Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

12664328 .. 12665942

Gene Structure 1615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00091020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCCAACTCAAACTCGCTTCCTCTCTATGAAAGGGTTGAGCACAGAAACACACTGCATAAAATCATGGAGTTTATAATCCTCTTCCTCCTCCTTTCACTCCTTGTTTATCGTCTCCTCTCTTTCAACAACCATGGTTTATCCTGGTCCATCGCATTCCTCTGCGAGCTCTGGTTTACCTTCAGTTGGGTCATCACCATGAGCAACAAATGGATTCTTGTTGACCATAAACCATACCCCAACCGCCTATTGCAACGGGTGCCTAAGGATGAGCTTCCAGCAGTAGACTTGTTTGTGACAACAGCAGACCCAGAGCTTGAACCACCTATCATTACCGTAAACACTGTTCTGTCTCTGTTGGCAGTTGATTACCCAACAAACAAACTAGCATGCTATGTTTCTGATGATGGGTGTTCCCCTATCACCTTCTACTCACTTGTGGAAGCATCAAAGTTTGCTACGATTTGGATTCCCTTTTGCAAAAAGTACAATGTTCAAGTTAGAGCTCCTTTTAGATACTTCACCAATAATTCCACGCTTTCTGGAAATAATAATAATAATAGCTCAATGGAGTTCAAGCATGAATGGAAGATAGTGAAGGATGAATATGAGCAACTTAGCAGCAAAATAGAGGATGCGGTGCGCAAATCAATCAATCCATCTGATATTATCGAATGCGACTTTTCAGTGTTTTCAAATGTACAGCGTAATGATCATCCAACAATAATCAAGGTGAATTATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

248

Amino Acids

28.77

Weight (kDa)

6.07

Isoelectric Point (pI)

32.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	95 - 245	4.3e-40	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
Acc16I	TGCGCA	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	2 cut(s)	244, 638
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	166
AfaI	GTAC	2 cut(s)	488, 702
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	5 cut(s)	127, 320, 497, 577, 696
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	5 cut(s)	169, 274, 316, 506, 564
AluI	AGCT	5 cut(s)	169, 274, 316, 506, 564
Alw21I	GWGCWC	3 cut(s)	45, 171, 508
Alw26I	GTCTC	2 cut(s)	119, 357
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	645
AspS9I	GGNCC	1 cut(s)	147
AsuHPI	GGTGA	4 cut(s)	187, 415, 514, 745
AvaII	GGWCC	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	259
BanII	GRGCYC	2 cut(s)	171, 508
Bbv12I	GWGCWC	3 cut(s)	45, 171, 508
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	3 cut(s)	158, 401, 667
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	119, 357
BfaI	CTAG	1 cut(s)	386
BisI	GCNGC	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	623
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	147
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	2 cut(s)	455, 625
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse21I	CCTNAGG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	4 cut(s)	274, 607, 640, 715
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseRI	GAGGAG	2 cut(s)	80, 107
BseXI	GCAGC	1 cut(s)	633
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	259
BsiHKAI	GWGCWC	3 cut(s)	45, 171, 508
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	2 cut(s)	119, 357
BsmBI	CGTCTC	1 cut(s)	119
BsmI	GAATGC	2 cut(s)	155, 680
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	3 cut(s)	45, 171, 508
Bsp1407I	TGTACA	1 cut(s)	700
Bsp143I	GATC	1 cut(s)	712
Bsp19I	CCATGG	1 cut(s)	133
BspACI	CCGC	2 cut(s)	244, 638
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	700
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	337, 346
Bst6I	CTCTTC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	259
BstAUI	TGTACA	1 cut(s)	700
BstC8I	GCNNGC	2 cut(s)	167, 391
BstDEI	CTNAG	2 cut(s)	264, 617
BstDSI	CCRYGG	1 cut(s)	133
BstF5I	GGATG	4 cut(s)	274, 607, 640, 715
BstHHI	GCGC	1 cut(s)	645
BstKTI	GATC	1 cut(s)	715
BstMAI	GTCTC	2 cut(s)	119, 357
BstMBI	GATC	1 cut(s)	712
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	633
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	133
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	274, 607, 640, 715
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	3 cut(s)	53, 342, 693
Cac8I	GCNNGC	2 cut(s)	167, 391
CfoI	GCGC	1 cut(s)	645
Cfr13I	GGNCC	1 cut(s)	147
Csp6I	GTAC	2 cut(s)	487, 701
CviAII	CATG	5 cut(s)	67, 134, 199, 390, 581
CviJI	RGCY	6 cut(s)	5, 169, 274, 316, 506, 564
CviKI_1	RGCY	6 cut(s)	5, 169, 274, 316, 506, 564
CviQI	GTAC	2 cut(s)	487, 701
DdeI	CTNAG	2 cut(s)	264, 617
DpnI	GATC	1 cut(s)	714
DpnII	GATC	1 cut(s)	712
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	2 cut(s)	169, 506
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	2 cut(s)	171, 508
Eco47I	GGWCC	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	169, 506
Eco57I	CTGAAG	1 cut(s)	166
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	2 cut(s)	169, 506
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	2 cut(s)	171, 508
ErhI	CCWWGG	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	5 cut(s)	70, 137, 202, 393, 584
FatI	CATG	5 cut(s)	66, 133, 198, 389, 580
FbaI	TGATCA	1 cut(s)	712
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	622
FokI	GGATG	4 cut(s)	281, 614, 647, 702
FriOI	GRGCYC	2 cut(s)	171, 508
Fsp4HI	GCNGC	1 cut(s)	622
FspBI	CTAG	1 cut(s)	386
FspI	TGCGCA	1 cut(s)	644
GlaI	GCGC	1 cut(s)	644
GluI	GCNGC	1 cut(s)	622
HaeIII	GGCC	1 cut(s)	5
HhaI	GCGC	1 cut(s)	645
Hin1II	CATG	5 cut(s)	70, 137, 202, 393, 584
Hin6I	GCGC	1 cut(s)	643
HinP1I	GCGC	1 cut(s)	643
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	2 cut(s)	214, 469
HphI	GGTGA	4 cut(s)	187, 415, 514, 745
Hpy166II	GTNNAC	4 cut(s)	177, 223, 286, 340
Hpy188I	TCNGA	2 cut(s)	403, 664
Hpy188III	TCNNGA	1 cut(s)	543
Hpy8I	GTNNAC	4 cut(s)	177, 223, 286, 340
HpyAV	CCTTC	3 cut(s)	190, 436, 592
HpyCH4III	ACNGT	2 cut(s)	337, 346
HpyCH4V	TGCA	3 cut(s)	58, 253, 480
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	2 cut(s)	264, 617
Hsp92II	CATG	5 cut(s)	70, 137, 202, 393, 584
HspAI	GCGC	1 cut(s)	643
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	1 cut(s)	712
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	6 cut(s)	130, 157, 157, 291, 324, 528
Lsp1109I	GCAGC	1 cut(s)	633
LweI	GCATC	2 cut(s)	455, 625
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	1 cut(s)	295
MalI	GATC	1 cut(s)	714
MboI	GATC	1 cut(s)	712
MboII	GAAGA	2 cut(s)	76, 601
MhlI	GDGCHC	3 cut(s)	45, 171, 508
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	529, 736
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	743
MnlI	CCTC	7 cut(s)	33, 92, 98, 101, 128, 170, 625
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	197
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	145
Mva1269I	GAATGC	2 cut(s)	155, 680
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	1 cut(s)	259
NcoI	CCATGG	1 cut(s)	133
NdeII	GATC	1 cut(s)	712
NlaIII	CATG	5 cut(s)	70, 137, 202, 393, 584
NlaIV	GGNNCC	1 cut(s)	261
NmuCI	GTSAC	1 cut(s)	295
NsbI	TGCGCA	1 cut(s)	644
NspI	RCATGY	1 cut(s)	393
PaeI	GCATGC	1 cut(s)	393
PctI	GAATGC	2 cut(s)	155, 680
PfeI	GAWTC	2 cut(s)	214, 469
PkrI	GCNGC	1 cut(s)	623
PsiI	TTATAA	1 cut(s)	77
Psp124BI	GAGCTC	2 cut(s)	171, 508
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	147
PsrI	GAACNNNNNNTAC	2 cut(s)	330, 362
RsaI	GTAC	2 cut(s)	488, 702
RsaNI	GTAC	2 cut(s)	487, 701
RseI	CAYNNNNRTG	1 cut(s)	197
SacI	GAGCTC	2 cut(s)	171, 508
SatI	GCNGC	1 cut(s)	622
Sau3AI	GATC	1 cut(s)	712
Sau96I	GGNCC	1 cut(s)	147
ScrFI	CCNGG	1 cut(s)	145
SduI	GDGCHC	3 cut(s)	45, 171, 508
SetI	ASST	9 cut(s)	171, 182, 276, 318, 328, 428, 508, 566, 735
SfaNI	GCATC	2 cut(s)	455, 625
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	197
SphI	GCATGC	1 cut(s)	393
Sse9I	AATT	2 cut(s)	529, 736
SsiI	CCGC	2 cut(s)	244, 638
SspMI	CTAG	1 cut(s)	386
SstI	GAGCTC	2 cut(s)	171, 508
StyD4I	CCNGG	1 cut(s)	143
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	337, 346
TaqI	TCGA	1 cut(s)	672
TasI	AATT	2 cut(s)	529, 736
TatI	WGTACW	2 cut(s)	486, 700
TfiI	GAWTC	2 cut(s)	214, 469
TscAI	CASTG	3 cut(s)	60, 349, 693
TseFI	GTSAC	1 cut(s)	295
TseI	GCWGC	1 cut(s)	621
Tsp45I	GTSAC	1 cut(s)	295
TspDTI	ATGAA	3 cut(s)	45, 597, 618
TspRI	CASTG	3 cut(s)	60, 349, 693
VpaK11BI	GGWCC	1 cut(s)	147
XceI	RCATGY	1 cut(s)	393
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.