Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

12666088 .. 12670906

Gene Structure 4819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCCCGACATGCTTACGAAACTATTGAGGCTGCATACCAAGTTACTGGTGTTGGATATGAGTATGGCACACACCGGGGCAAAAAGGTGGGATGGATGTATGGATCCACAGTTGAAGATGTCCTCACTGGGCTTTCAATCCATAACAAAGGTTGGAGATCCATTGTTTATGCACCAGACCCACCAGCCTTTCTAGGATTCGCGCCTACGGGTGGGCCTGCTTCAATGACCCAACAAAAAAGGTGGGCCACCGGCCTGTTTGAAATCCTCCTCAGTAAAAACTGCCCCATATTTGGTACTCTCTTTGCAAACCTCGAGTTCAGGCAGTGCTTGGGCTACTTCTGTATCCTTCCATGGGGGCTACGCTCAGTTCTCGAGCTACACTATGCTGCTTTGCCAGCCTATAGTATCATCACCAACTCAAACTTCTTGCCGAAGGGCCAAGAACCGGCTTACTATATACTCGTAGCTTTGTTTCTGATCTACACTATGTACACTTCATCAGAGTACCTTAGAACCGGTCAATCAATCCGAGCATGGTGGAATAACCAAAGAATGGGAAGAATAATCTCAATGAGTGCATGGCTTTTTGGATTTCTTAGTGTCATACTCAAACTCTTGGGCATATCCGAGACAGTCTTCGAGGTAACACGAAAAGACCAATCTACATCAAGCGATGAAGGCACTGAAGATACTGAAGCCGGAAAATTCACCTTTGACCAGTCCCCAGTTTTCATACCTCCCACAGCAATGTTGTTTCTGCAATTAACAGCACTGGCCACCGCTTTGTTGGGGCTTCAACCACCAGCCCGTGATGGGGTGGAATCAGGCTCTTTGGAGACCATGTGCAGTATTTTGTTGGTGGTATGCTTATTACCATTTTTGAAAGGTCTGTTTGGATCAGGAAAATATGGAATTCCTCTGTCTACCATATTTAAGTCTGCTGGTCTTGCACTACTCTTCTACACCTTGTGCAAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

327

Amino Acids

36.24

Weight (kDa)

8.12

Isoelectric Point (pI)

49.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	7 - 303	2.7e-48	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	556
AccI	GTMKAC	1 cut(s)	926
AccII	CGCG	1 cut(s)	203
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	4 cut(s)	99, 112, 153, 907
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	2 cut(s)	707, 915
AcuI	CTGAAG	2 cut(s)	708, 717
AdeI	CACNNNGTG	1 cut(s)	972
AfaI	GTAC	3 cut(s)	298, 494, 509
AfiI	CCNNNNNNNGG	7 cut(s)	212, 293, 355, 448, 556, 816, 817
AgeI	ACCGGT	1 cut(s)	518
AgsI	TTSAA	6 cut(s)	116, 138, 225, 263, 800, 886
AjuI	GAANNNNNNNTTGG	2 cut(s)	410, 442
AluBI	AGCT	2 cut(s)	379, 470
AluI	AGCT	2 cut(s)	379, 470
Alw26I	GTCTC	2 cut(s)	626, 833
AlwI	GGATC	4 cut(s)	99, 112, 153, 907
Ama87I	CYCGRG	2 cut(s)	314, 374
AoxI	GGCC	5 cut(s)	215, 246, 253, 439, 777
ApeKI	GCWGC	2 cut(s)	32, 389
ApoI	RAATTY	2 cut(s)	707, 915
AsiGI	ACCGGT	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	3 cut(s)	215, 246, 439
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	2 cut(s)	406, 703
AvaI	CYCGRG	2 cut(s)	314, 374
BaeI	ACNNNNGTAYC	2 cut(s)	328, 361
BalI	TGGCCA	1 cut(s)	779
BamHI	GGATCC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	631
BbvI	GCAGC	2 cut(s)	19, 376
BccI	CCATC	2 cut(s)	87, 809
BciVI	GTATCC	1 cut(s)	356
BcnI	CCSGG	1 cut(s)	77
BcoDI	GTCTC	2 cut(s)	626, 833
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	356
BisI	GCNGC	2 cut(s)	33, 390
BlsI	GCNGC	2 cut(s)	34, 391
Bme1390I	CCNGG	1 cut(s)	77
BmeT110I	CYCGRG	2 cut(s)	314, 374
BmgT120I	GGNCC	3 cut(s)	215, 246, 439
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	1 cut(s)	77
BmrI	ACTGGG	2 cut(s)	138, 722
BmuI	ACTGGG	2 cut(s)	138, 722
BpiI	GAAGAC	1 cut(s)	631
BpuMI	CCSGG	1 cut(s)	77
BsaI	GGTCTC	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	76, 353
BsaWI	WCCGGW	1 cut(s)	518
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	7 cut(s)	212, 293, 355, 448, 556, 816, 817
Bse118I	RCCGGY	3 cut(s)	251, 448, 518
Bse1I	ACTGG	5 cut(s)	52, 133, 721, 728, 780
Bse3DI	GCAATG	1 cut(s)	756
BseDI	CCNNGG	2 cut(s)	76, 353
BseGI	GGATG	2 cut(s)	98, 102
BseLI	CCNNNNNNNGG	7 cut(s)	212, 293, 355, 448, 556, 816, 817
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	286, 381
BseNI	ACTGG	5 cut(s)	52, 133, 721, 728, 780
BseRI	GAGGAG	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	19, 376
BsgI	GTGCAG	1 cut(s)	868
Bsh1236I	CGCG	1 cut(s)	203
BshFI	GGCC	5 cut(s)	217, 248, 255, 441, 779
BshTI	ACCGGT	1 cut(s)	518
BsiHKCI	CYCGRG	2 cut(s)	314, 374
BsiSI	CCGG	5 cut(s)	76, 252, 449, 519, 702
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	7 cut(s)	212, 293, 355, 448, 556, 816, 817
BsmAI	GTCTC	2 cut(s)	626, 833
BsmFI	GGGAC	1 cut(s)	709
BsnI	GGCC	5 cut(s)	217, 248, 255, 441, 779
Bso31I	GGTCTC	1 cut(s)	833
BsoBI	CYCGRG	2 cut(s)	314, 374
Bsp1407I	TGTACA	1 cut(s)	492
Bsp143I	GATC	4 cut(s)	104, 158, 480, 899
Bsp19I	CCATGG	1 cut(s)	353
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	5 cut(s)	217, 248, 255, 441, 779
BspCNI	CTCAG	2 cut(s)	285, 380
BspFNI	CGCG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	106
BspPI	GGATC	4 cut(s)	99, 112, 153, 907
BspTNI	GGTCTC	1 cut(s)	833
BsrDI	GCAATG	1 cut(s)	756
BsrFI	RCCGGY	3 cut(s)	251, 448, 518
BsrGI	TGTACA	1 cut(s)	492
BsrI	ACTGG	5 cut(s)	52, 133, 721, 728, 780
BssAI	RCCGGY	3 cut(s)	251, 448, 518
BssECI	CCNNGG	2 cut(s)	76, 353
BssMI	GATC	4 cut(s)	104, 158, 480, 899
BssT1I	CCWWGG	1 cut(s)	353
Bst4CI	ACNGT	2 cut(s)	112, 637
Bst6I	CTCTTC	1 cut(s)	965
BstAUI	TGTACA	1 cut(s)	492
BstC8I	GCNNGC	2 cut(s)	219, 399
BstDEI	CTNAG	4 cut(s)	272, 367, 512, 599
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	98, 102
BstFNI	CGCG	1 cut(s)	203
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	4 cut(s)	107, 161, 483, 902
BstMAI	GTCTC	2 cut(s)	626, 833
BstMBI	GATC	4 cut(s)	104, 158, 480, 899
BstMWI	GCNNNNNNNGC	3 cut(s)	398, 681, 950
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	19, 376
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	2 cut(s)	104, 158
BstXI	CCANNNNNNTGG	1 cut(s)	47
BstYI	RGATCY	2 cut(s)	104, 158
BsuI	GTATCC	1 cut(s)	356
BsuRI	GGCC	5 cut(s)	217, 248, 255, 441, 779
BtgI	CCRYGG	1 cut(s)	353
BtgZI	GCGATG	1 cut(s)	690
BtsCI	GGATG	2 cut(s)	98, 102
BtsI	GCAGTG	1 cut(s)	332
BtsIMutI	CAGTG	4 cut(s)	126, 332, 684, 773
Cac8I	GCNNGC	2 cut(s)	219, 399
CfoI	GCGC	1 cut(s)	205
Cfr10I	RCCGGY	3 cut(s)	251, 448, 518
Cfr13I	GGNCC	3 cut(s)	215, 246, 439
Csp6I	GTAC	3 cut(s)	297, 493, 508
CspAI	ACCGGT	1 cut(s)	518
CspCI	CAANNNNNGTGG	2 cut(s)	224, 259
CviAII	CATG	5 cut(s)	11, 354, 537, 582, 844
CviQI	GTAC	3 cut(s)	297, 493, 508
DdeI	CTNAG	4 cut(s)	272, 367, 512, 599
DpnI	GATC	4 cut(s)	106, 160, 482, 901
DpnII	GATC	4 cut(s)	104, 158, 480, 899
DraIII	CACNNNGTG	1 cut(s)	972
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	965
EarI	CTCTTC	1 cut(s)	965
Eco130I	CCWWGG	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	833
Eco57I	CTGAAG	2 cut(s)	708, 717
Eco88I	CYCGRG	2 cut(s)	314, 374
EcoRI	GAATTC	1 cut(s)	915
EcoT14I	CCWWGG	1 cut(s)	353
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	5 cut(s)	14, 357, 540, 585, 847
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	5 cut(s)	10, 353, 536, 581, 843
FblI	GTMKAC	1 cut(s)	926
Fnu4HI	GCNGC	2 cut(s)	33, 390
FokI	GGATG	2 cut(s)	105, 109
Fsp4HI	GCNGC	2 cut(s)	33, 390
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	204
GluI	GCNGC	2 cut(s)	33, 390
HaeIII	GGCC	5 cut(s)	217, 248, 255, 441, 779
HapII	CCGG	5 cut(s)	76, 252, 449, 519, 702
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	5 cut(s)	14, 357, 540, 585, 847
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	2 cut(s)	198, 824
HpaII	CCGG	5 cut(s)	76, 252, 449, 519, 702
HphI	GGTGA	2 cut(s)	406, 703
Hpy166II	GTNNAC	2 cut(s)	495, 927
Hpy188I	TCNGA	4 cut(s)	480, 505, 533, 631
Hpy188III	TCNNGA	3 cut(s)	6, 374, 903
Hpy8I	GTNNAC	2 cut(s)	495, 927
HpyAV	CCTTC	3 cut(s)	359, 430, 674
HpyCH4III	ACNGT	2 cut(s)	112, 637
HpyCH4V	TGCA	8 cut(s)	35, 173, 308, 581, 763, 849, 953, 975
HpyF10VI	GCNNNNNNNGC	3 cut(s)	398, 681, 950
HpyF3I	CTNAG	4 cut(s)	272, 367, 512, 599
Hsp92II	CATG	5 cut(s)	14, 357, 540, 585, 847
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	4 cut(s)	104, 158, 480, 899
Lsp1109I	GCAGC	2 cut(s)	19, 376
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	43, 646
MalI	GATC	4 cut(s)	106, 160, 482, 901
MboI	GATC	4 cut(s)	104, 158, 480, 899
MboII	GAAGA	5 cut(s)	128, 573, 631, 701, 952
MflI	RGATCY	2 cut(s)	104, 158
MlsI	TGGCCA	1 cut(s)	779
MluCI	AATT	3 cut(s)	707, 764, 915
MluNI	TGGCCA	1 cut(s)	779
MmeI	TCCRAC	2 cut(s)	34, 134
MnlI	CCTC	8 cut(s)	22, 134, 278, 281, 323, 637, 750, 930
Mox20I	TGGCCA	1 cut(s)	779
MscI	TGGCCA	1 cut(s)	779
MseI	TTAA	2 cut(s)	767, 936
MslI	CAYNNNNRTG	1 cut(s)	749
Msp20I	TGGCCA	1 cut(s)	779
MspI	CCGG	5 cut(s)	76, 252, 449, 519, 702
MspR9I	CCNGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	203
MwoI	GCNNNNNNNGC	3 cut(s)	398, 681, 950
NciI	CCSGG	1 cut(s)	77
NcoI	CCATGG	1 cut(s)	353
NdeII	GATC	4 cut(s)	104, 158, 480, 899
NlaIII	CATG	5 cut(s)	14, 357, 540, 585, 847
NlaIV	GGNNCC	1 cut(s)	106
NspI	RCATGY	1 cut(s)	14
PaeR7I	CTCGAG	2 cut(s)	314, 374
PfeI	GAWTC	2 cut(s)	198, 824
PflMI	CCANNNNNTGG	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	518
PkrI	GCNGC	2 cut(s)	34, 391
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	3 cut(s)	215, 246, 439
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	104, 158
RsaI	GTAC	3 cut(s)	298, 494, 509
RsaNI	GTAC	3 cut(s)	297, 493, 508
RseI	CAYNNNNRTG	1 cut(s)	749
SaqAI	TTAA	2 cut(s)	767, 936
SatI	GCNGC	2 cut(s)	33, 390
Sau3AI	GATC	4 cut(s)	104, 158, 480, 899
Sau96I	GGNCC	3 cut(s)	215, 246, 439
ScrFI	CCNGG	1 cut(s)	77
SfcI	CTRYAG	1 cut(s)	403
Sfr274I	CTCGAG	2 cut(s)	314, 374
SlaI	CTCGAG	2 cut(s)	314, 374
SmiMI	CAYNNNNRTG	1 cut(s)	749
SmlI	CTYRAG	2 cut(s)	314, 374
SmoI	CTYRAG	2 cut(s)	314, 374
Sse9I	AATT	3 cut(s)	707, 764, 915
SsiI	CCGC	1 cut(s)	783
SspI	AATATT	1 cut(s)	980
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	2 cut(s)	112, 637
TaqI	TCGA	3 cut(s)	315, 375, 642
TasI	AATT	3 cut(s)	707, 764, 915
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	198, 824
Tru1I	TTAA	2 cut(s)	767, 936
Tru9I	TTAA	2 cut(s)	767, 936
TscAI	CASTG	4 cut(s)	133, 332, 691, 780
TseI	GCWGC	2 cut(s)	32, 389
TspDTI	ATGAA	3 cut(s)	489, 693, 724
TspRI	CASTG	4 cut(s)	133, 332, 691, 780
Van91I	CCANNNNNTGG	1 cut(s)	556
XapI	RAATTY	2 cut(s)	707, 915
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	787
XhoI	CTCGAG	2 cut(s)	314, 374
XmiI	GTMKAC	1 cut(s)	926
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.