Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

14389574 .. 14390907

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G158900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCCTTTCTTCTTGCCTTGGCATTTGTTGCTGCTGAAGCACAACAGATGCAGTCAAAATATAAGCCGAGGCTCTTCTTTAACACCAACCACCAACACCACATGGCTGACACGTTCTGGTCTATATGCCTTTGGATTTTACAGGCAAGGCAATGGCTATGCTGTTGGGATATTTCTTGCTGGAATTCCCCAAAAGACAGTCGTGTGGACTGCGAATCGAGATGATCCACCAGTCTCCAACAATGCCACCTTGCTGTTCACAGGTGACGGCCTTGCCTTGCCAACAGCAGAAGGCCAAAATTACTTGGTAAAATCTTCTGGCTCTTCTTCTTATGCTTCCATGCTCGATTCCGGTAATTTCGTGCTGTACAACTCTGGTCGGGAAATAGTATGGCAGAGCTTTCATCATCCAACCGACACCCTTTTGCCTGGTCAACGCCTTTTATCAGGAAACGAACTTTTCTCTGCGAATTCAGAAGCTGATCACTCAACGGGGATTTTCCGTCTCAAAATGCAAAATGATGGAAACCTTGTTCAGTACCCTGTAGCAGCGGCGGACACCAGTATTTATGCTTTTTATTCATCTCTCACTGTTGGCCAGGGAGAGAATGTGACACTTAATTTTGGTGCTGATGGCCATCTCTACTTGCTCAACAGGAATGGTACGAATATTCGGAATATAACAGATGGAGGTCTTCCTACTGATGAAGGAAAACTTTACATGATTCGAAAAAGAATGCAATTTGTTGAGTGGGAGTCTTCCAAGGATAAGTGTGTTCCTAAAGGCCTATGCGGATTGAATAGCTATTGTGTCTTAATTGATCTAGAGCCTGACTGTAGATGTCTTCCAAGATTCGAATCTGTCAACCAGGGAAATCAGACATCCGGGTGCGAGAGAAACTTTGTTGCGGATGCGTGCAAAAACAGGAATGAGAATTTCACTGACACCATGGAAGAGCTGGAAAGCACAACATGGGAAGATATTTCGTATATGAGTTTGAGATTATCCGACAAAGACGATTGCATACAAGGCTGTCTGGCGGATTGCGACTGTGAAGCTGTGTTTTTTGACGGTACAAACTGCAGAAAGAGGAGGCTTCCTTTGAGATTTGGTAGAAGAGACAAAGGAACTTCAGAGAGAGCTTTCATCAAGGTAGGTGTACCTACAAAACCAGACACGGATCCTAGAATTGTTCAACCAGGAAGCAAGAAAAAAGGTAGAACTGACATCCTCATTATTGGTCTTTCATTTACTGCTTTGATCCATTTTGTTGTTGATTTCCGGGATTGTGTTGTGGGCATATATAAGAATGAGCGATGTGAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

443

Amino Acids

49.36

Weight (kDa)

6.41

Isoelectric Point (pI)

31.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	551, 554, 792, 908, 1040
AclWI	GGATC	4 cut(s)	218, 1175, 1188, 1255
AcoI	YGGCCR	2 cut(s)	595, 634
AcsI	RAATTY	3 cut(s)	183, 469, 934
AcuI	CTGAAG	2 cut(s)	56, 1116
AfaI	GTAC	5 cut(s)	368, 539, 664, 1075, 1161
AflIII	ACRYGT	1 cut(s)	110
AgsI	TTSAA	2 cut(s)	799, 1196
AjnI	CCWGG	4 cut(s)	427, 597, 867, 1198
AloI	GAACNNNNNNTCC	2 cut(s)	516, 548
AluBI	AGCT	6 cut(s)	399, 479, 804, 958, 1058, 1142
AluI	AGCT	6 cut(s)	399, 479, 804, 958, 1058, 1142
Alw26I	GTCTC	3 cut(s)	238, 509, 1113
AlwI	GGATC	4 cut(s)	218, 1175, 1188, 1255
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	5 cut(s)	268, 292, 595, 634, 784
ApeKI	GCWGC	2 cut(s)	31, 548
ApoI	RAATTY	3 cut(s)	183, 469, 934
AsuC2I	CCSGG	2 cut(s)	886, 1283
AsuHPI	GGTGA	1 cut(s)	275
AsuII	TTCGAA	2 cut(s)	727, 855
BalI	TGGCCA	2 cut(s)	597, 636
BamHI	GGATCC	1 cut(s)	1180
BbsI	GAAGAC	3 cut(s)	686, 750, 836
BbvI	GCAGC	2 cut(s)	18, 560
BccI	CCATC	4 cut(s)	515, 626, 645, 680
BceAI	ACGGC	1 cut(s)	283
BciT130I	CCWGG	4 cut(s)	429, 599, 869, 1200
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	2 cut(s)	886, 1283
BcoDI	GTCTC	3 cut(s)	238, 509, 1113
BfaI	CTAG	2 cut(s)	824, 1185
BfmI	CTRYAG	3 cut(s)	543, 835, 1081
BisI	GCNGC	3 cut(s)	32, 549, 552
BlsI	GCNGC	3 cut(s)	33, 550, 553
Bme1390I	CCNGG	6 cut(s)	429, 599, 869, 886, 1200, 1283
BmiI	GGNNCC	1 cut(s)	1182
BmrFI	CCNGG	6 cut(s)	429, 599, 869, 886, 1200, 1283
BmsI	GCATC	2 cut(s)	38, 901
BpiI	GAAGAC	3 cut(s)	686, 750, 836
Bpu14I	TTCGAA	2 cut(s)	727, 855
BpuMI	CCSGG	2 cut(s)	886, 1283
BsaBI	GATNNNNATC	2 cut(s)	636, 856
BsaJI	CCNNGG	6 cut(s)	17, 67, 598, 762, 868, 948
BsaWI	WCCGGW	1 cut(s)	350
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bse1I	ACTGG	2 cut(s)	230, 561
Bse3DI	GCAATG	1 cut(s)	157
Bse8I	GATNNNNATC	2 cut(s)	636, 856
BseBI	CCWGG	4 cut(s)	429, 599, 869, 1200
BseDI	CCNNGG	6 cut(s)	17, 67, 598, 762, 868, 948
BseGI	GGATG	4 cut(s)	406, 881, 916, 1227
BseJI	GATNNNNATC	2 cut(s)	636, 856
BseMI	GCAATG	1 cut(s)	157
BseNI	ACTGG	2 cut(s)	230, 561
BseRI	GAGGAG	1 cut(s)	1105
BseXI	GCAGC	2 cut(s)	18, 560
BshFI	GGCC	5 cut(s)	270, 294, 597, 636, 786
BsiSI	CCGG	3 cut(s)	351, 885, 1282
BsmAI	GTCTC	3 cut(s)	238, 509, 1113
BsmBI	CGTCTC	1 cut(s)	509
BsmI	GAATGC	1 cut(s)	741
BsnI	GGCC	5 cut(s)	270, 294, 597, 636, 786
Bsp119I	TTCGAA	2 cut(s)	727, 855
Bsp1407I	TGTACA	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	223, 481, 820, 1180, 1260
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	5 cut(s)	551, 554, 792, 908, 1040
BspANI	GGCC	5 cut(s)	270, 294, 597, 636, 786
BspLI	GGNNCC	1 cut(s)	1182
BspMAI	CTGCAG	1 cut(s)	1085
BspPI	GGATC	4 cut(s)	218, 1175, 1188, 1255
BspQI	GCTCTTC	3 cut(s)	79, 328, 948
BspT104I	TTCGAA	2 cut(s)	727, 855
BsrDI	GCAATG	1 cut(s)	157
BsrGI	TGTACA	1 cut(s)	366
BsrI	ACTGG	2 cut(s)	230, 561
BssECI	CCNNGG	6 cut(s)	17, 67, 598, 762, 868, 948
BssMI	GATC	5 cut(s)	223, 481, 820, 1180, 1260
BssT1I	CCWWGG	3 cut(s)	17, 762, 948
Bst2UI	CCWGG	4 cut(s)	429, 599, 869, 1200
Bst4CI	ACNGT	5 cut(s)	199, 592, 836, 1052, 1073
Bst6I	CTCTTC	4 cut(s)	79, 328, 948, 1111
BstAPI	GCANNNNNTGC	1 cut(s)	28
BstAUI	TGTACA	1 cut(s)	366
BstBI	TTCGAA	2 cut(s)	727, 855
BstC8I	GCNNGC	1 cut(s)	916
BstDSI	CCRYGG	1 cut(s)	948
BstF5I	GGATG	4 cut(s)	406, 881, 916, 1227
BstKTI	GATC	5 cut(s)	226, 484, 823, 1183, 1263
BstMAI	GTCTC	3 cut(s)	238, 509, 1113
BstMBI	GATC	5 cut(s)	223, 481, 820, 1180, 1260
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 37, 1029
BstNI	CCWGG	4 cut(s)	429, 599, 869, 1200
BstSCI	CCNGG	6 cut(s)	427, 597, 867, 884, 1198, 1281
BstSFI	CTRYAG	3 cut(s)	543, 835, 1081
BstV1I	GCAGC	2 cut(s)	18, 560
BstV2I	GAAGAC	3 cut(s)	686, 750, 836
BstX2I	RGATCY	1 cut(s)	1180
BstYI	RGATCY	1 cut(s)	1180
BsuRI	GGCC	5 cut(s)	270, 294, 597, 636, 786
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	4 cut(s)	406, 881, 916, 1227
BtsIMutI	CAGTG	2 cut(s)	588, 939
Cac8I	GCNNGC	1 cut(s)	916
CaiI	CAGNNNCTG	1 cut(s)	479
Csp6I	GTAC	5 cut(s)	367, 538, 663, 1074, 1160
CviAII	CATG	5 cut(s)	102, 340, 721, 949, 972
CviQI	GTAC	5 cut(s)	367, 538, 663, 1074, 1160
DpnI	GATC	5 cut(s)	225, 483, 822, 1182, 1262
DpnII	GATC	5 cut(s)	223, 481, 820, 1180, 1260
EaeI	YGGCCR	2 cut(s)	595, 634
Eam1104I	CTCTTC	4 cut(s)	79, 328, 948, 1111
EarI	CTCTTC	4 cut(s)	79, 328, 948, 1111
EciI	GGCGGA	2 cut(s)	569, 1055
Eco130I	CCWWGG	3 cut(s)	17, 762, 948
Eco147I	AGGCCT	1 cut(s)	786
Eco57I	CTGAAG	2 cut(s)	56, 1116
EcoRI	GAATTC	2 cut(s)	183, 469
EcoRII	CCWGG	4 cut(s)	427, 597, 867, 1198
EcoT14I	CCWWGG	3 cut(s)	17, 762, 948
ErhI	CCWWGG	3 cut(s)	17, 762, 948
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	5 cut(s)	105, 343, 724, 952, 975
FalI	AAGNNNNNCTT	2 cut(s)	699, 731
FatI	CATG	5 cut(s)	101, 339, 720, 948, 971
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	3 cut(s)	32, 549, 552
FokI	GGATG	4 cut(s)	393, 868, 923, 1214
Fsp4HI	GCNGC	3 cut(s)	32, 549, 552
FspBI	CTAG	2 cut(s)	824, 1185
GluI	GCNGC	3 cut(s)	32, 549, 552
HaeIII	GGCC	5 cut(s)	270, 294, 597, 636, 786
HapII	CCGG	3 cut(s)	351, 885, 1282
Hin1II	CATG	5 cut(s)	105, 343, 724, 952, 975
HincII	GTYRAC	2 cut(s)	434, 865
HindII	GTYRAC	2 cut(s)	434, 865
HinfI	GANTC	6 cut(s)	214, 347, 724, 755, 852, 857
HpaII	CCGG	3 cut(s)	351, 885, 1282
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	5 cut(s)	207, 258, 434, 865, 1160
Hpy188I	TCNGA	5 cut(s)	475, 675, 879, 1009, 1135
Hpy188III	TCNNGA	4 cut(s)	218, 380, 447, 824
Hpy8I	GTNNAC	5 cut(s)	207, 258, 434, 865, 1160
HpyAV	CCTTC	2 cut(s)	284, 701
HpyCH4III	ACNGT	5 cut(s)	199, 592, 836, 1052, 1073
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	6 cut(s)	51, 514, 739, 918, 1023, 1083
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 37, 1029
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	5 cut(s)	105, 343, 724, 952, 975
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	223, 481, 820, 1180, 1260
LguI	GCTCTTC	3 cut(s)	79, 328, 948
Lsp1109I	GCAGC	2 cut(s)	18, 560
LweI	GCATC	2 cut(s)	38, 901
MaeI	CTAG	2 cut(s)	824, 1185
MaeII	ACGT	1 cut(s)	112
MaeIII	GTNAC	2 cut(s)	263, 610
MalI	GATC	5 cut(s)	225, 483, 822, 1182, 1262
MboI	GATC	5 cut(s)	223, 481, 820, 1180, 1260
MflI	RGATCY	1 cut(s)	1180
MlsI	TGGCCA	2 cut(s)	597, 636
MluCI	AATT	9 cut(s)	183, 298, 355, 469, 619, 740, 816, 934, 1188
MluNI	TGGCCA	2 cut(s)	597, 636
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	3 cut(s)	261, 434, 1032
MnlI	CCTC	5 cut(s)	62, 683, 1083, 1086, 1241
Mox20I	TGGCCA	2 cut(s)	597, 636
MscI	TGGCCA	2 cut(s)	597, 636
MseI	TTAA	3 cut(s)	80, 618, 815
MslI	CAYNNNNRTG	1 cut(s)	886
Msp20I	TGGCCA	2 cut(s)	597, 636
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	3 cut(s)	351, 885, 1282
MspR9I	CCNGG	6 cut(s)	429, 599, 869, 886, 1200, 1283
Mva1269I	GAATGC	1 cut(s)	741
MvaI	CCWGG	4 cut(s)	429, 599, 869, 1200
MwoI	GCNNNNNNNGC	3 cut(s)	28, 37, 1029
NciI	CCSGG	2 cut(s)	886, 1283
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	5 cut(s)	223, 481, 820, 1180, 1260
NlaIII	CATG	5 cut(s)	105, 343, 724, 952, 975
NlaIV	GGNNCC	1 cut(s)	1182
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	263, 610
NspV	TTCGAA	2 cut(s)	727, 855
PceI	AGGCCT	1 cut(s)	786
PciSI	GCTCTTC	3 cut(s)	79, 328, 948
PctI	GAATGC	1 cut(s)	741
PfeI	GAWTC	5 cut(s)	214, 347, 724, 852, 857
PfoI	TCCNGGA	1 cut(s)	1281
PkrI	GCNGC	3 cut(s)	33, 550, 553
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
Psp6I	CCWGG	4 cut(s)	427, 597, 867, 1198
PspGI	CCWGG	4 cut(s)	427, 597, 867, 1198
PspN4I	GGNNCC	1 cut(s)	1182
PstI	CTGCAG	1 cut(s)	1085
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	1180
RsaI	GTAC	5 cut(s)	368, 539, 664, 1075, 1161
RsaNI	GTAC	5 cut(s)	367, 538, 663, 1074, 1160
RseI	CAYNNNNRTG	1 cut(s)	886
SapI	GCTCTTC	3 cut(s)	79, 328, 948
SaqAI	TTAA	3 cut(s)	80, 618, 815
SatI	GCNGC	3 cut(s)	32, 549, 552
Sau3AI	GATC	5 cut(s)	223, 481, 820, 1180, 1260
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	6 cut(s)	429, 599, 869, 886, 1200, 1283
SfaNI	GCATC	2 cut(s)	38, 901
SfcI	CTRYAG	3 cut(s)	543, 835, 1081
SfuI	TTCGAA	2 cut(s)	727, 855
SmiMI	CAYNNNNRTG	1 cut(s)	886
Sse9I	AATT	9 cut(s)	183, 298, 355, 469, 619, 740, 816, 934, 1188
SseBI	AGGCCT	1 cut(s)	786
SsiI	CCGC	5 cut(s)	551, 554, 792, 908, 1040
SspI	AATATT	1 cut(s)	670
SspMI	CTAG	2 cut(s)	824, 1185
StuI	AGGCCT	1 cut(s)	786
StyD4I	CCNGG	6 cut(s)	427, 597, 867, 884, 1198, 1281
StyI	CCWWGG	3 cut(s)	17, 762, 948
TaaI	ACNGT	5 cut(s)	199, 592, 836, 1052, 1073
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	4 cut(s)	217, 345, 727, 855
TasI	AATT	9 cut(s)	183, 298, 355, 469, 619, 740, 816, 934, 1188
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	554
TfiI	GAWTC	5 cut(s)	214, 347, 724, 852, 857
Tru1I	TTAA	3 cut(s)	80, 618, 815
Tru9I	TTAA	3 cut(s)	80, 618, 815
TscAI	CASTG	2 cut(s)	595, 946
TseFI	GTSAC	2 cut(s)	263, 610
TseI	GCWGC	2 cut(s)	31, 548
Tsp45I	GTSAC	2 cut(s)	263, 610
TspDTI	ATGAA	5 cut(s)	392, 570, 720, 1135, 1236
TspGWI	ACGGA	2 cut(s)	491, 1193
TspRI	CASTG	2 cut(s)	595, 946
XapI	RAATTY	3 cut(s)	183, 469, 934
XbaI	TCTAGA	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	1 cut(s)	955
XspI	CTAG	2 cut(s)	824, 1185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.