Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Reverse (-)

69474589 .. 69492799

Gene Structure 18211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG521000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTGAACACTGTCCTGTCTTTGCTGGCGGTTGATTACCCAGCTCACAAGCTAGCTTGCTACGTATCCGATGACGGGTGTTCCCCCCTCACCCTTTTTTCTCTCATTGAAGCCTCAAAGTTTGCTAGGATTTGGGTTCCCTTCTGTAAAAAGCATGGCATTCAAGTAAGGGCACCTTTCAGATACTTCTCTGCGGACGAGTTCACATTGCGAAGTGATAGTACACTGGAGTTGCTTCTAGAACGGACAAAAGTGAAGGATGAGTATGAAAATCTCTGCCAAAAGATTAAAGATGCAGACCACCATTCGGTACCCCTTGATATTTCTGAAGACTATGCAACTTTTGCCCACAAACAGACTAATAACCATCCTACAGTGATCAAGATAGAAGAACCGGCTCTCCTAATGTTTGCGGCTCTATATCTTGCTAACAACTTATACACTCTGTATTTTTACCTTGAATCTGGTCTATCAATCACTGCATGGTGGAATTATCAAAGAATGGGGCCACGAAACACTGTATTATCGACAACTTCTTTGCTATTTGGGACCATGAGTGTGGTACTCAAGCTTGTGGGGATTTCTGAGGTGGTATTTGAAGTCACACAAAAGGATGAATACTCCTCTAGTGATGATGATCATAATGCCAATGATGCTAATGCTGGCAAGATTAACAGAGTCTATGAGTTGTCTTTCTTTAATAAGGTTAGAGTATCTGTTATCCCTGAGTATCTCCTAGTTTTTGGCTGTGATTGTAGACATCTTGGAGATGACTTAGGTAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

262

Amino Acids

29.71

Weight (kDa)

5.35

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	2 - 129	1.6e-28	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	2 cut(s)	172, 310
AccI	GTMKAC	1 cut(s)	757
AciI	CCGC	3 cut(s)	29, 194, 413
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	3 cut(s)	223, 312, 564
AfiI	CCNNNNNNNGG	2 cut(s)	75, 307
AgsI	TTSAA	4 cut(s)	110, 164, 461, 599
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	4 cut(s)	44, 52, 56, 571
AluI	AGCT	4 cut(s)	44, 52, 56, 571
AoxI	GGCC	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	520, 552
Asp718I	GGTACC	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	506, 549
AsuHPI	GGTGA	2 cut(s)	16, 82
AsuNHI	GCTAGC	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	549
BaeGI	GKGCMC	1 cut(s)	175
BanI	GGYRCC	2 cut(s)	172, 310
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	1 cut(s)	375
BciVI	GTATCC	1 cut(s)	76
BclI	TGATCA	2 cut(s)	378, 637
BfaI	CTAG	5 cut(s)	53, 126, 239, 627, 737
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	76
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme18I	GGWCC	1 cut(s)	549
BmgT120I	GGNCC	2 cut(s)	506, 549
BmiI	GGNNCC	5 cut(s)	138, 174, 312, 507, 550
BmsI	GCATC	2 cut(s)	283, 643
BmtI	GCTAGC	1 cut(s)	56
BpiI	GAAGAC	1 cut(s)	336
BpmI	CTGGAG	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	551
BsaAI	YACGTR	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	636
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 307
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	636
BseGI	GGATG	3 cut(s)	265, 367, 619
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	2 cut(s)	75, 307
BseMI	GCAATG	1 cut(s)	206
BseMII	CTCAG	2 cut(s)	576, 717
BseNI	ACTGG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	613
BseSI	GKGCMC	1 cut(s)	175
BseYI	CCCAGC	1 cut(s)	40
BshFI	GGCC	1 cut(s)	508
BshNI	GGYRCC	2 cut(s)	172, 310
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	75, 307
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	378, 637
BspACI	CCGC	3 cut(s)	29, 194, 413
BspANI	GGCC	1 cut(s)	508
BspCNI	CTCAG	2 cut(s)	577, 718
BspLI	GGNNCC	5 cut(s)	138, 174, 312, 507, 550
BspOI	GCTAGC	1 cut(s)	56
BspT107I	GGYRCC	2 cut(s)	172, 310
BsrDI	GCAATG	1 cut(s)	206
BsrFI	RCCGGY	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	394
BssMI	GATC	2 cut(s)	378, 637
Bst4CI	ACNGT	3 cut(s)	13, 376, 520
BstAPI	GCANNNNNTGC	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	27, 54, 58, 664
BstDEI	CTNAG	3 cut(s)	585, 726, 775
BstF5I	GGATG	3 cut(s)	265, 367, 619
BstKTI	GATC	2 cut(s)	381, 640
BstMBI	GATC	2 cut(s)	378, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 653
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	175
BstSNI	TACGTA	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	336
BstXI	CCANNNNNNTGG	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	265, 367, 619
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	5 cut(s)	9, 224, 381, 477, 516
Cac8I	GCNNGC	4 cut(s)	27, 54, 58, 664
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	506, 549
Csp6I	GTAC	3 cut(s)	222, 311, 563
CviAII	CATG	3 cut(s)	155, 483, 553
CviJI	RGCY	9 cut(s)	44, 52, 56, 113, 398, 416, 508, 571, 747
CviKI_1	RGCY	9 cut(s)	44, 52, 56, 113, 398, 416, 508, 571, 747
CviQI	GTAC	3 cut(s)	222, 311, 563
DdeI	CTNAG	3 cut(s)	585, 726, 775
DpnI	GATC	2 cut(s)	380, 639
DpnII	GATC	2 cut(s)	378, 637
Eco105I	TACGTA	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	348
FaeI	CATG	3 cut(s)	158, 486, 556
FalI	AAGNNNNNCTT	2 cut(s)	160, 192
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	154, 482, 552
FbaI	TGATCA	2 cut(s)	378, 637
FblI	GTMKAC	1 cut(s)	757
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	3 cut(s)	272, 354, 626
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	5 cut(s)	53, 126, 239, 627, 737
GluI	GCNGC	1 cut(s)	414
GsaI	CCCAGC	1 cut(s)	44
GsuI	CTGGAG	1 cut(s)	248
HaeIII	GGCC	1 cut(s)	508
HapII	CCGG	1 cut(s)	395
Hin1II	CATG	3 cut(s)	158, 486, 556
HindIII	AAGCTT	1 cut(s)	569
HinfI	GANTC	2 cut(s)	461, 678
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	2 cut(s)	16, 82
Hpy166II	GTNNAC	4 cut(s)	7, 204, 224, 758
Hpy188I	TCNGA	4 cut(s)	70, 182, 328, 586
Hpy188III	TCNNGA	2 cut(s)	239, 382
Hpy8I	GTNNAC	4 cut(s)	7, 204, 224, 758
HpyAV	CCTTC	2 cut(s)	151, 250
HpyCH4III	ACNGT	3 cut(s)	13, 376, 520
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	3 cut(s)	296, 338, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 653
HpyF3I	CTNAG	3 cut(s)	585, 726, 775
HpySE526I	ACGT	1 cut(s)	63
Hsp92II	CATG	3 cut(s)	158, 486, 556
KpnI	GGTACC	1 cut(s)	314
Ksp22I	TGATCA	2 cut(s)	378, 637
Kzo9I	GATC	2 cut(s)	378, 637
LpnPI	CCDG	8 cut(s)	11, 29, 54, 212, 408, 450, 648, 738
LweI	GCATC	2 cut(s)	283, 643
MaeI	CTAG	5 cut(s)	53, 126, 239, 627, 737
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	2 cut(s)	380, 639
MboI	GATC	2 cut(s)	378, 637
MboII	GAAGA	2 cut(s)	341, 401
MhlI	GDGCHC	1 cut(s)	175
MluCI	AATT	2 cut(s)	490, 781
MlyI	GAGTC	1 cut(s)	687
MnlI	CCTC	4 cut(s)	98, 124, 580, 634
MseI	TTAA	3 cut(s)	288, 672, 699
MslI	CAYNNNNRTG	1 cut(s)	557
MspI	CCGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	344, 653
NdeII	GATC	2 cut(s)	378, 637
NheI	GCTAGC	1 cut(s)	52
NlaIII	CATG	3 cut(s)	158, 486, 556
NlaIV	GGNNCC	5 cut(s)	138, 174, 312, 507, 550
NmuCI	GTSAC	1 cut(s)	601
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	1 cut(s)	461
PkrI	GCNGC	1 cut(s)	415
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
Ppu21I	YACGTR	1 cut(s)	64
PspFI	CCCAGC	1 cut(s)	40
PspN4I	GGNNCC	5 cut(s)	138, 174, 312, 507, 550
PspPI	GGNCC	2 cut(s)	506, 549
RsaI	GTAC	3 cut(s)	223, 312, 564
RsaNI	GTAC	3 cut(s)	222, 311, 563
RseI	CAYNNNNRTG	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	288, 672, 699
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	2 cut(s)	378, 637
Sau96I	GGNCC	2 cut(s)	506, 549
SchI	GAGTC	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	175
SfaNI	GCATC	2 cut(s)	283, 643
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
SnaBI	TACGTA	1 cut(s)	64
Sse9I	AATT	2 cut(s)	490, 781
SsiI	CCGC	3 cut(s)	29, 194, 413
SspMI	CTAG	5 cut(s)	53, 126, 239, 627, 737
TaaI	ACNGT	3 cut(s)	13, 376, 520
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	490, 781
TatI	WGTACW	1 cut(s)	221
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	461
Tru1I	TTAA	3 cut(s)	288, 672, 699
Tru9I	TTAA	3 cut(s)	288, 672, 699
TscAI	CASTG	5 cut(s)	16, 231, 381, 484, 523
TseFI	GTSAC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	601
TspDTI	ATGAA	3 cut(s)	282, 630, 774
TspGWI	ACGGA	1 cut(s)	259
TspRI	CASTG	5 cut(s)	16, 231, 381, 484, 523
VpaK11BI	GGWCC	1 cut(s)	549
XbaI	TCTAGA	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	757
XspI	CTAG	5 cut(s)	53, 126, 239, 627, 737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.