Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

76512227 .. 76512809

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG537300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACCTTGCCTTTAAAAACTTTTTGGCCAGGGATTGCTGGGATCCAAGGACCACTGTATGCAGGAACTGGATGTTTTCACAGACGTAAAGTTATCTATGGTTTATCCCTACAAGATAGTACAGGTCATATTCAAGGAAATTTAGTCGACGTTGAGGCACTGAAAGACCGGTTCGGAAATTCCATGGAGCTCGTTAGCTCAGCAACTAAGATTTTAGCAGAAAAAATTGATCATCCACAAGACCTATCCAGTGCTGTTGAAGAGGCATGTAAAGTTGCTAGCTGTGGGTATGAGCATAGCACATCCTGGGGAAAACAGGTTCAACAAACATTGTGTTCTTCCCCCACAAAATTGAAAAGAATTAAAACTAAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

125

Amino Acids

13.63

Weight (kDa)

8.95

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	47 - 108	8e-08	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AclWI	GGATC	2 cut(s)	37, 50
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	2 cut(s)	139, 178
AfaI	GTAC	1 cut(s)	121
AgeI	ACCGGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	134, 260, 323, 355
AjnI	CCWGG	2 cut(s)	28, 305
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	3 cut(s)	190, 198, 282
AluI	AGCT	3 cut(s)	190, 198, 282
Alw21I	GWGCWC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	37, 50
AlwNI	CAGNNNCTG	1 cut(s)	68
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	139, 178
AsiGI	ACCGGT	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	50
AsuNHI	GCTAGC	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	28
BamHI	GGATCC	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	30, 307
BclI	TGATCA	1 cut(s)	229
BfaI	CTAG	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	199
Bme1390I	CCNGG	2 cut(s)	30, 307
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	2 cut(s)	30, 307
BmtI	GCTAGC	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	199
BsaJI	CCNNGG	4 cut(s)	29, 46, 183, 306
BsaWI	WCCGGW	1 cut(s)	168
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	73, 249
BseBI	CCWGG	2 cut(s)	30, 307
BseDI	CCNNGG	4 cut(s)	29, 46, 183, 306
BseGI	GGATG	3 cut(s)	77, 232, 302
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	73, 249
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	28
BshTI	ACCGGT	1 cut(s)	168
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	169
BsnI	GGCC	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	42, 229
Bsp1720I	GCTNAGC	1 cut(s)	199
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	1 cut(s)	212
BspLI	GGNNCC	1 cut(s)	44
BspOI	GCTAGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	37, 50
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	73, 249
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	4 cut(s)	29, 46, 183, 306
BssMI	GATC	2 cut(s)	42, 229
BssT1I	CCWWGG	2 cut(s)	46, 183
Bst2UI	CCWGG	2 cut(s)	30, 307
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	199, 207
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	3 cut(s)	77, 232, 302
BstKTI	GATC	2 cut(s)	45, 232
BstMBI	GATC	2 cut(s)	42, 229
BstNI	CCWGG	2 cut(s)	30, 307
BstNSI	RCATGY	1 cut(s)	270
BstSCI	CCNGG	2 cut(s)	28, 305
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	1 cut(s)	28
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	77, 232, 302
BtsIMutI	CAGTG	3 cut(s)	53, 158, 256
Cac8I	GCNNGC	1 cut(s)	280
CaiI	CAGNNNCTG	1 cut(s)	68
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	120
CspAI	ACCGGT	1 cut(s)	168
CviAII	CATG	2 cut(s)	184, 267
CviJI	RGCY	4 cut(s)	28, 190, 198, 282
CviKI_1	RGCY	4 cut(s)	28, 190, 198, 282
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	199, 207
DpnI	GATC	2 cut(s)	44, 231
DpnII	GATC	2 cut(s)	42, 229
DraI	TTTAAA	1 cut(s)	15
EaeI	YGGCCR	1 cut(s)	26
Eam1104I	CTCTTC	1 cut(s)	255
EarI	CTCTTC	1 cut(s)	255
Ecl136II	GAGCTC	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	46, 183
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	1 cut(s)	190
EcoICRI	GAGCTC	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	28, 305
EcoT14I	CCWWGG	2 cut(s)	46, 183
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	2 cut(s)	46, 183
FaeI	CATG	2 cut(s)	187, 270
FaiI	YATR	7 cut(s)	60, 99, 129, 185, 268, 291, 297
FatI	CATG	2 cut(s)	183, 266
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	147
FokI	GGATG	3 cut(s)	84, 219, 289
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	279
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	2 cut(s)	187, 270
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	1 cut(s)	169
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	176, 377
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	152
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4IV	ACGT	2 cut(s)	85, 150
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	2 cut(s)	199, 207
HpySE526I	ACGT	2 cut(s)	85, 150
Hsp92II	CATG	2 cut(s)	187, 270
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	42, 229
LmnI	GCTCC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	85, 150
MalI	GATC	2 cut(s)	44, 231
MboI	GATC	2 cut(s)	42, 229
MboII	GAAGA	2 cut(s)	272, 330
MflI	RGATCY	1 cut(s)	42
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	28
MluCI	AATT	5 cut(s)	139, 178, 225, 350, 360
MluNI	TGGCCA	1 cut(s)	28
MnlI	CCTC	2 cut(s)	148, 256
Mox20I	TGGCCA	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	28
MseI	TTAA	2 cut(s)	14, 363
Msp20I	TGGCCA	1 cut(s)	28
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	30, 307
MvaI	CCWGG	2 cut(s)	30, 307
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	42, 229
NheI	GCTAGC	1 cut(s)	278
NlaIII	CATG	2 cut(s)	187, 270
NlaIV	GGNNCC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	270
PinAI	ACCGGT	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	28, 305
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	28, 305
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	1 cut(s)	50
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	14, 363
Sau3AI	GATC	2 cut(s)	42, 229
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	30, 307
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	8, 88, 127, 153, 192, 200, 246, 284, 321
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	5 cut(s)	139, 178, 225, 350, 360
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	192
StyD4I	CCNGG	2 cut(s)	28, 305
StyI	CCWWGG	2 cut(s)	46, 183
TaaI	ACNGT	1 cut(s)	57
TaiI	ACGT	2 cut(s)	88, 153
TaqI	TCGA	1 cut(s)	147
TasI	AATT	5 cut(s)	139, 178, 225, 350, 360
TatI	WGTACW	1 cut(s)	119
Tru1I	TTAA	2 cut(s)	14, 363
Tru9I	TTAA	2 cut(s)	14, 363
TscAI	CASTG	3 cut(s)	60, 165, 256
TspRI	CASTG	3 cut(s)	60, 165, 256
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	139, 178
XceI	RCATGY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.