGGATTCTTGTTGACCATAAACCATACCCCGACCGCCTATTGCAACGGGTGCCTAAGGATGAGCTTCCAGCAGTAGACTTGTTTGTGACCACAGCAGACCCAGAGCTTGAACCACCTATCATTACCGTAAACACTGTTCTGTCTCTGTTGGCAGTTGATTACCCAACAGACAAACTAGCATGCTATGTTTCTGATGATGGGTGTTCCCCTATCACCTTCTACTCACTTGTGGAAGCATCAAAGTTTGCTAAGATTTGGGTTCCCTTTTGCAAAAAGTACAATGTTCAAGTTAGATCTCCCTTTAGATACTTCACCAATAATTCCACGCTTTCTGGAATTAATAATACTAGCTCAATGGAATTCAAGCATGAATGGACGAGAGTGAAGGATGAGTATGAGCAACTTAGCAGCAAAATCGAGGATGTGGTGCGCAAATCTATCAATCCGTCTGATATTATTGAATGCGACTTTTCAGTGTTCTCAAATGTACAGCGTAATGATCATCCAACAATAATCAAGGTTGTATTGGAGAACAAAGAAGCACATTCGAATCGATCAGTGCCACATTTAGTTTATATATCCAGAGAAAAACGGCCGAAGCATCCACATCATGCCAAAGCCGGGGCCATGAATGTTCTGACTAGAGTCTCTGGGTTGATGACCAATGCTCCATACATGCTAAATGTGGACTGCGACATGTTTGTCAACAGCCCGAACATTATTCTTCATGCAATGTGTATGCTACTTGGATCAAAGAATGAAAATGAAAATGCATTTGTTCAGTGTCCTCAAGTCTTCTGTGACGGTCTAAAGGATGATCCTTTCGGAAATCAGATGATAGTTTGGTGGAAGTATGTGGGACAAGGAGTTTCAGGAATTCAGGGACCTTTTTATTCCGGATCAGGATGTGTTCATACACGAAAAGTTATCTATGGTCTATCCCCCAATCACGTGAAAGTTGAAGAAACAAATGCAAAAAACTTGATGAACGGTAAATCAGCCGATGAAGAGTTACTTGATGTATTTGGGAAGGCATTTACCAAATCAGCTGCTGATGCTTTAAACGGGAAGGCAGTGTGCCCAGACACGCGTACAGAAACTATTGAGGCTGCATACCAAGTTGCTGGTGCTGGATATGAGTATGGCACACAATGGGGCAAAAAGGTGGGATGGATGTATGGATCCTCAACTGAAGATGCCCTCACTGGACTTTCAATCCATAACAAAGGTTGGAGATCCATTGTTTATGCACCAGACCCACCAGCCTTTCTTGAATGCGCGCCTACTGGTGGGCCTGCTGTAATGACCCAACAGAAAAGGTGGGCCACCGGCCTGCTTGAAATCCTCCTCAGTAAAAACTGCCCCATATTTGGTACTCTCTTTGCAAACCTCCGGTTGAGGCAGTGCTTGGGCTACTTCAGTATCCTTTCATGGGGGATAAGCTCAGTTCTCGAGCTATACTATGCTGCTCTGCCAGCCTATAGTATCATCACCAACTCACACTTCTTGCCGAAGGGCCAAGAACCGGCTTACTATATACTCGTAGCTGTGTTTCTGATCTACACTATGTACACTTCATCCGAGTACCTTAGAACCGGTCAATCAATCCGAGCATGGTGGAATAACCAAAGAATGGGAAGAATAATCTCAATGAGTGCATGGCTTTTTGGATTTCTTAGTGTCATACTCAAACTCTTGGGCATATCCGAGACAGTCTTCGAGGTAACACGAAAAGACCAATCTACATCAAGCGATGAAGGCACTGAAGATACTGAATCCGGAAAATTCACCTTTGACCAGTCCCCAGTTTTCATACCTCCCACAGCAATGTTGTTTCTGCAATTAACAGCACTGGCCACCGCTTTGTTGGGGCTTCAACCACCAGCCCGTGATGGGGTGGAATCAGGCTCTTTGGAGACCATGTGCAGTGTTTTGTTGGTGGTATGCTTATTACCATTTTTGAAAGGTCTGTTTGGATCAGGAAAATATGGAATTCCTCTGTCTACCATATTTAAGTCTGCTGGTTTTGCACTATTCTTCTACACCTTGTGCAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

756

Amino Acids

84.76

Weight (kDa)

6.76

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	95 - 394	7.8e-88	Cellulose synthase
Cellulose_synt	PF03552	408 - 731	3.3e-50	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AasI	GACNNNNNNGTC	1 cut(s)	911
Acc16I	TGCGCA	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	259
AccB7I	CCANNNNNTGG	1 cut(s)	1843
AccI	GTMKAC	2 cut(s)	285, 2213
AccII	CGCG	2 cut(s)	1300, 1490
AccIII	TCCGGA	2 cut(s)	1106, 1988
AciI	CCGC	2 cut(s)	244, 2070
AclWI	GGATC	7 cut(s)	967, 1022, 1117, 1386, 1399, 1440, 2194
AcoI	YGGCCR	3 cut(s)	3, 803, 2064
AcsI	RAATTY	4 cut(s)	569, 1086, 1994, 2202
AcuI	CTGAAG	4 cut(s)	166, 1422, 1612, 1995
AcvI	CACGTG	1 cut(s)	1162
AdeI	CACNNNGTG	1 cut(s)	2259
AfaI	GTAC	6 cut(s)	488, 699, 1303, 1585, 1781, 1796
AfiI	CCNNNNNNNGG	9 cut(s)	186, 831, 1499, 1580, 1642, 1735, 1843, 2103, 2104
AflIII	ACRYGT	2 cut(s)	906, 1298
AgeI	ACCGGT	1 cut(s)	1805
AjnI	CCWGG	1 cut(s)	143
AjuI	GAANNNNNNNTTGG	2 cut(s)	1697, 1729
AluBI	AGCT	8 cut(s)	169, 274, 316, 561, 1259, 1653, 1666, 1757
AluI	AGCT	8 cut(s)	169, 274, 316, 561, 1259, 1653, 1666, 1757
Alw21I	GWGCWC	2 cut(s)	45, 171
Alw26I	GTCTC	5 cut(s)	119, 357, 862, 1913, 2120
AlwI	GGATC	7 cut(s)	967, 1022, 1117, 1386, 1399, 1440, 2194
AlwNI	CAGNNNCTG	1 cut(s)	1262
Ama87I	CYCGRG	1 cut(s)	1661
Aor13HI	TCCGGA	2 cut(s)	1106, 1988
AoxI	GGCC	8 cut(s)	3, 803, 834, 1502, 1533, 1540, 1726, 2064
ApeKI	GCWGC	4 cut(s)	618, 1259, 1319, 1676
ApoI	RAATTY	4 cut(s)	569, 1086, 1994, 2202
AseI	ATTAAT	1 cut(s)	549
AsiGI	ACCGGT	1 cut(s)	1805
AspLEI	GCGC	3 cut(s)	642, 1490, 1492
AspS9I	GGNCC	6 cut(s)	147, 834, 1094, 1502, 1533, 1726
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	5 cut(s)	187, 415, 514, 1693, 1990
AsuII	TTCGAA	1 cut(s)	758
AvaI	CYCGRG	1 cut(s)	1661
AvaII	GGWCC	2 cut(s)	147, 1094
AxyI	CCTNAGG	1 cut(s)	264
BaeGI	GKGCMC	1 cut(s)	1292
BaeI	ACNNNNGTAYC	2 cut(s)	1615, 1648
BalI	TGGCCA	2 cut(s)	5, 2066
BamHI	GGATCC	1 cut(s)	1391
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	1 cut(s)	171
BbrPI	CACGTG	1 cut(s)	1162
BbsI	GAAGAC	2 cut(s)	997, 1918
Bbv12I	GWGCWC	2 cut(s)	45, 171
BbvI	GCAGC	4 cut(s)	630, 1246, 1306, 1663
BccI	CCATC	4 cut(s)	158, 401, 1374, 2096
BceAI	ACGGC	1 cut(s)	818
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	1643
BclI	TGATCA	1 cut(s)	709
BcnI	CCSGG	1 cut(s)	832
BcoDI	GTCTC	5 cut(s)	119, 357, 862, 1913, 2120
BfaI	CTAG	3 cut(s)	386, 558, 852
BfmI	CTRYAG	1 cut(s)	1690
BfuI	GTATCC	1 cut(s)	1643
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	4 cut(s)	619, 1260, 1320, 1677
BlsI	GCNGC	4 cut(s)	620, 1261, 1321, 1678
Bme1390I	CCNGG	2 cut(s)	145, 832
Bme18I	GGWCC	2 cut(s)	147, 1094
BmeT110I	CYCGRG	1 cut(s)	1661
BmgT120I	GGNCC	6 cut(s)	147, 834, 1094, 1502, 1533, 1726
BmiI	GGNNCC	5 cut(s)	261, 471, 835, 1095, 1393
BmrFI	CCNGG	2 cut(s)	145, 832
BmrI	ACTGGG	1 cut(s)	2009
BmsI	GCATC	4 cut(s)	455, 820, 1255, 1396
BmuI	ACTGGG	1 cut(s)	2009
BoxI	GACNNNNGTC	1 cut(s)	854
BpiI	GAAGAC	2 cut(s)	997, 1918
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	984
BpuMI	CCSGG	1 cut(s)	832
Bsa29I	ATCGAT	1 cut(s)	763
BsaAI	YACGTR	1 cut(s)	1162
BsaI	GGTCTC	1 cut(s)	2120
BsaJI	CCNNGG	2 cut(s)	133, 831
BsaWI	WCCGGW	4 cut(s)	1106, 1602, 1805, 1988
BsaXI	ACNNNNNCTCC	4 cut(s)	862, 892, 2117, 2147
Bsc4I	CCNNNNNNNGG	9 cut(s)	186, 831, 1499, 1580, 1642, 1735, 1843, 2103, 2104
Bse118I	RCCGGY	3 cut(s)	1538, 1735, 1805
Bse1I	ACTGG	5 cut(s)	1420, 1501, 2008, 2015, 2067
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	2 cut(s)	948, 2043
BseAI	TCCGGA	2 cut(s)	1106, 1988
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	763
BseDI	CCNNGG	2 cut(s)	133, 831
BseLI	CCNNNNNNNGG	9 cut(s)	186, 831, 1499, 1580, 1642, 1735, 1843, 2103, 2104
BseMI	GCAATG	2 cut(s)	948, 2043
BseMII	CTCAG	2 cut(s)	1573, 1668
BseNI	ACTGG	5 cut(s)	1420, 1501, 2008, 2015, 2067
BsePI	GCGCGC	1 cut(s)	1488
BseRI	GAGGAG	2 cut(s)	107, 1547
BseSI	GKGCMC	1 cut(s)	1292
BseX3I	CGGCCG	1 cut(s)	803
BseXI	GCAGC	4 cut(s)	630, 1246, 1306, 1663
BsgI	GTGCAG	1 cut(s)	2155
Bsh1236I	CGCG	2 cut(s)	1300, 1490
Bsh1285I	CGRYCG	2 cut(s)	244, 806
BshFI	GGCC	8 cut(s)	5, 805, 836, 1504, 1535, 1542, 1728, 2066
BshNI	GGYRCC	1 cut(s)	259
BshTI	ACCGGT	1 cut(s)	1805
BshVI	ATCGAT	1 cut(s)	763
BsiEI	CGRYCG	2 cut(s)	244, 806
BsiHKAI	GWGCWC	2 cut(s)	45, 171
BsiHKCI	CYCGRG	1 cut(s)	1661
BsiSI	CCGG	7 cut(s)	831, 1107, 1539, 1603, 1736, 1806, 1989
BslFI	GGGAC	3 cut(s)	1083, 1107, 1996
BslI	CCNNNNNNNGG	9 cut(s)	186, 831, 1499, 1580, 1642, 1735, 1843, 2103, 2104
BsmAI	GTCTC	5 cut(s)	119, 357, 862, 1913, 2120
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	3 cut(s)	1083, 1107, 1996
BsmI	GAATGC	3 cut(s)	155, 677, 1490
BsnI	GGCC	8 cut(s)	5, 805, 836, 1504, 1535, 1542, 1728, 2066
Bso31I	GGTCTC	1 cut(s)	2120
BsoBI	CYCGRG	1 cut(s)	1661
Bsp119I	TTCGAA	1 cut(s)	758
Bsp1286I	GDGCHC	3 cut(s)	45, 171, 1292
Bsp13I	TCCGGA	2 cut(s)	1106, 1988
Bsp1407I	TGTACA	2 cut(s)	697, 1779
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	2 cut(s)	244, 2070
BspANI	GGCC	8 cut(s)	5, 805, 836, 1504, 1535, 1542, 1728, 2066
BspCNI	CTCAG	2 cut(s)	1572, 1667
BspDI	ATCGAT	1 cut(s)	763
BspEI	TCCGGA	2 cut(s)	1106, 1988
BspFNI	CGCG	2 cut(s)	1300, 1490
BspLI	GGNNCC	5 cut(s)	261, 471, 835, 1095, 1393
BspPI	GGATC	7 cut(s)	967, 1022, 1117, 1386, 1399, 1440, 2194
BspT104I	TTCGAA	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	259
BspTNI	GGTCTC	1 cut(s)	2120
BsrDI	GCAATG	2 cut(s)	948, 2043
BsrFI	RCCGGY	3 cut(s)	1538, 1735, 1805
BsrGI	TGTACA	2 cut(s)	697, 1779
BsrI	ACTGG	5 cut(s)	1420, 1501, 2008, 2015, 2067
BssAI	RCCGGY	3 cut(s)	1538, 1735, 1805
BssECI	CCNNGG	2 cut(s)	133, 831
BssHII	GCGCGC	1 cut(s)	1488
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	5 cut(s)	337, 346, 1016, 1202, 1924
Bst6I	CTCTTC	3 cut(s)	24, 89, 1212
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	2 cut(s)	697, 1779
BstBAI	YACGTR	1 cut(s)	1162
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	6 cut(s)	167, 391, 1490, 1506, 1544, 1686
BstDEI	CTNAG	7 cut(s)	264, 459, 614, 1559, 1654, 1799, 1886
BstDSI	CCRYGG	1 cut(s)	133
BstFNI	CGCG	2 cut(s)	1300, 1490
BstHHI	GCGC	3 cut(s)	642, 1490, 1492
BstMAI	GTCTC	5 cut(s)	119, 357, 862, 1913, 2120
BstMCI	CGRYCG	2 cut(s)	244, 806
BstMWI	GCNNNNNNNGC	5 cut(s)	259, 1265, 1685, 1968, 2237
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	3 cut(s)	393, 889, 910
BstPAI	GACNNNNGTC	1 cut(s)	854
BstSCI	CCNGG	2 cut(s)	143, 830
BstSFI	CTRYAG	1 cut(s)	1690
BstSLI	GKGCMC	1 cut(s)	1292
BstUI	CGCG	2 cut(s)	1300, 1490
BstV1I	GCAGC	4 cut(s)	630, 1246, 1306, 1663
BstV2I	GAAGAC	2 cut(s)	997, 1918
BstX2I	RGATCY	3 cut(s)	503, 1391, 1445
BstXI	CCANNNNNNTGG	1 cut(s)	1334
BstYI	RGATCY	3 cut(s)	503, 1391, 1445
BstZI	CGGCCG	1 cut(s)	803
Bsu15I	ATCGAT	1 cut(s)	763
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	1643
BsuRI	GGCC	8 cut(s)	5, 805, 836, 1504, 1535, 1542, 1728, 2066
BsuTUI	ATCGAT	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	2 cut(s)	136, 1977
BtsI	GCAGTG	4 cut(s)	53, 1290, 1619, 2143
Cac8I	GCNNGC	6 cut(s)	167, 391, 1490, 1506, 1544, 1686
CaiI	CAGNNNCTG	1 cut(s)	1262
CfoI	GCGC	3 cut(s)	642, 1490, 1492
Cfr10I	RCCGGY	3 cut(s)	1538, 1735, 1805
Cfr13I	GGNCC	6 cut(s)	147, 834, 1094, 1502, 1533, 1726
ClaI	ATCGAT	1 cut(s)	763
Csp6I	GTAC	6 cut(s)	487, 698, 1302, 1584, 1780, 1795
CspAI	ACCGGT	1 cut(s)	1805
CviQI	GTAC	6 cut(s)	487, 698, 1302, 1584, 1780, 1795
DdeI	CTNAG	7 cut(s)	264, 459, 614, 1559, 1654, 1799, 1886
DraI	TTTAAA	1 cut(s)	1272
DraIII	CACNNNGTG	1 cut(s)	2259
DrdI	GACNNNNNNGTC	1 cut(s)	911
DseDI	GACNNNNNNGTC	1 cut(s)	911
EaeI	YGGCCR	3 cut(s)	3, 803, 2064
EagI	CGGCCG	1 cut(s)	803
Eam1104I	CTCTTC	3 cut(s)	24, 89, 1212
EarI	CTCTTC	3 cut(s)	24, 89, 1212
Ecl136II	GAGCTC	1 cut(s)	169
EclXI	CGGCCG	1 cut(s)	803
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	171
Eco31I	GGTCTC	1 cut(s)	2120
Eco47I	GGWCC	2 cut(s)	147, 1094
Eco52I	CGGCCG	1 cut(s)	803
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	4 cut(s)	166, 1422, 1612, 1995
Eco72I	CACGTG	1 cut(s)	1162
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	1661
EcoICRI	GAGCTC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	1094
EcoRI	GAATTC	3 cut(s)	569, 1086, 2202
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	1 cut(s)	171
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	119
FalI	AAGNNNNNCTT	2 cut(s)	1209, 1241
FaqI	GGGAC	3 cut(s)	1083, 1107, 1996
FbaI	TGATCA	1 cut(s)	709
FblI	GTMKAC	2 cut(s)	285, 2213
Fnu4HI	GCNGC	4 cut(s)	619, 1260, 1320, 1677
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	4 cut(s)	619, 1260, 1320, 1677
FspBI	CTAG	3 cut(s)	386, 558, 852
FspI	TGCGCA	1 cut(s)	641
GlaI	GCGC	3 cut(s)	641, 1489, 1491
GluI	GCNGC	4 cut(s)	619, 1260, 1320, 1677
HaeIII	GGCC	8 cut(s)	5, 805, 836, 1504, 1535, 1542, 1728, 2066
HapII	CCGG	7 cut(s)	831, 1107, 1539, 1603, 1736, 1806, 1989
HhaI	GCGC	3 cut(s)	642, 1490, 1492
Hin6I	GCGC	3 cut(s)	640, 1488, 1490
HinP1I	GCGC	3 cut(s)	640, 1488, 1490
HincII	GTYRAC	2 cut(s)	223, 916
HindII	GTYRAC	2 cut(s)	223, 916
HinfI	GANTC	5 cut(s)	214, 760, 855, 1985, 2111
HpaII	CCGG	7 cut(s)	831, 1107, 1539, 1603, 1736, 1806, 1989
HphI	GGTGA	5 cut(s)	187, 415, 514, 1693, 1990
Hpy166II	GTNNAC	8 cut(s)	177, 223, 286, 340, 898, 916, 1782, 2214
Hpy188I	TCNGA	9 cut(s)	403, 661, 849, 1037, 1044, 1767, 1792, 1820, 1918
Hpy188III	TCNNGA	9 cut(s)	543, 792, 1083, 1107, 1113, 1481, 1661, 1989, 2190
Hpy8I	GTNNAC	8 cut(s)	177, 223, 286, 340, 898, 916, 1782, 2214
HpyAV	CCTTC	8 cut(s)	101, 190, 436, 589, 1234, 1273, 1717, 1961
HpyCH4III	ACNGT	5 cut(s)	337, 346, 1016, 1202, 1924
HpyCH4IV	ACGT	1 cut(s)	1161
HpyF10VI	GCNNNNNNNGC	5 cut(s)	259, 1265, 1685, 1968, 2237
HpyF3I	CTNAG	7 cut(s)	264, 459, 614, 1559, 1654, 1799, 1886
HpySE526I	ACGT	1 cut(s)	1161
HspAI	GCGC	3 cut(s)	640, 1488, 1490
Kpn2I	TCCGGA	2 cut(s)	1106, 1988
Ksp22I	TGATCA	1 cut(s)	709
LmnI	GCTCC	1 cut(s)	883
Lsp1109I	GCAGC	4 cut(s)	630, 1246, 1306, 1663
LweI	GCATC	4 cut(s)	455, 820, 1255, 1396
MaeI	CTAG	3 cut(s)	386, 558, 852
MaeII	ACGT	1 cut(s)	1161
MaeIII	GTNAC	4 cut(s)	295, 1010, 1221, 1933
MflI	RGATCY	3 cut(s)	503, 1391, 1445
MhlI	GDGCHC	3 cut(s)	45, 171, 1292
MlsI	TGGCCA	2 cut(s)	5, 2066
MluCI	AATT	7 cut(s)	529, 546, 569, 1086, 1994, 2051, 2202
MluI	ACGCGT	1 cut(s)	1298
MluNI	TGGCCA	2 cut(s)	5, 2066
MlyI	GAGTC	1 cut(s)	864
MmeI	TCCRAC	2 cut(s)	740, 1421
Mox20I	TGGCCA	2 cut(s)	5, 2066
Mph1103I	ATGCAT	1 cut(s)	985
MroI	TCCGGA	2 cut(s)	1106, 1988
MscI	TGGCCA	2 cut(s)	5, 2066
MseI	TTAA	4 cut(s)	549, 1271, 2054, 2223
MslI	CAYNNNNRTG	2 cut(s)	197, 2036
Msp20I	TGGCCA	2 cut(s)	5, 2066
MspA1I	CMGCKG	1 cut(s)	1259
MspI	CCGG	7 cut(s)	831, 1107, 1539, 1603, 1736, 1806, 1989
MspR9I	CCNGG	2 cut(s)	145, 832
Mva1269I	GAATGC	3 cut(s)	155, 677, 1490
MvaI	CCWGG	1 cut(s)	145
MvnI	CGCG	2 cut(s)	1300, 1490
MwoI	GCNNNNNNNGC	5 cut(s)	259, 1265, 1685, 1968, 2237
NciI	CCSGG	1 cut(s)	832
NcoI	CCATGG	1 cut(s)	133
NlaIV	GGNNCC	5 cut(s)	261, 471, 835, 1095, 1393
NmuCI	GTSAC	2 cut(s)	295, 1010
NsbI	TGCGCA	1 cut(s)	641
NsiI	ATGCAT	1 cut(s)	985
NspI	RCATGY	3 cut(s)	393, 889, 910
NspV	TTCGAA	1 cut(s)	758
PaeI	GCATGC	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	1661
PauI	GCGCGC	1 cut(s)	1488
PciI	ACATGT	1 cut(s)	906
PctI	GAATGC	3 cut(s)	155, 677, 1490
PfeI	GAWTC	4 cut(s)	214, 760, 1985, 2111
PflMI	CCANNNNNTGG	1 cut(s)	1843
PinAI	ACCGGT	1 cut(s)	1805
PkrI	GCNGC	4 cut(s)	620, 1261, 1321, 1678
PleI	GAGTC	1 cut(s)	863
PmaCI	CACGTG	1 cut(s)	1162
PmlI	CACGTG	1 cut(s)	1162
PpsI	GAGTC	1 cut(s)	863
Ppu21I	YACGTR	1 cut(s)	1162
PpuMI	RGGWCCY	1 cut(s)	1094
PscI	ACATGT	1 cut(s)	906
PshAI	GACNNNNGTC	1 cut(s)	854
PshBI	ATTAAT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	77
Psp124BI	GAGCTC	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	1094
Psp6I	CCWGG	1 cut(s)	143
PspCI	CACGTG	1 cut(s)	1162
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	5 cut(s)	261, 471, 835, 1095, 1393
PspPI	GGNCC	6 cut(s)	147, 834, 1094, 1502, 1533, 1726
PspPPI	RGGWCCY	1 cut(s)	1094
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
PstNI	CAGNNNCTG	1 cut(s)	1262
PsuI	RGATCY	3 cut(s)	503, 1391, 1445
PteI	GCGCGC	1 cut(s)	1488
PvuII	CAGCTG	1 cut(s)	1259
RsaI	GTAC	6 cut(s)	488, 699, 1303, 1585, 1781, 1796
RsaNI	GTAC	6 cut(s)	487, 698, 1302, 1584, 1780, 1795
RseI	CAYNNNNRTG	2 cut(s)	197, 2036
SacI	GAGCTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	549, 1271, 2054, 2223
SatI	GCNGC	4 cut(s)	619, 1260, 1320, 1677
Sau96I	GGNCC	6 cut(s)	147, 834, 1094, 1502, 1533, 1726
SchI	GAGTC	1 cut(s)	864
ScrFI	CCNGG	2 cut(s)	145, 832
SduI	GDGCHC	3 cut(s)	45, 171, 1292
SfaNI	GCATC	4 cut(s)	455, 820, 1255, 1396
SfcI	CTRYAG	1 cut(s)	1690
Sfr274I	CTCGAG	1 cut(s)	1661
SfuI	TTCGAA	1 cut(s)	758
SinI	GGWCC	2 cut(s)	147, 1094
SlaI	CTCGAG	1 cut(s)	1661
SmiMI	CAYNNNNRTG	2 cut(s)	197, 2036
SmlI	CTYRAG	2 cut(s)	999, 1661
SmoI	CTYRAG	2 cut(s)	999, 1661
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	7 cut(s)	529, 546, 569, 1086, 1994, 2051, 2202
SsiI	CCGC	2 cut(s)	244, 2070
SspMI	CTAG	3 cut(s)	386, 558, 852
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	2 cut(s)	143, 830
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	5 cut(s)	337, 346, 1016, 1202, 1924
TaiI	ACGT	1 cut(s)	1164
TaqI	TCGA	5 cut(s)	627, 758, 763, 1662, 1929
TasI	AATT	7 cut(s)	529, 546, 569, 1086, 1994, 2051, 2202
TatI	WGTACW	3 cut(s)	486, 697, 1779
TfiI	GAWTC	4 cut(s)	214, 760, 1985, 2111
Tru1I	TTAA	4 cut(s)	549, 1271, 2054, 2223
Tru9I	TTAA	4 cut(s)	549, 1271, 2054, 2223
TseFI	GTSAC	2 cut(s)	295, 1010
TseI	GCWGC	4 cut(s)	618, 1259, 1319, 1676
Tsp45I	GTSAC	2 cut(s)	295, 1010
TspGWI	ACGGA	1 cut(s)	645
Van91I	CCANNNNNTGG	1 cut(s)	1843
VpaK11BI	GGWCC	2 cut(s)	147, 1094
VspI	ATTAAT	1 cut(s)	549
XapI	RAATTY	4 cut(s)	569, 1086, 1994, 2202
XceI	RCATGY	3 cut(s)	393, 889, 910
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2074
XhoI	CTCGAG	1 cut(s)	1661
XmiI	GTMKAC	2 cut(s)	285, 2213
XspI	CTAG	3 cut(s)	386, 558, 852
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.