Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

78894284 .. 78904269

Gene Structure 9986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG560200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGCAGGTTCTCTATCTCTTCCTCTATGTGAAAAAACCAGTGTTAAAGTTTGTACACTGCGGAGAGCCCTAGAAATTGTAATTTCATTCCTCTTCATCTGTCTCCTTGCTTATCGTCTCTTCTCTCTCACTGACCATGGCATTCCATGGCTTCTCGCCTTCCTCTGCGAGTCTTGGTTTGCCATCAATTGGGCTCTCAACCTCATCATCCTATGGACTCCCATGGATTACAAAACGTACCCCAACAATCTCTTGCAACAGGTGCCGGAGCTTCCTGCGGTGGACCTGTTTGTATCAACGGCAGATCCAGTGCTAGAGCCGCTTATCGTCACGGTGAACACTGTCCTGTCTTTGCTGGCAGTTGATTACCCAGCCCACAAGCTAGCTTGCTACGTATCGGATGACGGGTGTTCCCCCCTCACCCTTTTTTCTCTCATTGAAGCCTCAAAGTTTGCTAGGATTTGGGTTCCCTTCTGTAAAAAGCATGACATTCAAGTAAGGGCACCTTTCAGATACTTCTCTGCGGACAAGTCCACATTGCGAAGTGATAGTCCACCGGAGTTGCTTCTAGAACGGACAAAAGTGAAGGATGAGTATGAAAATCTCTGCCAAAAGATTAAAGATGCAGGCCACCATCCGGTACCCCTTGATATTTCTGAAGACTATGCAACTTTTGCTCACAAACAGACTAATAACCATCCTACAGTGATCAAGGTAATATGGGACAACAAACGAAGACTTTCAAATGGATTACCACATTTAGTTTATGTAGCCCGAGAAAAGCGTCCGAATCACCCACATCATTACAAAGCCGGGGCGATGAATGTTTTGACCAGGGTCTCTGGGGTGATGACAAATGCTCCATTTATGTTGAACGTGGACTGCGATATGTATGCCAGCAATTCGAAAATTGTTCTTCACGCAATGTGCTTATTGCTGGGTTTCAATCATGAAAAACAAGGTGCATTCGTTCAATGTCCCCAAATCTGCTATGACTATTTGAAAGATGACCCATTTGGAAACTCAATGACCTTGCCTTTAAAAACTTTTTGGCCAGGGATTGCTGGGATTCAAGGACCACTGTATGCAGGAACTGGATGTTTTCACAGACGTAAAGTTATCTATGGTTTATCCCTACAGGATAGTACAGGTCATATTCAAGGAAATTTGGACATTGAGGCACTGAAAGACCGGTTCGGAAATTCCATGGAGCTCGTTAGCTCAGCAACTAAGATTTTAGCAGAAAAAATTGATCATCCACATGACCTATCCAGTGCTGTTGAAGAGGCATGTAAAGTTGCTAGCTGTGGGTATGAGCATAGCACATCCTGGGGAAAACAGGTAGGCTGGATTTATGGGTCGATAACTGAAGACCTTCTAACCGGGATGAAGATCCATGCAAAGGGATGGAAATCCATCTTATGCATGCTAGATCCACCCGGCTTTGTTGGGTCTGCACCTAAAAGTGTGCCAGTTATGCTAACCCAAAGGAAGAGGTGGATCACAGGACTCCTAGAAATTTTGTTCAGCAAAAACAGTCCTATCTTTTCCACCCTCAATGCCAAGCTCGAGTTTAGGATGTGCTTGGCTTACATTTGGATCCTAATATGGGGCTTACACTGTATCCCTGCTTTATGCTATTCTCTCCTGCCAGCCTACTGTATCATTACCAACTCTCATTTCCTTCCCAAGATAGGAGAACCGGCTCTCCTGATGTTTGCGGCTCTATATCTTGCTAACAACTTATACACTCTGTATTTTTACCTTGAATCTGGTCTATCAATCACTGCATGGTGGAATTATCAAAGAATGGGGTCACGAAGCACAGTATTATCGACAACTTCTTTGCTATTTGGGACCACGAGTGTGGTACTCAAGCTTGTGGGGGTTTCTGAGGTGGTATTTGAAGTCACACAAAAGGATGAATACTCCTCTAGTGATGATGATCATAATGCCAATGATGCTAATGCTGGCAAGTTCACTTTCGACGAGTCTCCAATATTTGTACCACCTACGACCCTCTTGTTTGTGCACTTAACAGCGTTGGCTATGAGATTGTTGGGAGTGAAATTACCAGCAGCTCTACAAGTGACGACAGGAGTTGGGGAGATAGTGTGCAGTTTGTGGGTGGTGATTTGCTTTTGGCCATTTTTGAGAGGGTTGTTTGGGAAAGGTAAATATGGAATTTCATCGTCCACTATACTCAAGTCGGGTGTGTTAGCTTTGCTTTTCACGCTCTGCTGTGGAAAATTCTCATTGCCGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

755

Amino Acids

84.22

Weight (kDa)

8.06

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	94 - 381	3.7e-83	Cellulose synthase
Cellulose_synt	PF03552	390 - 746	6.9e-66	Cellulose synthase
Glyco_trans_2_3	PF13632	446 - 576	1.5e-06	Glycosyl transferase family group 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	3 cut(s)	262, 502, 640
AccB7I	CCANNNNNTGG	1 cut(s)	189
AciI	CCGC	5 cut(s)	61, 278, 320, 524, 1721
AclWI	GGATC	6 cut(s)	299, 1387, 1427, 1508, 1594, 1607
AcoI	YGGCCR	2 cut(s)	1052, 2144
AcsI	RAATTY	5 cut(s)	1165, 1201, 1518, 2184, 2249
AcuI	CTGAAG	2 cut(s)	678, 1389
AfaI	GTAC	6 cut(s)	55, 239, 642, 1147, 1872, 2007
AfiI	CCNNNNNNNGG	5 cut(s)	189, 637, 1402, 1609, 1694
AgeI	ACCGGT	1 cut(s)	1191
AjnI	CCWGG	3 cut(s)	833, 1054, 1328
AjuI	GAANNNNNNNTTGG	2 cut(s)	1664, 1696
AleI	CACNNNNGTG	1 cut(s)	1865
AloI	GAACNNNNNNTCC	2 cut(s)	1692, 1724
Alw21I	GWGCWC	2 cut(s)	1215, 2034
Alw26I	GTCTC	4 cut(s)	107, 122, 844, 1998
Alw44I	GTGCAC	1 cut(s)	2030
AlwI	GGATC	6 cut(s)	299, 1387, 1427, 1508, 1594, 1607
AlwNI	CAGNNNCTG	1 cut(s)	1094
Ama87I	CYCGRG	2 cut(s)	774, 1568
AoxI	GGCC	3 cut(s)	628, 1052, 2144
ApaLI	GTGCAC	1 cut(s)	2030
ApeKI	GCWGC	1 cut(s)	2078
ApoI	RAATTY	5 cut(s)	1165, 1201, 1518, 2184, 2249
ArsI	GACNNNNNNTTYG	4 cut(s)	535, 567, 1828, 1860
AsiGI	ACCGGT	1 cut(s)	1191
Asp700I	GAANNNNTTC	2 cut(s)	739, 1374
Asp718I	GGTACC	1 cut(s)	640
AspS9I	GGNCC	3 cut(s)	283, 1076, 1857
AsuC2I	CCSGG	3 cut(s)	814, 1384, 1440
AsuHPI	GGTGA	5 cut(s)	346, 412, 785, 859, 2143
AsuII	TTCGAA	1 cut(s)	905
AsuNHI	GCTAGC	2 cut(s)	382, 1301
AvaI	CYCGRG	2 cut(s)	774, 1568
AvaII	GGWCC	3 cut(s)	283, 1076, 1857
BaeGI	GKGCMC	2 cut(s)	505, 2034
BalI	TGGCCA	2 cut(s)	1054, 2146
BamHI	GGATCC	1 cut(s)	1599
BanI	GGYRCC	3 cut(s)	262, 502, 640
BanII	GRGCYC	3 cut(s)	70, 196, 1215
BauI	CACGAG	1 cut(s)	1861
BbsI	GAAGAC	3 cut(s)	666, 742, 1377
Bbv12I	GWGCWC	2 cut(s)	1215, 2034
BbvI	GCAGC	1 cut(s)	2090
BccI	CCATC	5 cut(s)	191, 642, 705, 1401, 1424
BceAI	ACGGC	2 cut(s)	315, 2245
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	3 cut(s)	835, 1056, 1330
BciVI	GTATCC	1 cut(s)	1634
BclI	TGATCA	3 cut(s)	708, 1252, 1945
BcnI	CCSGG	3 cut(s)	814, 1384, 1440
BcoDI	GTCTC	4 cut(s)	107, 122, 844, 1998
BfaI	CTAG	9 cut(s)	71, 314, 383, 456, 569, 1302, 1430, 1514, 1935
BfmI	CTRYAG	2 cut(s)	702, 1136
BfuI	GTATCC	1 cut(s)	1634
BisI	GCNGC	3 cut(s)	320, 1722, 2079
BlpI	GCTNAGC	1 cut(s)	1222
BlsI	GCNGC	3 cut(s)	321, 1723, 2080
Bme1390I	CCNGG	6 cut(s)	814, 835, 1056, 1330, 1384, 1440
Bme18I	GGWCC	3 cut(s)	283, 1076, 1857
BmeT110I	CYCGRG	2 cut(s)	774, 1568
BmgT120I	GGNCC	3 cut(s)	283, 1076, 1857
BmiI	GGNNCC	6 cut(s)	264, 468, 504, 642, 1601, 1858
BmrFI	CCNGG	6 cut(s)	814, 835, 1056, 1330, 1384, 1440
BmsI	GCATC	2 cut(s)	613, 1951
BmtI	GCTAGC	2 cut(s)	386, 1305
BoxI	GACNNNNGTC	1 cut(s)	836
BpiI	GAAGAC	3 cut(s)	666, 742, 1377
Bpu1102I	GCTNAGC	1 cut(s)	1222
Bpu14I	TTCGAA	1 cut(s)	905
BpuEI	CTTGAG	2 cut(s)	1859, 2189
BpuMI	CCSGG	3 cut(s)	814, 1384, 1440
BsaAI	YACGTR	1 cut(s)	394
BsaBI	GATNNNNATC	3 cut(s)	1391, 1411, 1944
BsaI	GGTCTC	1 cut(s)	844
BsaJI	CCNNGG	8 cut(s)	136, 146, 222, 813, 834, 1055, 1206, 1329
BsaWI	WCCGGW	3 cut(s)	556, 637, 1191
BsaXI	ACNNNNNCTCC	6 cut(s)	844, 874, 1692, 1722, 2099, 2129
Bsc4I	CCNNNNNNNGG	5 cut(s)	189, 637, 1402, 1609, 1694
Bse118I	RCCGGY	2 cut(s)	1191, 1702
Bse1I	ACTGG	5 cut(s)	39, 308, 1099, 1272, 1472
Bse3DI	GCAATG	3 cut(s)	536, 930, 2255
Bse8I	GATNNNNATC	3 cut(s)	1391, 1411, 1944
BseBI	CCWGG	3 cut(s)	835, 1056, 1330
BseDI	CCNNGG	8 cut(s)	136, 146, 222, 813, 834, 1055, 1206, 1329
BseJI	GATNNNNATC	3 cut(s)	1391, 1411, 1944
BseLI	CCNNNNNNNGG	5 cut(s)	189, 637, 1402, 1609, 1694
BseMI	GCAATG	3 cut(s)	536, 930, 2255
BseMII	CTCAG	2 cut(s)	1236, 1884
BseNI	ACTGG	5 cut(s)	39, 308, 1099, 1272, 1472
BseRI	GAGGAG	1 cut(s)	1921
BseSI	GKGCMC	2 cut(s)	505, 2034
BseXI	GCAGC	1 cut(s)	2090
BseYI	CCCAGC	3 cut(s)	370, 937, 1064
BsgI	GTGCAG	2 cut(s)	1440, 2137
BshFI	GGCC	3 cut(s)	630, 1054, 2146
BshNI	GGYRCC	3 cut(s)	262, 502, 640
BshTI	ACCGGT	1 cut(s)	1191
BsiHKAI	GWGCWC	2 cut(s)	1215, 2034
BsiHKCI	CYCGRG	2 cut(s)	774, 1568
BsiSI	CCGG	8 cut(s)	266, 557, 638, 813, 1192, 1383, 1440, 1703
BslFI	GGGAC	3 cut(s)	737, 963, 1870
BslI	CCNNNNNNNGG	5 cut(s)	189, 637, 1402, 1609, 1694
BsmAI	GTCTC	4 cut(s)	107, 122, 844, 1998
BsmBI	CGTCTC	1 cut(s)	122
BsmFI	GGGAC	3 cut(s)	737, 963, 1870
BsmI	GAATGC	2 cut(s)	141, 965
BsnI	GGCC	3 cut(s)	630, 1054, 2146
Bso31I	GGTCTC	1 cut(s)	844
BsoBI	CYCGRG	2 cut(s)	774, 1568
Bsp119I	TTCGAA	1 cut(s)	905
Bsp1286I	GDGCHC	5 cut(s)	70, 196, 505, 1215, 2034
Bsp1407I	TGTACA	1 cut(s)	53
Bsp143I	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
Bsp1720I	GCTNAGC	1 cut(s)	1222
Bsp19I	CCATGG	4 cut(s)	136, 146, 222, 1206
BspACI	CCGC	5 cut(s)	61, 278, 320, 524, 1721
BspANI	GGCC	3 cut(s)	630, 1054, 2146
BspCNI	CTCAG	2 cut(s)	1235, 1885
BspHI	TCATGA	1 cut(s)	949
BspLI	GGNNCC	6 cut(s)	264, 468, 504, 642, 1601, 1858
BspOI	GCTAGC	2 cut(s)	386, 1305
BspPI	GGATC	6 cut(s)	299, 1387, 1427, 1508, 1594, 1607
BspT104I	TTCGAA	1 cut(s)	905
BspT107I	GGYRCC	3 cut(s)	262, 502, 640
BspTNI	GGTCTC	1 cut(s)	844
BsrDI	GCAATG	3 cut(s)	536, 930, 2255
BsrFI	RCCGGY	2 cut(s)	1191, 1702
BsrGI	TGTACA	1 cut(s)	53
BsrI	ACTGG	5 cut(s)	39, 308, 1099, 1272, 1472
BssAI	RCCGGY	2 cut(s)	1191, 1702
BssECI	CCNNGG	8 cut(s)	136, 146, 222, 813, 834, 1055, 1206, 1329
BssMI	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
BssSI	CACGAG	1 cut(s)	1861
BssT1I	CCWWGG	4 cut(s)	136, 146, 222, 1206
Bst2BI	CACGAG	1 cut(s)	1861
Bst2UI	CCWGG	3 cut(s)	835, 1056, 1330
Bst4CI	ACNGT	8 cut(s)	334, 343, 706, 1083, 1538, 1622, 1661, 1828
Bst6I	CTCTTC	5 cut(s)	24, 98, 125, 1278, 1487
BstAPI	GCANNNNNTGC	2 cut(s)	262, 674
BstAUI	TGTACA	1 cut(s)	53
BstBAI	YACGTR	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	905
BstC8I	GCNNGC	9 cut(s)	357, 384, 388, 628, 898, 1303, 1427, 1653, 1972
BstDEI	CTNAG	3 cut(s)	1222, 1230, 1893
BstDSI	CCRYGG	4 cut(s)	136, 146, 222, 1206
BstKTI	GATC	8 cut(s)	307, 711, 1255, 1395, 1435, 1503, 1602, 1948
BstMAI	GTCTC	4 cut(s)	107, 122, 844, 1998
BstMBI	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 319, 674, 1477, 1961, 2233
BstNI	CCWGG	3 cut(s)	835, 1056, 1330
BstNSI	RCATGY	2 cut(s)	1293, 1429
BstPAI	GACNNNNGTC	1 cut(s)	836
BstSCI	CCNGG	6 cut(s)	812, 833, 1054, 1328, 1382, 1438
BstSFI	CTRYAG	2 cut(s)	702, 1136
BstSLI	GKGCMC	2 cut(s)	505, 2034
BstSNI	TACGTA	1 cut(s)	394
BstV1I	GCAGC	1 cut(s)	2090
BstV2I	GAAGAC	3 cut(s)	666, 742, 1377
BstX2I	RGATCY	4 cut(s)	304, 1392, 1432, 1599
BstXI	CCANNNNNNTGG	1 cut(s)	1867
BstYI	RGATCY	4 cut(s)	304, 1392, 1432, 1599
BsuI	GTATCC	1 cut(s)	1634
BsuRI	GGCC	3 cut(s)	630, 1054, 2146
BtgI	CCRYGG	4 cut(s)	136, 146, 222, 1206
BtgZI	GCGATG	1 cut(s)	833
BtsI	GCAGTG	2 cut(s)	56, 1785
Cac8I	GCNNGC	9 cut(s)	357, 384, 388, 628, 898, 1303, 1427, 1653, 1972
CaiI	CAGNNNCTG	1 cut(s)	1094
CciI	TCATGA	1 cut(s)	949
Cfr10I	RCCGGY	2 cut(s)	1191, 1702
Cfr13I	GGNCC	3 cut(s)	283, 1076, 1857
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	6 cut(s)	54, 238, 641, 1146, 1871, 2006
CspAI	ACCGGT	1 cut(s)	1191
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviQI	GTAC	6 cut(s)	54, 238, 641, 1146, 1871, 2006
DdeI	CTNAG	3 cut(s)	1222, 1230, 1893
DpnI	GATC	8 cut(s)	306, 710, 1254, 1394, 1434, 1502, 1601, 1947
DpnII	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
DraI	TTTAAA	1 cut(s)	1041
EaeI	YGGCCR	2 cut(s)	1052, 2144
Eam1104I	CTCTTC	5 cut(s)	24, 98, 125, 1278, 1487
EarI	CTCTTC	5 cut(s)	24, 98, 125, 1278, 1487
Ecl136II	GAGCTC	1 cut(s)	1213
Eco105I	TACGTA	1 cut(s)	394
Eco130I	CCWWGG	4 cut(s)	136, 146, 222, 1206
Eco24I	GRGCYC	3 cut(s)	70, 196, 1215
Eco31I	GGTCTC	1 cut(s)	844
Eco47I	GGWCC	3 cut(s)	283, 1076, 1857
Eco53kI	GAGCTC	1 cut(s)	1213
Eco57I	CTGAAG	2 cut(s)	678, 1389
Eco88I	CYCGRG	2 cut(s)	774, 1568
EcoICRI	GAGCTC	1 cut(s)	1213
EcoRII	CCWGG	3 cut(s)	833, 1054, 1328
EcoT14I	CCWWGG	4 cut(s)	136, 146, 222, 1206
EcoT22I	ATGCAT	1 cut(s)	1427
EcoT38I	GRGCYC	3 cut(s)	70, 196, 1215
ErhI	CCWWGG	4 cut(s)	136, 146, 222, 1206
Esp3I	CGTCTC	1 cut(s)	122
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	3 cut(s)	737, 963, 1870
FbaI	TGATCA	3 cut(s)	708, 1252, 1945
Fnu4HI	GCNGC	3 cut(s)	320, 1722, 2079
FriOI	GRGCYC	3 cut(s)	70, 196, 1215
Fsp4HI	GCNGC	3 cut(s)	320, 1722, 2079
FspBI	CTAG	9 cut(s)	71, 314, 383, 456, 569, 1302, 1430, 1514, 1935
GluI	GCNGC	3 cut(s)	320, 1722, 2079
GsaI	CCCAGC	3 cut(s)	374, 941, 1068
HaeIII	GGCC	3 cut(s)	630, 1054, 2146
HapII	CCGG	8 cut(s)	266, 557, 638, 813, 1192, 1383, 1440, 1703
HgaI	GACGC	1 cut(s)	773
HindIII	AAGCTT	1 cut(s)	1877
HinfI	GANTC	7 cut(s)	170, 217, 790, 1069, 1509, 1769, 1991
HpaII	CCGG	8 cut(s)	266, 557, 638, 813, 1192, 1383, 1440, 1703
HphI	GGTGA	5 cut(s)	346, 412, 785, 859, 2143
Hpy166II	GTNNAC	9 cut(s)	56, 283, 337, 534, 554, 880, 1980, 2032, 2196
Hpy188I	TCNGA	6 cut(s)	400, 512, 658, 789, 1199, 1894
Hpy188III	TCNNGA	4 cut(s)	569, 950, 1711, 1818
Hpy8I	GTNNAC	9 cut(s)	56, 283, 337, 534, 554, 880, 1980, 2032, 2196
Hpy99I	CGWCG	1 cut(s)	1991
HpyAV	CCTTC	5 cut(s)	169, 481, 580, 1385, 1694
HpyCH4III	ACNGT	8 cut(s)	334, 343, 706, 1083, 1538, 1622, 1661, 1828
HpyCH4IV	ACGT	4 cut(s)	236, 393, 876, 1111
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 319, 674, 1477, 1961, 2233
HpyF3I	CTNAG	3 cut(s)	1222, 1230, 1893
HpySE526I	ACGT	4 cut(s)	236, 393, 876, 1111
KpnI	GGTACC	1 cut(s)	644
Ksp22I	TGATCA	3 cut(s)	708, 1252, 1945
Kzo9I	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
LmnI	GCTCC	3 cut(s)	268, 865, 1210
Lsp1109I	GCAGC	1 cut(s)	2090
LweI	GCATC	2 cut(s)	613, 1951
MaeI	CTAG	9 cut(s)	71, 314, 383, 456, 569, 1302, 1430, 1514, 1935
MaeII	ACGT	4 cut(s)	236, 393, 876, 1111
MaeIII	GTNAC	4 cut(s)	328, 1815, 1909, 2089
MalI	GATC	8 cut(s)	306, 710, 1254, 1394, 1434, 1502, 1601, 1947
MboI	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	4 cut(s)	304, 1392, 1432, 1599
MhlI	GDGCHC	5 cut(s)	70, 196, 505, 1215, 2034
MlsI	TGGCCA	2 cut(s)	1054, 2146
MluNI	TGGCCA	2 cut(s)	1054, 2146
MlyI	GAGTC	4 cut(s)	179, 211, 1503, 2000
Mox20I	TGGCCA	2 cut(s)	1054, 2146
Mph1103I	ATGCAT	1 cut(s)	1427
MroXI	GAANNNNTTC	2 cut(s)	739, 1374
MscI	TGGCCA	2 cut(s)	1054, 2146
MseI	TTAA	4 cut(s)	45, 618, 1040, 2036
MslI	CAYNNNNRTG	2 cut(s)	1260, 1865
Msp20I	TGGCCA	2 cut(s)	1054, 2146
MspI	CCGG	8 cut(s)	266, 557, 638, 813, 1192, 1383, 1440, 1703
MspR9I	CCNGG	6 cut(s)	814, 835, 1056, 1330, 1384, 1440
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	2 cut(s)	141, 965
MvaI	CCWGG	3 cut(s)	835, 1056, 1330
MwoI	GCNNNNNNNGC	6 cut(s)	262, 319, 674, 1477, 1961, 2233
NciI	CCSGG	3 cut(s)	814, 1384, 1440
NcoI	CCATGG	4 cut(s)	136, 146, 222, 1206
NdeII	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
NheI	GCTAGC	2 cut(s)	382, 1301
NlaIV	GGNNCC	6 cut(s)	264, 468, 504, 642, 1601, 1858
NmuCI	GTSAC	4 cut(s)	328, 1815, 1909, 2089
NsiI	ATGCAT	1 cut(s)	1427
NspI	RCATGY	2 cut(s)	1293, 1429
NspV	TTCGAA	1 cut(s)	905
OliI	CACNNNNGTG	1 cut(s)	1865
PaeI	GCATGC	1 cut(s)	1429
PaeR7I	CTCGAG	1 cut(s)	1568
PagI	TCATGA	1 cut(s)	949
PcsI	WCGNNNNNNNCGW	1 cut(s)	882
PctI	GAATGC	2 cut(s)	141, 965
PdmI	GAANNNNTTC	2 cut(s)	739, 1374
PfeI	GAWTC	3 cut(s)	790, 1069, 1769
PflMI	CCANNNNNTGG	1 cut(s)	189
PinAI	ACCGGT	1 cut(s)	1191
PkrI	GCNGC	3 cut(s)	321, 1723, 2080
PleI	GAGTC	4 cut(s)	178, 211, 1503, 1999
PpsI	GAGTC	4 cut(s)	178, 211, 1503, 1999
Ppu21I	YACGTR	1 cut(s)	394
PshAI	GACNNNNGTC	1 cut(s)	836
Psp124BI	GAGCTC	1 cut(s)	1215
Psp6I	CCWGG	3 cut(s)	833, 1054, 1328
PspFI	CCCAGC	3 cut(s)	370, 937, 1064
PspGI	CCWGG	3 cut(s)	833, 1054, 1328
PspN4I	GGNNCC	6 cut(s)	264, 468, 504, 642, 1601, 1858
PspPI	GGNCC	3 cut(s)	283, 1076, 1857
PspXI	VCTCGAGB	1 cut(s)	1568
PstNI	CAGNNNCTG	1 cut(s)	1094
PsuI	RGATCY	4 cut(s)	304, 1392, 1432, 1599
RsaI	GTAC	6 cut(s)	55, 239, 642, 1147, 1872, 2007
RsaNI	GTAC	6 cut(s)	54, 238, 641, 1146, 1871, 2006
RseI	CAYNNNNRTG	2 cut(s)	1260, 1865
SacI	GAGCTC	1 cut(s)	1215
SaqAI	TTAA	4 cut(s)	45, 618, 1040, 2036
SatI	GCNGC	3 cut(s)	320, 1722, 2079
Sau3AI	GATC	8 cut(s)	304, 708, 1252, 1392, 1432, 1500, 1599, 1945
Sau96I	GGNCC	3 cut(s)	283, 1076, 1857
SchI	GAGTC	4 cut(s)	179, 211, 1503, 2000
ScrFI	CCNGG	6 cut(s)	814, 835, 1056, 1330, 1384, 1440
SduI	GDGCHC	5 cut(s)	70, 196, 505, 1215, 2034
SfaNI	GCATC	2 cut(s)	613, 1951
SfcI	CTRYAG	2 cut(s)	702, 1136
Sfr274I	CTCGAG	1 cut(s)	1568
SfuI	TTCGAA	1 cut(s)	905
SinI	GGWCC	3 cut(s)	283, 1076, 1857
SlaI	CTCGAG	1 cut(s)	1568
SmiMI	CAYNNNNRTG	2 cut(s)	1260, 1865
SmlI	CTYRAG	3 cut(s)	1568, 1874, 2204
SmoI	CTYRAG	3 cut(s)	1568, 1874, 2204
SnaBI	TACGTA	1 cut(s)	394
SphI	GCATGC	1 cut(s)	1429
SsiI	CCGC	5 cut(s)	61, 278, 320, 524, 1721
SspI	AATATT	1 cut(s)	2001
SspMI	CTAG	9 cut(s)	71, 314, 383, 456, 569, 1302, 1430, 1514, 1935
SstI	GAGCTC	1 cut(s)	1215
StyD4I	CCNGG	6 cut(s)	812, 833, 1054, 1328, 1382, 1438
StyI	CCWWGG	4 cut(s)	136, 146, 222, 1206
TaaI	ACNGT	8 cut(s)	334, 343, 706, 1083, 1538, 1622, 1661, 1828
TaiI	ACGT	4 cut(s)	239, 396, 879, 1114
TaqI	TCGA	5 cut(s)	905, 1361, 1569, 1835, 1986
TatI	WGTACW	2 cut(s)	53, 1145
TauI	GCSGC	2 cut(s)	322, 1724
TfiI	GAWTC	3 cut(s)	790, 1069, 1769
Tru1I	TTAA	4 cut(s)	45, 618, 1040, 2036
Tru9I	TTAA	4 cut(s)	45, 618, 1040, 2036
TseFI	GTSAC	4 cut(s)	328, 1815, 1909, 2089
TseI	GCWGC	1 cut(s)	2078
Tsp45I	GTSAC	4 cut(s)	328, 1815, 1909, 2089
TspDTI	ATGAA	8 cut(s)	75, 85, 612, 836, 966, 1403, 1938, 2178
TspGWI	ACGGA	1 cut(s)	589
Van91I	CCANNNNNTGG	1 cut(s)	189
VneI	GTGCAC	1 cut(s)	2030
VpaK11BI	GGWCC	3 cut(s)	283, 1076, 1857
XapI	RAATTY	5 cut(s)	1165, 1201, 1518, 2184, 2249
XbaI	TCTAGA	1 cut(s)	568
XceI	RCATGY	2 cut(s)	1293, 1429
XhoI	CTCGAG	1 cut(s)	1568
XmnI	GAANNNNTTC	2 cut(s)	739, 1374
XspI	CTAG	9 cut(s)	71, 314, 383, 456, 569, 1302, 1430, 1514, 1935
Zsp2I	ATGCAT	1 cut(s)	1427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.