Rroxscaffold_2G00124930

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
59494877 .. 59495680
804 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00124930.1

Sequence Viewer

Length: 804 bp
ATGTTGAGTAGCCAAAAGCTAGTTGCTGTGAAGAAACTAGAGAAAGTTGCAGCTGAAGGAGCAAAAGAATTCCAGACTGAGATGAAAGTTATTGGCAGAACTCATCACCGGAGTCTAGTACGTTTGCTTGGGTATTGCCTTGATGGCCCAAAGAAGCTTTTGGTGTATGAGTACATGAGCAATGGATCACTTGCAGATATACTTTTCACACCTGAGAGGAAACCTAATTGGGAAGAAAGAATGGAAATAGCTCGAAACATAGCACGGGGGTTTCTTTATCTGCATGAAGAGTGTGATACACAGATCATCCACTGTGACATAAAGCCTCAAAACATACTGATGGATGAGTACATGTGCCCCAAAATCTCTGACTTTGGTTTGGCAAAGTTGCTTCAGCAAGACCAGACTAGAACCACTACCGGCATTAGAGGGACTAAAGGGTATGTTGCGCCCGAGTGGCATAGGAAAATGACTATTACAGTTAAAGCAGATGTTTATAGCTTTGGAATTGTGTTGTTGGAGATTGTGTGCTGTCGAAGGAATGTGGACTGGAGTCTTCCTGAGGAGGAAGCTATCTTGGATGAATTGGTCTACCATTACTTTGAGAGTGGTGAACTCAGTAAATTGCTTGGGGATGAAGAGATAAACAGAAGGCAATTTGAAAGGGTGATTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCATTGCTTCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGATATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Protein Analysis

267

Amino Acids

30.77

Weight (kDa)

6.13

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 4 - 245 6.4e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 5 - 245 2.8e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 591
AclWI GGATC 1 cut(s) 193
AcsI RAATTY 1 cut(s) 68
AcuI CTGAAG 2 cut(s) 75, 377
AfaI GTAC 3 cut(s) 120, 173, 350
AflIII ACRYGT 1 cut(s) 351
AgsI TTSAA 1 cut(s) 662
AjnI CCWGG 1 cut(s) 693
AluBI AGCT 6 cut(s) 19, 53, 157, 251, 501, 572
AluI AGCT 6 cut(s) 19, 53, 157, 251, 501, 572
AlwI GGATC 1 cut(s) 193
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 68
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 3 cut(s) 98, 623, 679
AvaI CYCGRG 1 cut(s) 452
AxyI CCTNAGG 1 cut(s) 561
BaeGI GKGCMC 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 137, 334
BciT130I CCWGG 1 cut(s) 695
BfaI CTAG 4 cut(s) 20, 38, 116, 408
BfmI CTRYAG 1 cut(s) 753
BglI GCCNNNNNGGC 2 cut(s) 144, 457
BisI GCNGC 1 cut(s) 51
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 1 cut(s) 695
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 146
BmrFI CCNGG 1 cut(s) 695
BmsI GCATC 1 cut(s) 699
BoxI GACNNNNGTC 1 cut(s) 552
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 571
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 512, 542
Bse118I RCCGGY 1 cut(s) 419
Bse1I ACTGG 1 cut(s) 554
Bse21I CCTNAGG 1 cut(s) 561
Bse3DI GCAATG 2 cut(s) 187, 704
BseBI CCWGG 1 cut(s) 695
BseGI GGATG 6 cut(s) 306, 349, 586, 640, 690, 703
BseMI GCAATG 2 cut(s) 187, 704
BseMII CTCAG 4 cut(s) 69, 204, 552, 631
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 359
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 147
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 109, 420
BslFI GGGAC 3 cut(s) 445, 693, 763
BsmFI GGGAC 3 cut(s) 445, 693, 763
BsnI GGCC 1 cut(s) 147
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 359
Bsp143I GATC 2 cut(s) 185, 303
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 4 cut(s) 70, 205, 553, 630
BspPI GGATC 1 cut(s) 193
BsrDI GCAATG 2 cut(s) 187, 704
BsrFI RCCGGY 1 cut(s) 419
BsrI ACTGG 1 cut(s) 554
BssAI RCCGGY 1 cut(s) 419
BssMI GATC 2 cut(s) 185, 303
Bst2UI CCWGG 1 cut(s) 695
Bst4CI ACNGT 3 cut(s) 314, 481, 754
Bst6I CTCTTC 2 cut(s) 282, 633
BstDEI CTNAG 4 cut(s) 78, 213, 561, 617
BstF5I GGATG 6 cut(s) 306, 349, 586, 640, 690, 703
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 2 cut(s) 188, 306
BstMBI GATC 2 cut(s) 185, 303
BstMWI GCNNNNNNNGC 3 cut(s) 59, 144, 457
BstNI CCWGG 1 cut(s) 695
BstNSI RCATGY 1 cut(s) 355
BstPAI GACNNNNGTC 1 cut(s) 552
BstSCI CCNGG 1 cut(s) 693
BstSFI CTRYAG 1 cut(s) 753
BstSLI GKGCMC 1 cut(s) 359
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 548
Bsu36I CCTNAGG 1 cut(s) 561
BsuRI GGCC 1 cut(s) 147
BtsCI GGATG 6 cut(s) 306, 349, 586, 640, 690, 703
BtsIMutI CAGTG 1 cut(s) 310
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 119, 172, 349
CviAII CATG 3 cut(s) 175, 284, 352
CviQI GTAC 3 cut(s) 119, 172, 349
DdeI CTNAG 4 cut(s) 78, 213, 561, 617
DpnI GATC 2 cut(s) 187, 305
DpnII GATC 2 cut(s) 185, 303
Eam1104I CTCTTC 2 cut(s) 282, 633
EarI CTCTTC 2 cut(s) 282, 633
Eco32I GATATC 1 cut(s) 760
Eco57I CTGAAG 2 cut(s) 75, 377
Eco81I CCTNAGG 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 452
EcoRI GAATTC 1 cut(s) 68
EcoRII CCWGG 1 cut(s) 693
EcoRV GATATC 1 cut(s) 760
FaeI CATG 3 cut(s) 178, 287, 355
FalI AAGNNNNNCTT 2 cut(s) 666, 698
FaqI GGGAC 3 cut(s) 445, 693, 763
FatI CATG 3 cut(s) 174, 283, 351
FblI GTMKAC 1 cut(s) 591
Fnu4HI GCNGC 1 cut(s) 51
FokI GGATG 6 cut(s) 293, 356, 593, 647, 677, 710
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 4 cut(s) 20, 38, 116, 408
GlaI GCGC 1 cut(s) 450
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 571
HaeIII GGCC 1 cut(s) 147
HapII CCGG 2 cut(s) 109, 420
HhaI GCGC 1 cut(s) 451
Hin1II CATG 3 cut(s) 178, 287, 355
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 3 cut(s) 112, 553, 775
HpaII CCGG 2 cut(s) 109, 420
HphI GGTGA 3 cut(s) 98, 623, 679
Hpy166II GTNNAC 3 cut(s) 547, 592, 614
Hpy188I TCNGA 2 cut(s) 370, 774
Hpy188III TCNNGA 2 cut(s) 73, 560
Hpy8I GTNNAC 3 cut(s) 547, 592, 614
HpyAV CCTTC 6 cut(s) 50, 531, 645, 721, 726, 740
HpyCH4III ACNGT 3 cut(s) 314, 481, 754
HpyCH4IV ACGT 1 cut(s) 121
HpyCH4V TGCA 4 cut(s) 50, 194, 283, 690
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 144, 457
HpyF3I CTNAG 4 cut(s) 78, 213, 561, 617
HpySE526I ACGT 1 cut(s) 121
Hsp92II CATG 3 cut(s) 178, 287, 355
HspAI GCGC 1 cut(s) 449
Kzo9I GATC 2 cut(s) 185, 303
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 9 cut(s) 86, 122, 225, 416, 433, 535, 573, 680, 707
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 1 cut(s) 699
MaeI CTAG 4 cut(s) 20, 38, 116, 408
MaeII ACGT 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 314
MalI GATC 2 cut(s) 187, 305
MboI GATC 2 cut(s) 185, 303
MboII GAAGA 6 cut(s) 43, 245, 299, 548, 650, 736
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 6 cut(s) 68, 226, 507, 584, 623, 656
MlyI GAGTC 2 cut(s) 121, 562
MmeI TCCRAC 2 cut(s) 498, 723
MnlI CCTC 6 cut(s) 210, 336, 422, 556, 559, 780
MseI TTAA 2 cut(s) 483, 672
MslI CAYNNNNRTG 1 cut(s) 338
MspA1I CMGCKG 1 cut(s) 53
MspI CCGG 2 cut(s) 109, 420
MspR9I CCNGG 1 cut(s) 695
MvaI CCWGG 1 cut(s) 695
MwoI GCNNNNNNNGC 3 cut(s) 59, 144, 457
NdeII GATC 2 cut(s) 185, 303
NlaIII CATG 3 cut(s) 178, 287, 355
NmuCI GTSAC 1 cut(s) 314
NspI RCATGY 1 cut(s) 355
PciI ACATGT 1 cut(s) 351
PfeI GAWTC 1 cut(s) 775
PfoI TCCNGGA 1 cut(s) 693
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 2 cut(s) 120, 561
PpsI GAGTC 2 cut(s) 120, 561
PscI ACATGT 1 cut(s) 351
PshAI GACNNNNGTC 1 cut(s) 552
Psp6I CCWGG 1 cut(s) 693
PspGI CCWGG 1 cut(s) 693
PspPI GGNCC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 53
RsaI GTAC 3 cut(s) 120, 173, 350
RsaNI GTAC 3 cut(s) 119, 172, 349
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 2 cut(s) 483, 672
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 2 cut(s) 185, 303
Sau96I GGNCC 1 cut(s) 146
SchI GAGTC 2 cut(s) 121, 562
ScrFI CCNGG 1 cut(s) 695
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 1 cut(s) 699
SfcI CTRYAG 1 cut(s) 753
SmiMI CAYNNNNRTG 1 cut(s) 338
Sse9I AATT 6 cut(s) 68, 226, 507, 584, 623, 656
SspMI CTAG 4 cut(s) 20, 38, 116, 408
StyD4I CCNGG 1 cut(s) 693
TaaI ACNGT 3 cut(s) 314, 481, 754
TaiI ACGT 1 cut(s) 124
TaqI TCGA 2 cut(s) 253, 535
TasI AATT 6 cut(s) 68, 226, 507, 584, 623, 656
TatI WGTACW 2 cut(s) 171, 348
TfiI GAWTC 1 cut(s) 775
Tru1I TTAA 2 cut(s) 483, 672
Tru9I TTAA 2 cut(s) 483, 672
TscAI CASTG 1 cut(s) 317
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 5 cut(s) 98, 300, 597, 651, 737
TspRI CASTG 1 cut(s) 317
XapI RAATTY 1 cut(s) 68
XceI RCATGY 1 cut(s) 355
XmiI GTMKAC 1 cut(s) 591
XspI CTAG 4 cut(s) 20, 38, 116, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.