Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

76512841 .. 76523376

Gene Structure 10536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG537400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGTGAACACTGTCCTGTCTTTGCTGGCGGTTGATTACCCAGCTCACAAGCTAGCTTGCTACGTATCCGATGACGGGTGTTCCCCCCTCACCCTTTTTTCTCTCATTGAAGCCTCAAAGTTTGCTAGGATTTGGGTTCCCTTCTGTAAAAAGCATGGCATTCAAGTAAGGGCACCTTTCAGATACTTCTCTGCGGACGAGTTCACATTGCGAAGTGATAGTACACTGGAGTTGCTTCTAGAACGGACAAAAGTGAAGGATGAGTATGAAAATCTCTGCCAAAAGATTAAAGATGCAGACCACCATTCGGTACCCCTTGATATTTCTGAAGACTATGCAACTTTTGCCCACAAACAGACTAATAACCATCCTACAGTGATCAAGACTTTCAAATTTTATGTAGCCCGAGAAAAGCGTCTGAATCACCCACATCATTACAAAGCCGGGGCGATGAATGTTTTGACCAGGGTCTCTGGGGTGATGACAAATGCTCCATTTATGTTGAACGTGGACTGCGATATGTATGCCAGCAATTCGAAAATTGTTCTTCACGCAATGTGCTTATTGCTGGGTTTCAATCATGAAAAACAAGGTGCATTCGTGATTCGTTCAATGTCCCCAAATCTGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

210

Amino Acids

23.9

Weight (kDa)

8.48

Isoelectric Point (pI)

39.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 200	5.4e-50	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	2 cut(s)	172, 310
AciI	CCGC	2 cut(s)	29, 194
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	2 cut(s)	223, 312
AfiI	CCNNNNNNNGG	2 cut(s)	75, 307
AgsI	TTSAA	6 cut(s)	110, 164, 391, 505, 577, 612
AjnI	CCWGG	1 cut(s)	464
AluBI	AGCT	3 cut(s)	44, 52, 56
AluI	AGCT	3 cut(s)	44, 52, 56
Alw26I	GTCTC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	405
ApoI	RAATTY	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	4 cut(s)	16, 82, 416, 490
AsuII	TTCGAA	1 cut(s)	536
AsuNHI	GCTAGC	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	2 cut(s)	172, 310
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	1 cut(s)	375
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciT130I	CCWGG	1 cut(s)	466
BciVI	GTATCC	1 cut(s)	76
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	3 cut(s)	53, 126, 239
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	76
Bme1390I	CCNGG	2 cut(s)	445, 466
BmeT110I	CYCGRG	1 cut(s)	405
BmiI	GGNNCC	3 cut(s)	138, 174, 312
BmrFI	CCNGG	2 cut(s)	445, 466
BmsI	GCATC	1 cut(s)	283
BmtI	GCTAGC	1 cut(s)	56
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	248
Bpu14I	TTCGAA	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	475
BsaJI	CCNNGG	2 cut(s)	444, 465
BsaXI	ACNNNNNCTCC	2 cut(s)	475, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 307
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	206, 561
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	444, 465
BseGI	GGATG	2 cut(s)	265, 367
BseLI	CCNNNNNNNGG	2 cut(s)	75, 307
BseMI	GCAATG	2 cut(s)	206, 561
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	175
BseYI	CCCAGC	2 cut(s)	40, 568
BshNI	GGYRCC	2 cut(s)	172, 310
BsiHKCI	CYCGRG	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	75, 307
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	2 cut(s)	159, 596
Bso31I	GGTCTC	1 cut(s)	475
BsoBI	CYCGRG	1 cut(s)	405
Bsp119I	TTCGAA	1 cut(s)	536
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	29, 194
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	3 cut(s)	138, 174, 312
BspOI	GCTAGC	1 cut(s)	56
BspT104I	TTCGAA	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	172, 310
BspTNI	GGTCTC	1 cut(s)	475
BsrDI	GCAATG	2 cut(s)	206, 561
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	2 cut(s)	444, 465
BssMI	GATC	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	2 cut(s)	13, 376
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	4 cut(s)	27, 54, 58, 529
BstF5I	GGATG	2 cut(s)	265, 367
BstKTI	GATC	1 cut(s)	381
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNI	CCWGG	1 cut(s)	466
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	443, 464
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	265, 367
BtsIMutI	CAGTG	3 cut(s)	9, 224, 381
Cac8I	GCNNGC	4 cut(s)	27, 54, 58, 529
CciI	TCATGA	1 cut(s)	580
CseI	GACGC	1 cut(s)	404
Csp6I	GTAC	2 cut(s)	222, 311
CviAII	CATG	2 cut(s)	155, 581
CviJI	RGCY	6 cut(s)	44, 52, 56, 113, 404, 443
CviKI_1	RGCY	6 cut(s)	44, 52, 56, 113, 404, 443
CviQI	GTAC	2 cut(s)	222, 311
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	464
FaeI	CATG	2 cut(s)	158, 584
FaiI	YATR	9 cut(s)	156, 267, 336, 399, 500, 521, 525, 582, 631
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	2 cut(s)	154, 580
FbaI	TGATCA	1 cut(s)	378
FokI	GGATG	2 cut(s)	272, 354
FspBI	CTAG	3 cut(s)	53, 126, 239
GsaI	CCCAGC	2 cut(s)	44, 572
GsuI	CTGGAG	1 cut(s)	248
HapII	CCGG	1 cut(s)	444
HgaI	GACGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	158, 584
HinfI	GANTC	2 cut(s)	421, 604
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	4 cut(s)	16, 82, 416, 490
Hpy166II	GTNNAC	4 cut(s)	7, 204, 224, 511
Hpy188I	TCNGA	4 cut(s)	70, 182, 328, 420
Hpy188III	TCNNGA	4 cut(s)	239, 382, 581, 601
Hpy8I	GTNNAC	4 cut(s)	7, 204, 224, 511
HpyAV	CCTTC	2 cut(s)	151, 250
HpyCH4III	ACNGT	2 cut(s)	13, 376
HpyCH4IV	ACGT	2 cut(s)	63, 507
HpyCH4V	TGCA	3 cut(s)	296, 338, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpySE526I	ACGT	2 cut(s)	63, 507
Hsp92II	CATG	2 cut(s)	158, 584
KpnI	GGTACC	1 cut(s)	314
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	496
LweI	GCATC	1 cut(s)	283
MaeI	CTAG	3 cut(s)	53, 126, 239
MaeII	ACGT	2 cut(s)	63, 507
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MboII	GAAGA	2 cut(s)	341, 539
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	3 cut(s)	392, 532, 540
MnlI	CCTC	2 cut(s)	98, 124
MseI	TTAA	1 cut(s)	288
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	2 cut(s)	445, 466
Mva1269I	GAATGC	2 cut(s)	159, 596
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	1 cut(s)	344
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	1 cut(s)	378
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	158, 584
NlaIV	GGNNCC	3 cut(s)	138, 174, 312
NspV	TTCGAA	1 cut(s)	536
PagI	TCATGA	1 cut(s)	580
PcsI	WCGNNNNNNNCGW	1 cut(s)	513
PctI	GAATGC	2 cut(s)	159, 596
PfeI	GAWTC	2 cut(s)	421, 604
Ppu21I	YACGTR	1 cut(s)	64
PshAI	GACNNNNGTC	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	2 cut(s)	40, 568
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	3 cut(s)	138, 174, 312
RsaI	GTAC	2 cut(s)	223, 312
RsaNI	GTAC	2 cut(s)	222, 311
SaqAI	TTAA	1 cut(s)	288
Sau3AI	GATC	1 cut(s)	378
ScrFI	CCNGG	2 cut(s)	445, 466
SduI	GDGCHC	1 cut(s)	175
SetI	ASST	7 cut(s)	46, 54, 58, 66, 178, 510, 595
SfaNI	GCATC	1 cut(s)	283
SfcI	CTRYAG	1 cut(s)	372
SfuI	TTCGAA	1 cut(s)	536
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	3 cut(s)	392, 532, 540
SsiI	CCGC	2 cut(s)	29, 194
SspMI	CTAG	3 cut(s)	53, 126, 239
StyD4I	CCNGG	2 cut(s)	443, 464
TaaI	ACNGT	2 cut(s)	13, 376
TaiI	ACGT	2 cut(s)	66, 510
TaqI	TCGA	1 cut(s)	536
TasI	AATT	3 cut(s)	392, 532, 540
TatI	WGTACW	1 cut(s)	221
TfiI	GAWTC	2 cut(s)	421, 604
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	3 cut(s)	16, 231, 381
TspDTI	ATGAA	3 cut(s)	282, 467, 597
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	3 cut(s)	16, 231, 381
XapI	RAATTY	1 cut(s)	392
XbaI	TCTAGA	1 cut(s)	238
XspI	CTAG	3 cut(s)	53, 126, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.