Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8470225.1

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1768

Gene Structure 1768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8470225.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgatgaacggtaaatcagccgatgaagaattacgtgaagtgtttggtaaggaatttaccaaatcagctgttgatgctttgaacgggaaggcagcatgtcctgacatgcttacagaaactattgaggctgcataccaagttactggtgttggatatgagtatggcacacactggggcaaaaaggtgggatggatgtatggatccacagttgaagatatcctcactgggctttcaatccataacaaaggttggagatccattgtatatgcaccagacccaccagcctttctaggattcgcgcctaccggtgggcctgcttcaatgacccaacaaaaaaggtgggccaccggcctgtttgaaatcctcctcagtaaaaactgccccatatttggtactctctttgcaaacctccagttcaggcagtgcttgggctacttctgtatccttacatgggggctacgctcagttctcgagttaaactatgctgctttgccagcctatagtatcatcaccaactcaaacttcttgccgaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

178

Amino Acids

19.62

Weight (kDa)

6.72

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	299
AclWI	GGATC	3 cut(s)	195, 208, 249
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	1 cut(s)	394
AfiI	CCNNNNNNNGG	3 cut(s)	308, 389, 451
AgeI	ACCGGT	1 cut(s)	305
AgsI	TTSAA	5 cut(s)	82, 212, 234, 321, 359
AjuI	GAANNNNNNNTTGG	1 cut(s)	506
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	3 cut(s)	195, 208, 249
Ama87I	CYCGRG	1 cut(s)	470
AoxI	GGCC	3 cut(s)	311, 342, 349
ApeKI	GCWGC	3 cut(s)	92, 128, 485
ApoI	RAATTY	1 cut(s)	53
AsiGI	ACCGGT	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	301
AspS9I	GGNCC	2 cut(s)	311, 342
AsuHPI	GGTGA	1 cut(s)	502
AvaI	CYCGRG	1 cut(s)	470
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BamHI	GGATCC	1 cut(s)	200
BbvI	GCAGC	3 cut(s)	104, 115, 472
BccI	CCATC	1 cut(s)	183
BciVI	GTATCC	1 cut(s)	452
BfaI	CTAG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	452
BisI	GCNGC	3 cut(s)	93, 129, 486
BlsI	GCNGC	3 cut(s)	94, 130, 487
BmeT110I	CYCGRG	1 cut(s)	470
BmgT120I	GGNCC	2 cut(s)	311, 342
BmiI	GGNNCC	1 cut(s)	202
BmrI	ACTGGG	2 cut(s)	181, 234
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	2 cut(s)	181, 234
BpmI	CTGGAG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 389, 451
Bse118I	RCCGGY	2 cut(s)	305, 347
Bse1I	ACTGG	4 cut(s)	148, 176, 229, 412
BseGI	GGATG	2 cut(s)	194, 198
BseLI	CCNNNNNNNGG	3 cut(s)	308, 389, 451
BseMII	CTCAG	2 cut(s)	382, 477
BseNI	ACTGG	4 cut(s)	148, 176, 229, 412
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	104, 115, 472
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	3 cut(s)	313, 344, 351
BshTI	ACCGGT	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	470
BsiSI	CCGG	2 cut(s)	306, 348
BslI	CCNNNNNNNGG	3 cut(s)	308, 389, 451
BsnI	GGCC	3 cut(s)	313, 344, 351
BsoBI	CYCGRG	1 cut(s)	470
Bsp143I	GATC	2 cut(s)	200, 254
BspANI	GGCC	3 cut(s)	313, 344, 351
BspCNI	CTCAG	2 cut(s)	381, 476
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	195, 208, 249
BsrFI	RCCGGY	2 cut(s)	305, 347
BsrI	ACTGG	4 cut(s)	148, 176, 229, 412
BssAI	RCCGGY	2 cut(s)	305, 347
BssMI	GATC	2 cut(s)	200, 254
Bst4CI	ACNGT	2 cut(s)	11, 208
BstBAI	YACGTR	1 cut(s)	35
BstC8I	GCNNGC	2 cut(s)	315, 495
BstDEI	CTNAG	2 cut(s)	368, 463
BstF5I	GGATG	2 cut(s)	194, 198
BstFNI	CGCG	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	301
BstKTI	GATC	2 cut(s)	203, 257
BstMBI	GATC	2 cut(s)	200, 254
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 494
BstNSI	RCATGY	2 cut(s)	99, 109
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	3 cut(s)	104, 115, 472
BstX2I	RGATCY	2 cut(s)	200, 254
BstXI	CCANNNNNNTGG	1 cut(s)	143
BstYI	RGATCY	2 cut(s)	200, 254
BsuI	GTATCC	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	313, 344, 351
BtsCI	GGATG	2 cut(s)	194, 198
BtsI	GCAGTG	1 cut(s)	428
BtsIMutI	CAGTG	3 cut(s)	169, 222, 428
Cac8I	GCNNGC	2 cut(s)	315, 495
CfoI	GCGC	1 cut(s)	301
Cfr10I	RCCGGY	2 cut(s)	305, 347
Cfr13I	GGNCC	2 cut(s)	311, 342
Csp6I	GTAC	1 cut(s)	393
CspAI	ACCGGT	1 cut(s)	305
CspCI	CAANNNNNGTGG	2 cut(s)	320, 355
CviAII	CATG	3 cut(s)	96, 106, 450
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	368, 463
DpnI	GATC	2 cut(s)	202, 256
DpnII	GATC	2 cut(s)	200, 254
Eco32I	GATATC	1 cut(s)	217
Eco88I	CYCGRG	1 cut(s)	470
EcoRV	GATATC	1 cut(s)	217
FaeI	CATG	3 cut(s)	99, 109, 453
FatI	CATG	3 cut(s)	95, 105, 449
Fnu4HI	GCNGC	3 cut(s)	93, 129, 486
FokI	GGATG	2 cut(s)	201, 205
Fsp4HI	GCNGC	3 cut(s)	93, 129, 486
FspBI	CTAG	1 cut(s)	290
GlaI	GCGC	1 cut(s)	300
GluI	GCNGC	3 cut(s)	93, 129, 486
GsuI	CTGGAG	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	313, 344, 351
HapII	CCGG	2 cut(s)	306, 348
HhaI	GCGC	1 cut(s)	301
Hin1II	CATG	3 cut(s)	99, 109, 453
Hin6I	GCGC	1 cut(s)	299
HinP1I	GCGC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	294
HpaII	CCGG	2 cut(s)	306, 348
HphI	GGTGA	1 cut(s)	502
Hpy188III	TCNNGA	2 cut(s)	101, 470
HpyAV	CCTTC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	11, 208
HpyCH4IV	ACGT	1 cut(s)	34
HpyCH4V	TGCA	3 cut(s)	131, 269, 404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 494
HpyF3I	CTNAG	2 cut(s)	368, 463
HpySE526I	ACGT	1 cut(s)	34
Hsp92II	CATG	3 cut(s)	99, 109, 453
HspAI	GCGC	1 cut(s)	299
Kzo9I	GATC	2 cut(s)	200, 254
Lsp1109I	GCAGC	3 cut(s)	104, 115, 472
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	290
MaeII	ACGT	1 cut(s)	34
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	2 cut(s)	202, 256
MboI	GATC	2 cut(s)	200, 254
MboII	GAAGA	2 cut(s)	38, 224
MflI	RGATCY	2 cut(s)	200, 254
MluCI	AATT	2 cut(s)	29, 53
MmeI	TCCRAC	2 cut(s)	130, 230
MnlI	CCTC	5 cut(s)	118, 230, 374, 377, 419
MseI	TTAA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	2 cut(s)	306, 348
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	74, 494
NdeII	GATC	2 cut(s)	200, 254
NlaIII	CATG	3 cut(s)	99, 109, 453
NlaIV	GGNNCC	1 cut(s)	202
NspI	RCATGY	2 cut(s)	99, 109
PaeR7I	CTCGAG	1 cut(s)	470
PfeI	GAWTC	1 cut(s)	294
PinAI	ACCGGT	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	94, 130, 487
Ppu21I	YACGTR	1 cut(s)	35
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	2 cut(s)	311, 342
PsuI	RGATCY	2 cut(s)	200, 254
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	3 cut(s)	93, 129, 486
Sau3AI	GATC	2 cut(s)	200, 254
Sau96I	GGNCC	2 cut(s)	311, 342
SetI	ASST	6 cut(s)	37, 70, 186, 250, 341, 411
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	499
Sfr274I	CTCGAG	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	29, 53
SspMI	CTAG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	11, 208
TaiI	ACGT	1 cut(s)	37
TaqI	TCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	29, 53
TfiI	GAWTC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	3 cut(s)	176, 229, 428
TseI	GCWGC	3 cut(s)	92, 128, 485
TspDTI	ATGAA	2 cut(s)	20, 39
TspRI	CASTG	3 cut(s)	176, 229, 428
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	2 cut(s)	99, 109
XhoI	CTCGAG	1 cut(s)	470
XspI	CTAG	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.