Rh2DG299900

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
35655600 .. 35656244
645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG299900.1

Sequence Viewer

Length: 645 bp
ATGGCTTTTATAGTTTGTTATCTTCTTGCCTTTGCGTTCTTCAATTATGCTGAAGCACAACAACTGCAGTCTAATATAAGCAGGGGCTCTGCTTTAACACCCACCACCAACTCCTCATGGTTGTCCAGTTCCGGTATGTATGCCTTTGGCTTTTACAAGCAAGGCAATGGCTTTGCTATGGGGATAGTTGTTGCTGGAGTCCCCGAAAAGACTGTGGTGTGGACTGCAGATAGAGATGGTGGACTAGTCTCAAACAATGCCACCTTGTTCTTCACAAGTGATGGGATTGCCTTGCAGTTGACACAAGGCCGAAGTTTGGTGGTTGAGTCTCCAATGCCTATTTCTTCTGCTTCGATGCTTGATTCGGCTAATTTTGTGCTGTACAATGCGAGTCGGGCAATAGTATGGCAAAGCTTCTTGTACCCAACTGATACCTTGTTGCCCACTCAACCACTGCTAGCAGGGAAGAAACTTGTGTCTGCTAAATCAGAAACTGATCACTCATCAGGTATTTTCCGTCTCGTTATGCAACGTGATGGAAACCTTGTCCAGTACCCTGTTGACACTGGACTGGACCAGATGGTGGTGTTCAATATGCGTACTATGCATCTGGCACATATGGAGAAGGGTCAAATGTGTCACTAA

Protein Analysis

214

Amino Acids

23.39

Weight (kDa)

6.4

Isoelectric Point (pI)

39.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 155 3.1e-13 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 583
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 4 cut(s) 383, 422, 554, 601
AfiI CCNNNNNNNGG 2 cut(s) 316, 583
AgsI TTSAA 2 cut(s) 43, 592
AhlI ACTAGT 1 cut(s) 244
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 1 cut(s) 414
AluI AGCT 1 cut(s) 414
Alw26I GTCTC 3 cut(s) 253, 333, 524
AlwNI CAGNNNCTG 1 cut(s) 494
AoxI GGCC 1 cut(s) 307
AspS9I GGNCC 1 cut(s) 574
AsuNHI GCTAGC 1 cut(s) 457
AvaII GGWCC 1 cut(s) 574
BanII GRGCYC 1 cut(s) 89
BccI CCATC 4 cut(s) 230, 275, 530, 574
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 3 cut(s) 253, 333, 524
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 2 cut(s) 245, 458
BfmI CTRYAG 2 cut(s) 65, 225
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmsI GCATC 2 cut(s) 345, 616
BmtI GCTAGC 1 cut(s) 461
BpmI CTGGAG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 316, 583
Bse1I ACTGG 4 cut(s) 126, 550, 571, 576
Bse3DI GCAATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 316, 583
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 4 cut(s) 126, 550, 571, 576
BseRI GAGGAG 1 cut(s) 103
BshFI GGCC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 316, 583
BsmAI GTCTC 3 cut(s) 253, 333, 524
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 309
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 1 cut(s) 309
BspMAI CTGCAG 2 cut(s) 69, 229
BspOI GCTAGC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 4 cut(s) 126, 550, 571, 576
BssMI GATC 1 cut(s) 496
Bst4CI ACNGT 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 381
BstC8I GCNNGC 1 cut(s) 459
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 253, 333, 524
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 2 cut(s) 395, 604
BstSFI CTRYAG 2 cut(s) 65, 225
BsuRI GGCC 1 cut(s) 309
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 2 cut(s) 452, 564
Cac8I GCNNGC 1 cut(s) 459
CaiI CAGNNNCTG 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 574
Csp6I GTAC 4 cut(s) 382, 421, 553, 600
CviAII CATG 1 cut(s) 117
CviJI RGCY 7 cut(s) 5, 87, 150, 171, 309, 368, 414
CviKI_1 RGCY 7 cut(s) 5, 87, 150, 171, 309, 368, 414
CviQI GTAC 4 cut(s) 382, 421, 553, 600
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 1 cut(s) 574
Eco57I CTGAAG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 1 cut(s) 120
FaqI GGGAC 1 cut(s) 185
FatI CATG 1 cut(s) 116
FauNDI CATATG 1 cut(s) 618
FbaI TGATCA 1 cut(s) 496
FriOI GRGCYC 1 cut(s) 89
FspBI CTAG 2 cut(s) 245, 458
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 1 cut(s) 309
HapII CCGG 1 cut(s) 132
Hin1II CATG 1 cut(s) 120
HincII GTYRAC 2 cut(s) 300, 562
HindII GTYRAC 2 cut(s) 300, 562
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 4 cut(s) 198, 326, 362, 391
HpaII CCGG 1 cut(s) 132
Hpy166II GTNNAC 4 cut(s) 222, 242, 300, 562
Hpy188I TCNGA 1 cut(s) 490
Hpy8I GTNNAC 4 cut(s) 222, 242, 300, 562
HpyAV CCTTC 1 cut(s) 619
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 532
HpyCH4V TGCA 5 cut(s) 67, 227, 295, 529, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 604
HpySE526I ACGT 1 cut(s) 532
Hsp92II CATG 1 cut(s) 120
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 1 cut(s) 496
LweI GCATC 2 cut(s) 345, 616
MaeI CTAG 2 cut(s) 245, 458
MaeII ACGT 1 cut(s) 532
MaeIII GTNAC 1 cut(s) 638
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 5 cut(s) 14, 31, 262, 336, 478
MhlI GDGCHC 1 cut(s) 89
MluCI AATT 2 cut(s) 43, 370
MlyI GAGTC 3 cut(s) 207, 335, 400
MnlI CCTC 1 cut(s) 124
Mph1103I ATGCAT 1 cut(s) 609
MseI TTAA 1 cut(s) 95
MspI CCGG 1 cut(s) 132
MwoI GCNNNNNNNGC 2 cut(s) 395, 604
NdeI CATATG 1 cut(s) 618
NdeII GATC 1 cut(s) 496
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 609
PfeI GAWTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 583
PleI GAGTC 3 cut(s) 206, 334, 399
PpsI GAGTC 3 cut(s) 206, 334, 399
PspPI GGNCC 1 cut(s) 574
PstI CTGCAG 2 cut(s) 69, 229
PstNI CAGNNNCTG 1 cut(s) 494
RsaI GTAC 4 cut(s) 383, 422, 554, 601
RsaNI GTAC 4 cut(s) 382, 421, 553, 600
SaqAI TTAA 1 cut(s) 95
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 3 cut(s) 207, 335, 400
SduI GDGCHC 1 cut(s) 89
SetI ASST 6 cut(s) 266, 416, 437, 511, 535, 546
SfaNI GCATC 2 cut(s) 345, 616
SfcI CTRYAG 2 cut(s) 65, 225
SinI GGWCC 1 cut(s) 574
SpeI ACTAGT 1 cut(s) 244
Sse9I AATT 2 cut(s) 43, 370
SspMI CTAG 2 cut(s) 245, 458
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 535
TaqI TCGA 1 cut(s) 353
TasI AATT 2 cut(s) 43, 370
TatI WGTACW 1 cut(s) 381
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TscAI CASTG 2 cut(s) 459, 571
TseFI GTSAC 1 cut(s) 638
Tsp45I GTSAC 1 cut(s) 638
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 2 cut(s) 459, 571
Van91I CCANNNNNTGG 1 cut(s) 583
VpaK11BI GGWCC 1 cut(s) 574
XspI CTAG 2 cut(s) 245, 458
Zsp2I ATGCAT 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.