Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Forward (+)

35767507 .. 35777031

Gene Structure 9525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG300600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAATATCACCAATGGAGGTCTTCCCATTCGAGGAAAATCTCATCTTGTGAGAATTGATGCAGATGGGATTCTTCGTCTGTATTCATATGATCTGAAACAGAAAGGAAATTGGTCTATTATATGGGAATCTTCCACAAATAGATGTGACCCTAAAGGTATATGCGGAGTTAATAGTTACTGTGTCACAATGGGGGCAGCAATTGATTGTAAATGTCTTCCTGGATTCGAATCTGTCAACCCGGGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCGTTGGAGATGTTTGCAGATCGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGCAGCACAGCATGGTATGATGAGCCATATGTGGTTCTGCCATCTTCAGGTAAAGAAGATTGCAAACAAGCCTGTTTGGAGGACTTGAACTGTCTGGCTGCAGTTTTTAACGGTTCAAGATGCAGAAAGCAGAGGCTTCCTTTGAGGTATGGAAGAAGAGAGGAGGATACTTCACACGTAATTTTCCTCAAGGAGGTTGTCATGTCTTCTGCAGCTCCAGCTCCAGATGCGGTTGTTCCAAAAGGAAGCAGGAAAAATGGTAGAATTGTTGTGCACCGTATGCATAAGGCAAAAGACTTTAACACAACTATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

217

Amino Acids

24.03

Weight (kDa)

8.81

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	17 - 78	7.9e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	165, 566
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	2 cut(s)	240, 366
AfiI	CCNNNNNNNGG	3 cut(s)	32, 383, 529
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	424, 453
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	2 cut(s)	551, 557
AluI	AGCT	2 cut(s)	551, 557
Alw21I	GWGCWC	1 cut(s)	612
Alw44I	GTGCAC	1 cut(s)	608
Ama87I	CYCGRG	1 cut(s)	241
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	4 cut(s)	197, 339, 434, 548
ApoI	RAATTY	1 cut(s)	271
Asp700I	GAANNNNTTC	1 cut(s)	274
AsuC2I	CCSGG	2 cut(s)	242, 243
AsuII	TTCGAA	1 cut(s)	228
AvaI	CYCGRG	1 cut(s)	241
BaeGI	GKGCMC	1 cut(s)	612
BbsI	GAAGAC	3 cut(s)	14, 209, 534
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	4 cut(s)	209, 351, 421, 560
BccI	CCATC	2 cut(s)	59, 385
BciT130I	CCWGG	1 cut(s)	222
BciVI	GTATCC	1 cut(s)	496
BcnI	CCSGG	2 cut(s)	242, 243
BfmI	CTRYAG	2 cut(s)	435, 546
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	4 cut(s)	198, 340, 435, 549
BlsI	GCNGC	4 cut(s)	199, 341, 436, 550
Bme1390I	CCNGG	3 cut(s)	222, 242, 243
BmeT110I	CYCGRG	1 cut(s)	241
BmrFI	CCNGG	3 cut(s)	222, 242, 243
BmrI	ACTGGG	1 cut(s)	344
BmsI	GCATC	3 cut(s)	49, 446, 553
BmuI	ACTGGG	1 cut(s)	344
BpiI	GAAGAC	3 cut(s)	14, 209, 534
BpmI	CTGGAG	2 cut(s)	537, 543
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	2 cut(s)	242, 243
BsaAI	YACGTR	1 cut(s)	514
BsaBI	GATNNNNATC	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 383, 529
Bse1I	ACTGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	1 cut(s)	241
BseJI	GATNNNNATC	1 cut(s)	229
BseLI	CCNNNNNNNGG	3 cut(s)	32, 383, 529
BseNI	ACTGG	1 cut(s)	339
BseRI	GAGGAG	1 cut(s)	512
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	4 cut(s)	209, 351, 421, 560
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	241
BsiSI	CCGG	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	32, 383, 529
BsoBI	CYCGRG	1 cut(s)	241
Bsp119I	TTCGAA	1 cut(s)	228
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	91, 296
BspACI	CCGC	2 cut(s)	165, 566
BspMAI	CTGCAG	2 cut(s)	439, 550
BspT104I	TTCGAA	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	2 cut(s)	91, 296
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	4 cut(s)	182, 428, 449, 614
Bst6I	CTCTTC	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	514
BstBI	TTCGAA	1 cut(s)	228
BstENI	CCTNNNNNAGG	1 cut(s)	527
BstKTI	GATC	2 cut(s)	94, 299
BstMBI	GATC	2 cut(s)	91, 296
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 563, 616
BstNI	CCWGG	1 cut(s)	222
BstSCI	CCNGG	3 cut(s)	220, 240, 241
BstSFI	CTRYAG	2 cut(s)	435, 546
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	4 cut(s)	209, 351, 421, 560
BstV2I	GAAGAC	3 cut(s)	14, 209, 534
BsuI	GTATCC	1 cut(s)	496
Cfr9I	CCCGGG	1 cut(s)	241
CviAII	CATG	3 cut(s)	325, 348, 538
CviJI	RGCY	6 cut(s)	361, 407, 434, 472, 551, 557
CviKI_1	RGCY	6 cut(s)	361, 407, 434, 472, 551, 557
DpnI	GATC	2 cut(s)	93, 298
DpnII	GATC	2 cut(s)	91, 296
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco57I	CTGAAG	2 cut(s)	240, 366
Eco88I	CYCGRG	1 cut(s)	241
EcoNI	CCTNNNNNAGG	1 cut(s)	527
EcoRII	CCWGG	1 cut(s)	220
EcoT22I	ATGCAT	1 cut(s)	621
FaeI	CATG	3 cut(s)	328, 351, 541
FatI	CATG	3 cut(s)	324, 347, 537
FauNDI	CATATG	2 cut(s)	88, 364
Fnu4HI	GCNGC	4 cut(s)	198, 340, 435, 549
Fsp4HI	GCNGC	4 cut(s)	198, 340, 435, 549
GluI	GCNGC	4 cut(s)	198, 340, 435, 549
GsuI	CTGGAG	2 cut(s)	537, 543
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	3 cut(s)	328, 351, 541
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	4 cut(s)	70, 128, 225, 230
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	2 cut(s)	238, 610
Hpy188I	TCNGA	2 cut(s)	96, 252
Hpy188III	TCNNGA	2 cut(s)	453, 560
Hpy8I	GTNNAC	2 cut(s)	238, 610
HpyCH4III	ACNGT	4 cut(s)	182, 428, 449, 614
HpyCH4IV	ACGT	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 563, 616
HpySE526I	ACGT	1 cut(s)	513
Hsp92II	CATG	3 cut(s)	328, 351, 541
Kzo9I	GATC	2 cut(s)	91, 296
LmnI	GCTCC	2 cut(s)	556, 562
Lsp1109I	GCAGC	4 cut(s)	209, 351, 421, 560
LweI	GCATC	3 cut(s)	49, 446, 553
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	3 cut(s)	146, 176, 184
MalI	GATC	2 cut(s)	93, 298
MboI	GATC	2 cut(s)	91, 296
MfeI	CAATTG	1 cut(s)	201
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	8 cut(s)	54, 109, 201, 271, 304, 310, 516, 600
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	9 cut(s)	11, 26, 409, 462, 474, 490, 493, 523, 533
Mph1103I	ATGCAT	1 cut(s)	621
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	3 cut(s)	171, 444, 636
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	222, 242, 243
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	554, 563, 616
NciI	CCSGG	2 cut(s)	242, 243
NdeI	CATATG	2 cut(s)	88, 364
NdeII	GATC	2 cut(s)	91, 296
NlaIII	CATG	3 cut(s)	328, 351, 541
NmuCI	GTSAC	2 cut(s)	146, 184
NsiI	ATGCAT	1 cut(s)	621
NspV	TTCGAA	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	4 cut(s)	70, 128, 225, 230
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	199, 341, 436, 550
Ppu21I	YACGTR	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PstI	CTGCAG	2 cut(s)	439, 550
SaqAI	TTAA	3 cut(s)	171, 444, 636
SatI	GCNGC	4 cut(s)	198, 340, 435, 549
Sau3AI	GATC	2 cut(s)	91, 296
ScrFI	CCNGG	3 cut(s)	222, 242, 243
SduI	GDGCHC	1 cut(s)	612
SetI	ASST	9 cut(s)	22, 160, 262, 388, 485, 516, 534, 553, 559
SfaNI	GCATC	3 cut(s)	49, 446, 553
SfcI	CTRYAG	2 cut(s)	435, 546
SfuI	TTCGAA	1 cut(s)	228
SmaI	CCCGGG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	8 cut(s)	54, 109, 201, 271, 304, 310, 516, 600
SsiI	CCGC	2 cut(s)	165, 566
StyD4I	CCNGG	3 cut(s)	220, 240, 241
TaaI	ACNGT	4 cut(s)	182, 428, 449, 614
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	31, 228, 299
TasI	AATT	8 cut(s)	54, 109, 201, 271, 304, 310, 516, 600
TfiI	GAWTC	4 cut(s)	70, 128, 225, 230
Tru1I	TTAA	3 cut(s)	171, 444, 636
Tru9I	TTAA	3 cut(s)	171, 444, 636
TseFI	GTSAC	2 cut(s)	146, 184
TseI	GCWGC	4 cut(s)	197, 339, 434, 548
Tsp45I	GTSAC	2 cut(s)	146, 184
TspDTI	ATGAA	2 cut(s)	17, 75
TspGWI	ACGGA	1 cut(s)	268
TspMI	CCCGGG	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	608
XagI	CCTNNNNNAGG	1 cut(s)	527
XapI	RAATTY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmaI	CCCGGG	1 cut(s)	241
XmnI	GAANNNNTTC	1 cut(s)	274
Zsp2I	ATGCAT	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.