Rh2DG300100

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
35672255 .. 35674567
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG300100.1

Sequence Viewer

Length: 1578 bp
ATGGCTTTTCTTGTAGGCTGTCTTCTTGCCTTTGCAGTTATCCTGAATGCTGAAGCAAAAGCGGTGCCATCTAATATAAGCACTGACTCTTCTTTAACACCCACTTCCAACTCCTCGTGGTTGTCAAGCTCCGGTCTGTATGCCTTCGGCTTTTATAAGCAAGGCAATGGCTATGCTGTGGGGATAGTGCTTGCTGGAGTTCCTGAAAAGACTGTAGTCTGGACTGCAAACCGCAATGACCCCTTGGTCTCCAATAATGCCACCTTGCTCTTTACATCTAACGGGATTTCTTTGCAATCTACTCAAGGGGAAACACCAGTGGCGACCACTACTCAGTCTGCTTTCTCTGCTTCAATGCTTGACTCTGGTAACTTTGTACTATACAACTCCGATCAGGAAATAGTATGGCAAAGTTTTGACTATCCAACTGATACCATTTTGCCAAAACAGCGTTTGAAAGCAGGGGCAGAGCTGTACTCTGCTAAATCCAAAACTAATAGATCAAAAGGCATTTTCTGTCTCAGTATGCAGACTGATGGAAACCTTGTTCAGTACCCGGTAGCTACTCTAGATGCTTACTATGCATCTAACACACCAGGAAGTGGAGACAATGTGACACTAAACTTGGATGCTGATGGCCGTCTCTACTTACTCAACAACACTGGTTTCACTATACACAATATTACGAATGGATCTACTGATGAAGGCAAATCTTATCTTGTGAGACTTGATGTAGATGGAATTCTTCGCTTGTATTCATATAGTTTGAAGCAGAATGGCAACTGGTCAGTTGAGTGGTTATCTACAAGAGATAAGTGTGACCCTTTAGGTCTATGCGGATTTAATAGTTATTGTGTTTTAATGGATATGGAAGCTGAATGCAAATGCCTTCCAGGATTTGAGTTTATCACCTCGGGGGATCAGACTTCAGGCTGTGGGAGGAATATGATTGCAGATGTTTGTAAGTCAGAGAATGAAAACTTCACATACATCATGGAAGAACTGCCCGACACAAGATGGAATAATGTTGCATACATGACTTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCCGCACTTTTTGCAGATGGAAGCTGCAGAAAGCAGAGGCTTCCTTTGAGTCATGGAAGAAGAAGGTATGACACTTCAAACTCAGTTTTCATTAAGGTTGGTAAATCTAAACCTCCAGCTACAGATAATATCCATTCAAAGGGAAACAAGAAAGAAGGTGGAGTTGCAGTCCTTATTGTTGGGGTTTCATTTACTACTTTTGGGTCCATTTTGTTGGTGATCTCTGTAATTGTGTTTTGGAAACATAATGTTTGGGCTTATAAAAGGATGAATAAACTCAATGGTGATGTTGAATGGAATGAGGATGTGGCTCCGCGACCATATGCTTATGAACAACTAGAGAAGATGACTGATAATTTCAAGGAGGAGGATGAGCCATCGCTTCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGACATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Protein Analysis

525

Amino Acids

57.82

Weight (kDa)

5.1

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 154 5.2e-19 D-mannose binding lectin
S_locus_glycop PF00954 234 - 301 2e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 156, 1362
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 1 cut(s) 1530
AccII CGCG 1 cut(s) 1417
AciI CCGC 5 cut(s) 62, 232, 837, 1104, 1415
AclWI GGATC 2 cut(s) 700, 927
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 741
AcuI CTGAAG 2 cut(s) 72, 912
AfaI GTAC 3 cut(s) 378, 476, 554
AfiI CCNNNNNNNGG 2 cut(s) 602, 1240
AgsI TTSAA 7 cut(s) 354, 457, 769, 1179, 1239, 1394, 1462
AjnI CCWGG 2 cut(s) 595, 892
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 6 cut(s) 129, 472, 563, 875, 1125, 1220
AluI AGCT 6 cut(s) 129, 472, 563, 875, 1125, 1220
Alw26I GTCTC 5 cut(s) 253, 524, 600, 647, 718
AlwI GGATC 2 cut(s) 700, 927
Ama87I CYCGRG 1 cut(s) 913
AoxI GGCC 2 cut(s) 637, 1074
ApeKI GCWGC 1 cut(s) 1125
ApoI RAATTY 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 1305
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 901, 1330, 1397
AvaI CYCGRG 1 cut(s) 913
AvaII GGWCC 1 cut(s) 1305
BanI GGYRCC 1 cut(s) 64
BarI GAAGNNNNNNTAC 1 cut(s) 38
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 14
BbvI GCAGC 1 cut(s) 1112
BccI CCATC 7 cut(s) 76, 530, 629, 731, 1011, 1112, 1486
BceAI ACGGC 1 cut(s) 624
BciT130I CCWGG 2 cut(s) 597, 894
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 5 cut(s) 253, 524, 600, 647, 718
BfaI CTAG 2 cut(s) 569, 1439
BfmI CTRYAG 4 cut(s) 213, 1126, 1221, 1527
BisI GCNGC 2 cut(s) 1104, 1126
BlsI GCNGC 2 cut(s) 1105, 1127
Bme1390I CCNGG 3 cut(s) 557, 597, 894
Bme18I GGWCC 1 cut(s) 1305
BmeT110I CYCGRG 1 cut(s) 913
BmgT120I GGNCC 1 cut(s) 1305
BmiI GGNNCC 3 cut(s) 66, 1306, 1413
BmrFI CCNGG 3 cut(s) 557, 597, 894
BmsI GCATC 3 cut(s) 562, 593, 619
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 2 cut(s) 216, 1200
BpuEI CTTGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 557
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 2 cut(s) 243, 912
BsaWI WCCGGW 1 cut(s) 131
BsaXI ACNNNNNCTCC 4 cut(s) 597, 627, 1254, 1284
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 1240
Bse1I ACTGG 3 cut(s) 317, 667, 788
Bse3DI GCAATG 2 cut(s) 172, 241
BseBI CCWGG 2 cut(s) 597, 894
BseDI CCNNGG 2 cut(s) 243, 912
BseGI GGATG 5 cut(s) 634, 1374, 1411, 1477, 1533
BseLI CCNNNNNNNGG 2 cut(s) 602, 1240
BseMI GCAATG 2 cut(s) 172, 241
BseMII CTCAG 3 cut(s) 347, 535, 1197
BseNI ACTGG 3 cut(s) 317, 667, 788
BseRI GAGGAG 2 cut(s) 103, 1481
BseXI GCAGC 1 cut(s) 1112
Bsh1236I CGCG 1 cut(s) 1417
BshFI GGCC 2 cut(s) 639, 1076
BshNI GGYRCC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 913
BsiSI CCGG 2 cut(s) 132, 557
BslFI GGGAC 1 cut(s) 1537
BslI CCNNNNNNNGG 2 cut(s) 602, 1240
BsmAI GTCTC 5 cut(s) 253, 524, 600, 647, 718
BsmBI CGTCTC 1 cut(s) 647
BsmFI GGGAC 1 cut(s) 1537
BsmI GAATGC 3 cut(s) 52, 884, 1070
BsnI GGCC 2 cut(s) 639, 1076
Bso31I GGTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 913
Bsp143I GATC 5 cut(s) 391, 500, 692, 919, 1320
BspACI CCGC 5 cut(s) 62, 232, 837, 1104, 1415
BspANI GGCC 2 cut(s) 639, 1076
BspCNI CTCAG 3 cut(s) 346, 534, 1196
BspFNI CGCG 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 66, 1306, 1413
BspMAI CTGCAG 1 cut(s) 1130
BspPI GGATC 2 cut(s) 700, 927
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 172, 241
BsrI ACTGG 3 cut(s) 317, 667, 788
BssECI CCNNGG 2 cut(s) 243, 912
BssMI GATC 5 cut(s) 391, 500, 692, 919, 1320
BssSI CACGAG 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 243
Bst2BI CACGAG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 597, 894
Bst4CI ACNGT 3 cut(s) 214, 1097, 1528
Bst6I CTCTTC 1 cut(s) 94
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstC8I GCNNGC 2 cut(s) 192, 1078
BstDEI CTNAG 3 cut(s) 333, 521, 1183
BstF5I GGATG 5 cut(s) 634, 1374, 1411, 1477, 1533
BstFNI CGCG 1 cut(s) 1417
BstKTI GATC 5 cut(s) 394, 503, 695, 922, 1323
BstMAI GTCTC 5 cut(s) 253, 524, 600, 647, 718
BstMBI GATC 5 cut(s) 391, 500, 692, 919, 1320
BstMWI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
BstNI CCWGG 2 cut(s) 597, 894
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 3 cut(s) 555, 595, 892
BstSFI CTRYAG 4 cut(s) 213, 1126, 1221, 1527
BstUI CGCG 1 cut(s) 1417
BstV1I GCAGC 1 cut(s) 1112
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 692
BstXI CCANNNNNNTGG 1 cut(s) 1315
BstYI RGATCY 1 cut(s) 692
BsuRI GGCC 2 cut(s) 639, 1076
BtgZI GCGATG 1 cut(s) 1464
BtsCI GGATG 5 cut(s) 634, 1374, 1411, 1477, 1533
BtsIMutI CAGTG 3 cut(s) 81, 324, 660
Cac8I GCNNGC 2 cut(s) 192, 1078
Cfr13I GGNCC 1 cut(s) 1305
Csp6I GTAC 3 cut(s) 377, 475, 553
CviAII CATG 3 cut(s) 994, 1036, 1154
CviQI GTAC 3 cut(s) 377, 475, 553
DdeI CTNAG 3 cut(s) 333, 521, 1183
DpnI GATC 5 cut(s) 393, 502, 694, 921, 1322
DpnII GATC 5 cut(s) 391, 500, 692, 919, 1320
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 243
Eco147I AGGCCT 1 cut(s) 1076
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 1305
Eco57I CTGAAG 2 cut(s) 72, 912
Eco88I CYCGRG 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 2 cut(s) 595, 892
EcoT14I CCWWGG 1 cut(s) 243
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 3 cut(s) 997, 1039, 1157
FalI AAGNNNNNCTT 4 cut(s) 1064, 1096, 1092, 1124
FaqI GGGAC 1 cut(s) 1537
FatI CATG 3 cut(s) 993, 1035, 1153
FauNDI CATATG 1 cut(s) 1423
FblI GTMKAC 1 cut(s) 1530
Fnu4HI GCNGC 2 cut(s) 1104, 1126
FokI GGATG 5 cut(s) 641, 1381, 1418, 1484, 1520
Fsp4HI GCNGC 2 cut(s) 1104, 1126
FspBI CTAG 2 cut(s) 569, 1439
GluI GCNGC 2 cut(s) 1104, 1126
GsuI CTGGAG 2 cut(s) 216, 1200
HaeIII GGCC 2 cut(s) 639, 1076
HapII CCGG 2 cut(s) 132, 557
Hin1II CATG 3 cut(s) 997, 1039, 1157
HinfI GANTC 4 cut(s) 86, 362, 1150, 1549
HpaII CCGG 2 cut(s) 132, 557
HphI GGTGA 3 cut(s) 901, 1330, 1397
Hpy166II GTNNAC 1 cut(s) 1531
Hpy188I TCNGA 5 cut(s) 391, 924, 970, 1054, 1548
Hpy188III TCNNGA 5 cut(s) 43, 203, 220, 395, 569
Hpy8I GTNNAC 1 cut(s) 1531
HpyAV CCTTC 8 cut(s) 154, 698, 899, 1158, 1250, 1495, 1500, 1514
HpyCH4III ACNGT 3 cut(s) 214, 1097, 1528
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
HpyF3I CTNAG 3 cut(s) 333, 521, 1183
Hsp92II CATG 3 cut(s) 997, 1039, 1157
Kzo9I GATC 5 cut(s) 391, 500, 692, 919, 1320
LmnI GCTCC 2 cut(s) 134, 1417
Lsp1109I GCAGC 1 cut(s) 1112
LweI GCATC 3 cut(s) 562, 593, 619
MaeI CTAG 2 cut(s) 569, 1439
MaeIII GTNAC 3 cut(s) 368, 613, 818
MalI GATC 5 cut(s) 393, 502, 694, 921, 1322
MboI GATC 5 cut(s) 391, 500, 692, 919, 1320
MboII GAAGA 9 cut(s) 14, 81, 737, 1010, 1073, 1170, 1173, 1456, 1510
MflI RGATCY 1 cut(s) 692
MluCI AATT 3 cut(s) 741, 1329, 1456
MlyI GAGTC 3 cut(s) 80, 356, 1159
MmeI TCCRAC 3 cut(s) 132, 449, 1497
Mph1103I ATGCAT 1 cut(s) 586
MseI TTAA 4 cut(s) 95, 843, 860, 1194
MspI CCGG 2 cut(s) 132, 557
MspR9I CCNGG 3 cut(s) 557, 597, 894
Mva1269I GAATGC 3 cut(s) 52, 884, 1070
MvaI CCWGG 2 cut(s) 597, 894
MvnI CGCG 1 cut(s) 1417
MwoI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
NciI CCSGG 1 cut(s) 557
NdeI CATATG 1 cut(s) 1423
NdeII GATC 5 cut(s) 391, 500, 692, 919, 1320
NlaIII CATG 3 cut(s) 997, 1039, 1157
NlaIV GGNNCC 3 cut(s) 66, 1306, 1413
NmuCI GTSAC 2 cut(s) 613, 818
NsiI ATGCAT 1 cut(s) 586
PceI AGGCCT 1 cut(s) 1076
PctI GAATGC 3 cut(s) 52, 884, 1070
PfeI GAWTC 1 cut(s) 1549
PflFI GACNNNGTC 1 cut(s) 1042
PflMI CCANNNNNTGG 1 cut(s) 602
PfoI TCCNGGA 1 cut(s) 892
PkrI GCNGC 2 cut(s) 1105, 1127
PleI GAGTC 3 cut(s) 80, 356, 1158
PpsI GAGTC 3 cut(s) 80, 356, 1158
PshAI GACNNNNGTC 1 cut(s) 215
PsiI TTATAA 2 cut(s) 156, 1362
Psp6I CCWGG 2 cut(s) 595, 892
PspGI CCWGG 2 cut(s) 595, 892
PspN4I GGNNCC 3 cut(s) 66, 1306, 1413
PspPI GGNCC 1 cut(s) 1305
PstI CTGCAG 1 cut(s) 1130
PsuI RGATCY 1 cut(s) 692
PsyI GACNNNGTC 1 cut(s) 1042
RsaI GTAC 3 cut(s) 378, 476, 554
RsaNI GTAC 3 cut(s) 377, 475, 553
SaqAI TTAA 4 cut(s) 95, 843, 860, 1194
SatI GCNGC 2 cut(s) 1104, 1126
Sau3AI GATC 5 cut(s) 391, 500, 692, 919, 1320
Sau96I GGNCC 1 cut(s) 1305
SchI GAGTC 3 cut(s) 80, 356, 1159
ScrFI CCNGG 3 cut(s) 557, 597, 894
SfaNI GCATC 3 cut(s) 562, 593, 619
SfcI CTRYAG 4 cut(s) 213, 1126, 1221, 1527
SinI GGWCC 1 cut(s) 1305
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 3 cut(s) 741, 1329, 1456
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 5 cut(s) 62, 232, 837, 1104, 1415
SspI AATATT 1 cut(s) 682
SspMI CTAG 2 cut(s) 569, 1439
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 3 cut(s) 555, 595, 892
StyI CCWWGG 1 cut(s) 243
TaaI ACNGT 3 cut(s) 214, 1097, 1528
TasI AATT 3 cut(s) 741, 1329, 1456
TatI WGTACW 2 cut(s) 376, 474
TauI GCSGC 1 cut(s) 1106
TfiI GAWTC 1 cut(s) 1549
Tru1I TTAA 4 cut(s) 95, 843, 860, 1194
Tru9I TTAA 4 cut(s) 95, 843, 860, 1194
TscAI CASTG 3 cut(s) 88, 324, 667
TseFI GTSAC 2 cut(s) 613, 818
TseI GCWGC 1 cut(s) 1125
Tsp45I GTSAC 2 cut(s) 613, 818
TspDTI ATGAA 8 cut(s) 717, 747, 990, 1180, 1278, 1385, 1446, 1511
TspRI CASTG 3 cut(s) 88, 324, 667
Tth111I GACNNNGTC 1 cut(s) 1042
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 1305
XapI RAATTY 1 cut(s) 741
XbaI TCTAGA 1 cut(s) 568
XmiI GTMKAC 1 cut(s) 1530
XspI CTAG 2 cut(s) 569, 1439
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.