Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

32701534 .. 32714926

Gene Structure 13393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG274300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGAACGGCTCTGTCTTCTCCATGCGCACTCCGAATCATTTGATTCAATTTGACGAACGGCTCTTGTGTTCTGCATCAACATCAGTGAACAGATTCTCTGCTAGCTGCAAACAAGAATTGAAAGATCGGTATCCAGCATCTGCCCCAGCAACTGCTCCGTATGCTTACTATGCATCTCAAACAGACGGAAGTGGAGACAACGTGACACTGAACTTGGATGCTGATGGCCATCTCTACTTACTCAACAACACTGGTTTCAATATACTCAATATTACGAATAGAGGTATTCCTACTAATCAGGGCAAATCTTATCTCGTGAGACTTGATGTAGATGGAATTTTTCGCTTGTATTCATATAATTTGAAGCAGAATGGAAGCTGGTCAGTTGAGTGGAATTCTACAAGAGATAAGTGTGACCCCTTAGGTCTATGCGGATTTAATAGTTACTGTGTCACAAGAGATATGGAAGCTGAATGCAAATGCCTTCCGGGATTCGAGTCTGTCACCCCGGGGGATCAGGCTTTAGGCTGTGGGAGGAATATAGTTGCAGATATTTGCGAGTCAGAGAATGAAAACTTCACATACATCATGGAGGAACTGCCCAGCACAAGATGGGAAAATGTTGCATACATGACCTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCCGCACTTTTCGCAGATGGAAGCTGCAGAAAGCAGAGGCTTCCTTTGAATCTTGGAAGAAGAAAGTTAGATACTTCAAACTCAGCTTTCATCAAGGATGAGCCAATGCTTCGTCCTTCGATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGATATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

299

Amino Acids

33.33

Weight (kDa)

4.98

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	101 - 167	2.1e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	26
AciI	CCGC	2 cut(s)	432, 699
AclWI	GGATC	1 cut(s)	522
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	2 cut(s)	336, 394
AgsI	TTSAA	6 cut(s)	47, 121, 259, 364, 745, 774
AjnI	CCWGG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	105, 378, 470, 720, 782
AluI	AGCT	5 cut(s)	105, 378, 470, 720, 782
Alw26I	GTCTC	2 cut(s)	189, 313
AlwI	GGATC	1 cut(s)	522
AlwNI	CAGNNNCTG	2 cut(s)	140, 152
Ama87I	CYCGRG	1 cut(s)	508
AoxI	GGCC	2 cut(s)	226, 669
ApeKI	GCWGC	2 cut(s)	105, 720
ApoI	RAATTY	2 cut(s)	336, 394
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	1 cut(s)	27
AsuC2I	CCSGG	3 cut(s)	489, 509, 510
AsuHPI	GGTGA	1 cut(s)	496
AsuNHI	GCTAGC	1 cut(s)	101
AvaI	CYCGRG	1 cut(s)	508
AxyI	CCTNAGG	1 cut(s)	421
BalI	TGGCCA	1 cut(s)	228
BauI	CACGAG	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	92, 707
BccI	CCATC	5 cut(s)	218, 237, 326, 606, 707
BceAI	ACGGC	2 cut(s)	22, 74
BciT130I	CCWGG	1 cut(s)	637
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	3 cut(s)	489, 509, 510
BcoDI	GTCTC	2 cut(s)	189, 313
BfaI	CTAG	1 cut(s)	102
BfmI	CTRYAG	2 cut(s)	721, 849
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	3 cut(s)	106, 699, 721
BlsI	GCNGC	3 cut(s)	107, 700, 722
Bme1390I	CCNGG	4 cut(s)	489, 509, 510, 637
BmeT110I	CYCGRG	1 cut(s)	508
BmrFI	CCNGG	4 cut(s)	489, 509, 510, 637
BmsI	GCATC	4 cut(s)	83, 146, 182, 208
BmtI	GCTAGC	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	7
BpuMI	CCSGG	3 cut(s)	489, 509, 510
BsaBI	GATNNNNATC	2 cut(s)	129, 228
BsaJI	CCNNGG	3 cut(s)	507, 508, 509
BsaXI	ACNNNNNCTCC	2 cut(s)	186, 216
Bse1I	ACTGG	1 cut(s)	256
Bse21I	CCTNAGG	1 cut(s)	421
Bse8I	GATNNNNATC	2 cut(s)	129, 228
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	3 cut(s)	507, 508, 509
BseGI	GGATG	2 cut(s)	223, 799
BseJI	GATNNNNATC	2 cut(s)	129, 228
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	2 cut(s)	92, 707
BseYI	CCCAGC	2 cut(s)	145, 602
BshFI	GGCC	2 cut(s)	228, 671
BsiHKCI	CYCGRG	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	488, 509
BslFI	GGGAC	1 cut(s)	859
BsmAI	GTCTC	2 cut(s)	189, 313
BsmFI	GGGAC	1 cut(s)	859
BsmI	GAATGC	2 cut(s)	479, 665
BsnI	GGCC	2 cut(s)	228, 671
BsoBI	CYCGRG	1 cut(s)	508
Bsp143I	GATC	2 cut(s)	124, 514
BspACI	CCGC	2 cut(s)	432, 699
BspANI	GGCC	2 cut(s)	228, 671
BspCNI	CTCAG	1 cut(s)	791
BspMAI	CTGCAG	1 cut(s)	725
BspOI	GCTAGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	507, 508, 509
BssMI	GATC	2 cut(s)	124, 514
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	3 cut(s)	449, 692, 850
BstC8I	GCNNGC	2 cut(s)	103, 673
BstDEI	CTNAG	2 cut(s)	421, 778
BstF5I	GGATG	2 cut(s)	223, 799
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	2 cut(s)	127, 517
BstMAI	GTCTC	2 cut(s)	189, 313
BstMBI	GATC	2 cut(s)	124, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 170, 707
BstNI	CCWGG	1 cut(s)	637
BstSCI	CCNGG	4 cut(s)	487, 507, 508, 635
BstSFI	CTRYAG	2 cut(s)	721, 849
BstV1I	GCAGC	2 cut(s)	92, 707
BstV2I	GAAGAC	1 cut(s)	7
Bsu36I	CCTNAGG	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	228, 671
BtsCI	GGATG	2 cut(s)	223, 799
BtsIMutI	CAGTG	3 cut(s)	90, 206, 249
Cac8I	GCNNGC	2 cut(s)	103, 673
CaiI	CAGNNNCTG	2 cut(s)	140, 152
CfoI	GCGC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	508
CsiI	ACCWGGT	1 cut(s)	635
CviAII	CATG	3 cut(s)	22, 589, 631
DdeI	CTNAG	2 cut(s)	421, 778
DpnI	GATC	2 cut(s)	126, 516
DpnII	GATC	2 cut(s)	124, 514
EaeI	YGGCCR	1 cut(s)	226
Eco147I	AGGCCT	1 cut(s)	671
Eco32I	GATATC	1 cut(s)	856
Eco81I	CCTNAGG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	508
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	635
EcoRV	GATATC	1 cut(s)	856
EcoT22I	ATGCAT	1 cut(s)	175
FaeI	CATG	3 cut(s)	25, 592, 634
FalI	AAGNNNNNCTT	4 cut(s)	659, 691, 687, 719
FaqI	GGGAC	1 cut(s)	859
FatI	CATG	3 cut(s)	21, 588, 630
Fnu4HI	GCNGC	3 cut(s)	106, 699, 721
FokI	GGATG	2 cut(s)	230, 806
Fsp4HI	GCNGC	3 cut(s)	106, 699, 721
FspAI	RTGCGCAY	1 cut(s)	26
FspBI	CTAG	1 cut(s)	102
FspI	TGCGCA	1 cut(s)	26
GlaI	GCGC	1 cut(s)	26
GluI	GCNGC	3 cut(s)	106, 699, 721
GsaI	CCCAGC	2 cut(s)	149, 606
HaeIII	GGCC	2 cut(s)	228, 671
HapII	CCGG	2 cut(s)	488, 509
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	25, 592, 634
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	8 cut(s)	34, 43, 93, 492, 497, 560, 745, 871
HpaII	CCGG	2 cut(s)	488, 509
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	4 cut(s)	33, 565, 649, 870
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	88
HpyAV	CCTTC	4 cut(s)	494, 817, 822, 836
HpyCH4III	ACNGT	3 cut(s)	449, 692, 850
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	9 cut(s)	74, 108, 173, 477, 548, 626, 663, 687, 723
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 170, 707
HpyF3I	CTNAG	2 cut(s)	421, 778
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	25, 592, 634
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	124, 514
LmnI	GCTCC	1 cut(s)	160
Lsp1109I	GCAGC	2 cut(s)	92, 707
LweI	GCATC	4 cut(s)	83, 146, 182, 208
MabI	ACCWGGT	1 cut(s)	635
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	5 cut(s)	202, 413, 443, 451, 502
MalI	GATC	2 cut(s)	126, 516
MboI	GATC	2 cut(s)	124, 514
MboII	GAAGA	5 cut(s)	7, 668, 765, 768, 832
MlsI	TGGCCA	1 cut(s)	228
MluCI	AATT	5 cut(s)	47, 116, 336, 358, 394
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	2 cut(s)	506, 569
MmeI	TCCRAC	1 cut(s)	819
MnlI	CCTC	6 cut(s)	275, 528, 586, 673, 726, 876
Mox20I	TGGCCA	1 cut(s)	228
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	92
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	228
MspI	CCGG	2 cut(s)	488, 509
MspR9I	CCNGG	4 cut(s)	489, 509, 510, 637
Mva1269I	GAATGC	2 cut(s)	479, 665
MvaI	CCWGG	1 cut(s)	637
MwoI	GCNNNNNNNGC	3 cut(s)	161, 170, 707
NciI	CCSGG	3 cut(s)	489, 509, 510
NdeII	GATC	2 cut(s)	124, 514
NheI	GCTAGC	1 cut(s)	101
NlaIII	CATG	3 cut(s)	25, 592, 634
NmuCI	GTSAC	4 cut(s)	202, 413, 451, 502
NsbI	TGCGCA	1 cut(s)	26
NsiI	ATGCAT	1 cut(s)	175
PceI	AGGCCT	1 cut(s)	671
PctI	GAATGC	2 cut(s)	479, 665
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	6 cut(s)	34, 43, 93, 492, 745, 871
PflFI	GACNNNGTC	1 cut(s)	637
PfoI	TCCNGGA	1 cut(s)	487
PkrI	GCNGC	3 cut(s)	107, 700, 722
PleI	GAGTC	2 cut(s)	505, 568
PpsI	GAGTC	2 cut(s)	505, 568
Psp6I	CCWGG	1 cut(s)	635
PspFI	CCCAGC	2 cut(s)	145, 602
PspGI	CCWGG	1 cut(s)	635
PstI	CTGCAG	1 cut(s)	725
PstNI	CAGNNNCTG	2 cut(s)	140, 152
PsyI	GACNNNGTC	1 cut(s)	637
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	3 cut(s)	106, 699, 721
Sau3AI	GATC	2 cut(s)	124, 514
SchI	GAGTC	2 cut(s)	506, 569
ScrFI	CCNGG	4 cut(s)	489, 509, 510, 637
SexAI	ACCWGGT	1 cut(s)	635
SfaNI	GCATC	4 cut(s)	83, 146, 182, 208
SfcI	CTRYAG	2 cut(s)	721, 849
SmaI	CCCGGG	1 cut(s)	510
Sse9I	AATT	5 cut(s)	47, 116, 336, 358, 394
SseBI	AGGCCT	1 cut(s)	671
SsiI	CCGC	2 cut(s)	432, 699
SspI	AATATT	1 cut(s)	271
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	671
StyD4I	CCNGG	4 cut(s)	487, 507, 508, 635
TaaI	ACNGT	3 cut(s)	449, 692, 850
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	2 cut(s)	495, 815
TasI	AATT	5 cut(s)	47, 116, 336, 358, 394
TauI	GCSGC	1 cut(s)	701
TfiI	GAWTC	6 cut(s)	34, 43, 93, 492, 745, 871
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	3 cut(s)	90, 213, 256
TseFI	GTSAC	4 cut(s)	202, 413, 451, 502
TseI	GCWGC	2 cut(s)	105, 720
Tsp45I	GTSAC	4 cut(s)	202, 413, 451, 502
TspDTI	ATGAA	5 cut(s)	17, 342, 585, 775, 833
TspGWI	ACGGA	2 cut(s)	147, 201
TspMI	CCCGGG	1 cut(s)	508
TspRI	CASTG	3 cut(s)	90, 213, 256
Tth111I	GACNNNGTC	1 cut(s)	637
XapI	RAATTY	2 cut(s)	336, 394
XmaI	CCCGGG	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.