Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003664.1

Orthogroup ID

OG0000454

Physical Location & Seq

Genomic Coordinates Forward (+)

13251 .. 13661

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003664.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgagtgcatggctttttggatttcttagtgtcatactcaaactcttgggcatatccgagacagtcttcgaggtaacacgaaaagaccaatctacatcaagcgatgaaggcactgaagatactgaagccggaaaattcacctttgaccagtccccagttttcatacctcccacagcaatgttgtttctgcaattaacagcactggccaccgctttgttggggcttcaaccaccagcccgtgatggggtggaatcaggctctttggagaccatgtgcagtgttttgttggtggtatgcttattaccatttttgaaaggtctgtttggatcaggaaaatatggaattcctctgtctaccatatttaagtctgctggtcttgcactactcttctacaccttgtgcagatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009832 GO:0009833 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030243 GO:0030244 GO:0032501 GO:0032502 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0051273 GO:0051274 GO:0051301 GO:0060560 GO:0061640 GO:0071554 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090627 GO:0099402 GO:1901576 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

136

Amino Acids

14.67

Weight (kDa)

4.79

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32530 AT2G32540 AT2G32620 AT2G32620 AT2G32620 AT2G32620 AT4G15290 AT4G15320 AT4G15320 AT4G15320 AT4G15320 AT4G15320
fragaria_vesca	FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42780 FvH4_6g42800 FvH4_6g42840 FvH4_6g42840
malus_domestica	MD09G1072200.v1.1 MD17G1099500.v1.1 MD17G1099600.v1.1 MD17G1099800.v1.1
prunus_persica	Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214200_v2.0.a1 Prupe.3G214400_v2.0.a1 Prupe.3G214400_v2.0.a1
pyrus_communis	pycom09g03400 pycom17g09490 pycom17g09510
rosa_chinensis	RchiOBHm_Chr2g0158721 RchiOBHm_Chr2g0158731 RchiOBHm_Chr2g0158741 RchiOBHm_Chr2g0158761 RchiOBHm_Chr2g0158771
rosa_laevigata	RLG00000021109 RLG00000021110 RLG00000021111
rosa_multiflora	Rmu_co8470225.1_g000001 Rmu_sc0003664.1_g000005 Rmu_sc0003664.1_g000006 Rmu_sc0003664.1_g000007 Rmu_sc0003664.1_g000012 Rmu_sc0004188.1_g000001 Rmu_sc0004188.1_g000006 Rmu_sc0004188.1_g000008 Rmu_sc0024429.1_g000001
rosa_roxburghii	Rroxscaffold_2G00091020 Rroxscaffold_2G00091030 Rroxscaffold_2G00091040 Rroxscaffold_2G00091050 Rroxscaffold_2G00091060 Rroxscaffold_2G00091080
rosa_rugosa	Rorug02G0471500 Rorug02G0471600 Rorug02G0471800 Rorug02G0471900 Rorug02G0471900 Rorug02G0472200 Rorug02G0472300 Rorug07G0260700
rosa_samantha	Rh1BG072200 Rh2AG537300 Rh2AG537400 Rh2AG537500 Rh2AG538000 Rh2AG538100 Rh2AG538200 Rh2BG550500 Rh2BG550600 Rh2BG550800 Rh2CG521000 Rh2CG521100 Rh2CG521200 Rh2CG521300 Rh2DG560200 Rh2DG560300 Rh2DG560400 Rh2DG560500 Rh2DG560600
rosa_wichuraiana	Rw2G044490 Rw2G044500 Rw2G044510 Rw2G044520 Rw2G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	353
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	134, 342
AcuI	CTGAAG	2 cut(s)	135, 144
AdeI	CACNNNGTG	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	243, 244
AgsI	TTSAA	2 cut(s)	227, 313
Alw26I	GTCTC	2 cut(s)	53, 260
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	134, 342
AsuHPI	GGTGA	1 cut(s)	130
BalI	TGGCCA	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	58
BccI	CCATC	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	53, 260
BmrI	ACTGGG	1 cut(s)	149
BmuI	ACTGGG	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	260
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	243, 244
Bse1I	ACTGG	3 cut(s)	148, 155, 207
Bse3DI	GCAATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	243, 244
BseMI	GCAATG	1 cut(s)	183
BseNI	ACTGG	3 cut(s)	148, 155, 207
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	2 cut(s)	243, 244
BsmAI	GTCTC	2 cut(s)	53, 260
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	206
BspPI	GGATC	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	3 cut(s)	148, 155, 207
BssMI	GATC	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	64
Bst6I	CTCTTC	1 cut(s)	392
BstDEI	CTNAG	1 cut(s)	26
BstKTI	GATC	1 cut(s)	329
BstMAI	GTCTC	2 cut(s)	53, 260
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 377
BstV2I	GAAGAC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	206
BtgZI	GCGATG	1 cut(s)	117
BtsI	GCAGTG	1 cut(s)	283
BtsIMutI	CAGTG	3 cut(s)	111, 200, 283
CviAII	CATG	2 cut(s)	9, 271
CviJI	RGCY	6 cut(s)	13, 128, 206, 223, 236, 258
CviKI_1	RGCY	6 cut(s)	13, 128, 206, 223, 236, 258
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
DraIII	CACNNNGTG	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	1 cut(s)	392
EarI	CTCTTC	1 cut(s)	392
Eco31I	GGTCTC	1 cut(s)	260
Eco57I	CTGAAG	2 cut(s)	135, 144
EcoRI	GAATTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	12, 274
FaiI	YATR	8 cut(s)	10, 35, 53, 164, 272, 295, 339, 359
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	2 cut(s)	8, 270
FblI	GTMKAC	1 cut(s)	353
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	12, 274
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	1 cut(s)	101
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	5 cut(s)	8, 190, 276, 380, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 377
HpyF3I	CTNAG	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	12, 274
Kzo9I	GATC	1 cut(s)	326
LpnPI	CCDG	8 cut(s)	142, 161, 168, 188, 240, 246, 315, 357
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	3 cut(s)	58, 128, 379
MlsI	TGGCCA	1 cut(s)	206
MluCI	AATT	3 cut(s)	134, 191, 342
MluNI	TGGCCA	1 cut(s)	206
MnlI	CCTC	3 cut(s)	64, 177, 357
Mox20I	TGGCCA	1 cut(s)	206
MscI	TGGCCA	1 cut(s)	206
MseI	TTAA	2 cut(s)	194, 363
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	206
MspI	CCGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	108, 377
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	12, 274
PfeI	GAWTC	1 cut(s)	251
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	194, 363
Sau3AI	GATC	1 cut(s)	326
SetI	ASST	5 cut(s)	75, 143, 169, 319, 398
SmiMI	CAYNNNNRTG	1 cut(s)	176
Sse9I	AATT	3 cut(s)	134, 191, 342
SsiI	CCGC	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	1 cut(s)	69
TasI	AATT	3 cut(s)	134, 191, 342
TfiI	GAWTC	1 cut(s)	251
Tru1I	TTAA	2 cut(s)	194, 363
Tru9I	TTAA	2 cut(s)	194, 363
TscAI	CASTG	3 cut(s)	118, 207, 283
TspDTI	ATGAA	2 cut(s)	120, 151
TspRI	CASTG	3 cut(s)	118, 207, 283
XapI	RAATTY	2 cut(s)	134, 342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.