Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

60321405 .. 60322103

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0471800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGGAGACCCATATAGTCCTCTTTGGAAAGCTCTATGGAAAGCTCAAGTCCCTAGTAAAGTGGCGATATTTGGATGGAGAGCTGTGCACAACCTCTTACCAACCAGAGCTGCTTTAACCTCCAAAGGTTATTCAGGCCCACTGCAGTGTGTGGTTTGTTCTAGAGATGTGGAAACCCTCAAACATCTGTTCTGTGAATGTAGTTTTGCCAGAGAGATCTTTGGAGCACCTCCTTTCTCTATTCCTATGACTACTCTAAGTTGGAAGGATTGGATCCTGGCTCGGGCTACTTCTTTAGAACCTACACTCTTTGGTCAAGTTTTGGTTCTTCTTTGGAGTATATGGAAGCACAGAAATAAAAAATTATGGAGAGAGAAAACTAACTGTTTGGACCCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

133

Amino Acids

15.23

Weight (kDa)

9.63

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	7 - 73	1.5e-18	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	268, 281
AfiI	CCNNNNNNNGG	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	276
AleI	CACNNNNGTG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	32, 44, 83, 110
AluI	AGCT	4 cut(s)	32, 44, 83, 110
Alw21I	GWGCWC	2 cut(s)	90, 229
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	268, 281
Ama87I	CYCGRG	1 cut(s)	282
AoxI	GGCC	1 cut(s)	136
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	2 cut(s)	137, 391
AvaI	CYCGRG	1 cut(s)	282
AvaII	GGWCC	1 cut(s)	391
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	90, 229
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	69
BciT130I	CCWGG	1 cut(s)	278
BfaI	CTAG	2 cut(s)	54, 162
BfmI	CTRYAG	1 cut(s)	143
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	1 cut(s)	391
BmeT110I	CYCGRG	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	137, 391
BmiI	GGNNCC	2 cut(s)	275, 393
BmrFI	CCNGG	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	90, 229
BsiHKCI	CYCGRG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	35
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	282
Bsp1286I	GDGCHC	2 cut(s)	90, 229
Bsp143I	GATC	2 cut(s)	216, 273
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	275, 393
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	2 cut(s)	268, 281
BssMI	GATC	2 cut(s)	216, 273
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	386
BstDEI	CTNAG	1 cut(s)	257
BstF5I	GGATG	1 cut(s)	80
BstKTI	GATC	2 cut(s)	219, 276
BstMBI	GATC	2 cut(s)	216, 273
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstSFI	CTRYAG	1 cut(s)	143
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	2 cut(s)	216, 273
BstYI	RGATCY	2 cut(s)	216, 273
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	80
BtsI	GCAGTG	2 cut(s)	140, 152
BtsIMutI	CAGTG	2 cut(s)	140, 152
Cfr13I	GGNCC	2 cut(s)	137, 391
CviJI	RGCY	7 cut(s)	32, 44, 83, 110, 138, 281, 287
CviKI_1	RGCY	7 cut(s)	32, 44, 83, 110, 138, 281, 287
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	218, 275
DpnII	GATC	2 cut(s)	216, 273
Eco47I	GGWCC	1 cut(s)	391
Eco88I	CYCGRG	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	276
FaiI	YATR	7 cut(s)	13, 15, 37, 248, 341, 343, 367
FaqI	GGGAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	54, 162
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	138
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	2 cut(s)	88, 145
HpyF3I	CTNAG	1 cut(s)	257
Kzo9I	GATC	2 cut(s)	216, 273
LmnI	GCTCC	1 cut(s)	224
LpnPI	CCDG	5 cut(s)	118, 120, 223, 263, 290
Lsp1109I	GCAGC	1 cut(s)	97
MaeI	CTAG	2 cut(s)	54, 162
MalI	GATC	2 cut(s)	218, 275
MboI	GATC	2 cut(s)	216, 273
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	2 cut(s)	216, 273
MhlI	GDGCHC	2 cut(s)	90, 229
MluCI	AATT	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	5 cut(s)	30, 104, 130, 188, 240
MseI	TTAA	1 cut(s)	116
MslI	CAYNNNNRTG	1 cut(s)	145
MspR9I	CCNGG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	278
NdeII	GATC	2 cut(s)	216, 273
NlaIV	GGNNCC	2 cut(s)	275, 393
OliI	CACNNNNGTG	1 cut(s)	145
PkrI	GCNGC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	275, 393
PspPI	GGNCC	2 cut(s)	137, 391
PstI	CTGCAG	1 cut(s)	147
PsuI	RGATCY	2 cut(s)	216, 273
RseI	CAYNNNNRTG	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	116
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	216, 273
Sau96I	GGNCC	2 cut(s)	137, 391
ScrFI	CCNGG	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	90, 229
SetI	ASST	9 cut(s)	34, 46, 85, 96, 112, 122, 130, 232, 304
SfcI	CTRYAG	1 cut(s)	143
SinI	GGWCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	145
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
Sse9I	AATT	1 cut(s)	362
SspMI	CTAG	2 cut(s)	54, 162
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	386
TasI	AATT	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	116
Tru9I	TTAA	1 cut(s)	116
TscAI	CASTG	2 cut(s)	147, 152
TseI	GCWGC	1 cut(s)	110
TspRI	CASTG	2 cut(s)	147, 152
VneI	GTGCAC	1 cut(s)	86
VpaK11BI	GGWCC	1 cut(s)	391
XbaI	TCTAGA	1 cut(s)	161
XspI	CTAG	2 cut(s)	54, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.