Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004188.1

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

33177 .. 33584

Gene Structure 408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004188.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atgagtgtggtactcaagcttgtggggatttctgaggtggtatttgaagtcacacaaaaggatgaatattcctctagtgatgatgatcacaatgccaatgatgctaatgctggcaagttcactttcgacgagtctccaatatttgtaccacctacgaccctcttgtttgtgcacttaacagcgttggctatgagattgttgggagtgaaattaccagcagctctacaagtgacgacaggagttggggagatagtgtgcagattgtgggtggtgatttgcttttggccatttttgagagggttgtttgggaaaggtaaatatggaatttcatcgtccactatactcaagtcgggtgtgttagctttgcttttcacgctctgctgtggaaaattctcattgccattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

135

Amino Acids

14.64

Weight (kDa)

6.7

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	2 cut(s)	324, 389
AfaI	GTAC	2 cut(s)	12, 147
AgsI	TTSAA	1 cut(s)	47
AluBI	AGCT	3 cut(s)	19, 221, 362
AluI	AGCT	3 cut(s)	19, 221, 362
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	138
Alw44I	GTGCAC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	284
ApaLI	GTGCAC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	218
ApoI	RAATTY	2 cut(s)	324, 389
AsuHPI	GGTGA	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	230
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	1 cut(s)	75
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	84
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse3DI	GCAATG	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	84
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	1 cut(s)	24
BseSI	GKGCMC	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	230
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	286
BsiHKAI	GWGCWC	1 cut(s)	174
BsmAI	GTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	1 cut(s)	85
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	25
BsrDI	GCAATG	1 cut(s)	395
BssMI	GATC	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	1 cut(s)	88
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 373
BstSLI	GKGCMC	1 cut(s)	174
BstV1I	GCAGC	1 cut(s)	230
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	11, 146
CviJI	RGCY	5 cut(s)	19, 188, 221, 286, 362
CviKI_1	RGCY	5 cut(s)	19, 188, 221, 286, 362
CviQI	GTAC	2 cut(s)	11, 146
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	284
FaiI	YATR	3 cut(s)	191, 321, 341
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	75
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	17
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	1 cut(s)	283
Hpy166II	GTNNAC	3 cut(s)	120, 172, 336
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	3 cut(s)	120, 172, 336
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	172, 258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 373
HpyF3I	CTNAG	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	96, 222, 228
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	49, 229
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MhlI	GDGCHC	1 cut(s)	174
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	3 cut(s)	209, 324, 389
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	4 cut(s)	28, 82, 170, 290
Mox20I	TGGCCA	1 cut(s)	286
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	286
MwoI	GCNNNNNNNGC	2 cut(s)	101, 373
NdeII	GATC	1 cut(s)	85
NmuCI	GTSAC	2 cut(s)	49, 229
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
RsaI	GTAC	2 cut(s)	12, 147
RsaNI	GTAC	2 cut(s)	11, 146
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	6 cut(s)	21, 39, 154, 223, 316, 364
SfaNI	GCATC	1 cut(s)	91
SmlI	CTYRAG	2 cut(s)	14, 344
SmoI	CTYRAG	2 cut(s)	14, 344
Sse9I	AATT	3 cut(s)	209, 324, 389
SspI	AATATT	2 cut(s)	68, 141
SspMI	CTAG	1 cut(s)	75
TaqI	TCGA	1 cut(s)	126
TasI	AATT	3 cut(s)	209, 324, 389
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	2 cut(s)	49, 229
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	2 cut(s)	49, 229
TspDTI	ATGAA	2 cut(s)	78, 318
VneI	GTGCAC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	324, 389
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.