Rh2DG301300

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
35823340 .. 35823968
629 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG301300.1

Sequence Viewer

Length: 543 bp
ATGCTTGACTCGGGTAACTTTGTACTATACAGCTCCGATCAGGAAATAGTATGGCAAATTTTTGACTCTCCAACTGATACCCTTTTGCCAAAACAACGTTTGAGAGCAGGGTCACATCTTTACTCTGCTAAATCTGAAACTAATAGCTCAACTGGCATTTTCCGTCTCAGTATGCAAACTGATGGAAACCTTGTTCATTATCCAACATCTGCCCCAGCAACTGCTCTGTATGCTTACTATGCATCTCAAACAGACGGAAGTGGAGACAACGTGACACTAAACTTGGATGCTGATGGTCGTCTCTACTTACTCAACTACACTGGTTTCAATATACTCAATATTACGAATGGAGGTATTCCACGAATGGAGAATGGAAGCTGGTCAGTTGAGTGGAATTCTACAAGAGATCAGTGTGACCCTTTAGGTCTATGCGGATTTAATAGTTACTGTGTCACAAGAGATATGGAAGCTGAATGCAAATGCCTTCCAGGATTCGAGTCTATCACCCGGGGGATCAGACTTCAGGCTGTGGGAGGAATATAG

Protein Analysis

180

Amino Acids

19.79

Weight (kDa)

4.66

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 1 - 36 2.4e-08 D-mannose binding lectin
S_locus_glycop PF00954 123 - 167 6.8e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 432
AclI AACGTT 1 cut(s) 97
AclWI GGATC 1 cut(s) 521
AcsI RAATTY 2 cut(s) 57, 394
AcuI CTGAAG 1 cut(s) 506
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 1 cut(s) 328
AjnI CCWGG 1 cut(s) 487
AloI GAACNNNNNNTCC 2 cut(s) 177, 209
AluBI AGCT 4 cut(s) 33, 147, 378, 470
AluI AGCT 4 cut(s) 33, 147, 378, 470
Alw26I GTCTC 3 cut(s) 170, 258, 305
AlwI GGATC 1 cut(s) 521
AlwNI CAGNNNCTG 1 cut(s) 221
Ama87I CYCGRG 2 cut(s) 10, 507
ApoI RAATTY 2 cut(s) 57, 394
AsuC2I CCSGG 2 cut(s) 508, 509
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 2 cut(s) 10, 507
BccI CCATC 2 cut(s) 176, 287
BciT130I CCWGG 1 cut(s) 489
BcnI CCSGG 2 cut(s) 508, 509
BcoDI GTCTC 3 cut(s) 170, 258, 305
Bme1390I CCNGG 3 cut(s) 489, 508, 509
BmeT110I CYCGRG 2 cut(s) 10, 507
BmrFI CCNGG 3 cut(s) 489, 508, 509
BmsI GCATC 2 cut(s) 251, 277
BpuMI CCSGG 2 cut(s) 508, 509
BsaJI CCNNGG 2 cut(s) 507, 508
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bse1I ACTGG 2 cut(s) 157, 325
BseBI CCWGG 1 cut(s) 489
BseDI CCNNGG 2 cut(s) 507, 508
BseGI GGATG 1 cut(s) 292
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 2 cut(s) 157, 325
BseYI CCCAGC 1 cut(s) 214
BsiHKCI CYCGRG 2 cut(s) 10, 507
BsiSI CCGG 1 cut(s) 508
BsmAI GTCTC 3 cut(s) 170, 258, 305
BsmBI CGTCTC 2 cut(s) 170, 305
BsmI GAATGC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 10, 507
Bsp143I GATC 3 cut(s) 37, 406, 513
BspACI CCGC 1 cut(s) 432
BspCNI CTCAG 1 cut(s) 180
BspPI GGATC 1 cut(s) 521
BsrI ACTGG 2 cut(s) 157, 325
BssECI CCNNGG 2 cut(s) 507, 508
BssMI GATC 3 cut(s) 37, 406, 513
Bst2UI CCWGG 1 cut(s) 489
Bst4CI ACNGT 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 167
BstF5I GGATG 1 cut(s) 292
BstKTI GATC 3 cut(s) 40, 409, 516
BstMAI GTCTC 3 cut(s) 170, 258, 305
BstMBI GATC 3 cut(s) 37, 406, 513
BstMWI GCNNNNNNNGC 3 cut(s) 153, 230, 239
BstNI CCWGG 1 cut(s) 489
BstSCI CCNGG 3 cut(s) 487, 506, 507
BtsCI GGATG 1 cut(s) 292
BtsIMutI CAGTG 2 cut(s) 318, 416
CaiI CAGNNNCTG 1 cut(s) 221
Cfr9I CCCGGG 1 cut(s) 507
Csp6I GTAC 1 cut(s) 23
CviJI RGCY 5 cut(s) 33, 147, 378, 470, 527
CviKI_1 RGCY 5 cut(s) 33, 147, 378, 470, 527
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 167
DpnI GATC 3 cut(s) 39, 408, 515
DpnII GATC 3 cut(s) 37, 406, 513
Eco57I CTGAAG 1 cut(s) 506
Eco88I CYCGRG 2 cut(s) 10, 507
EcoRI GAATTC 1 cut(s) 394
EcoRII CCWGG 1 cut(s) 487
EcoT22I ATGCAT 1 cut(s) 244
Esp3I CGTCTC 2 cut(s) 170, 305
FaiI YATR 9 cut(s) 28, 52, 173, 231, 240, 332, 430, 464, 541
FokI GGATG 1 cut(s) 299
GsaI CCCAGC 1 cut(s) 218
HapII CCGG 1 cut(s) 508
HinfI GANTC 4 cut(s) 8, 65, 492, 497
HpaII CCGG 1 cut(s) 508
HphI GGTGA 1 cut(s) 496
Hpy188I TCNGA 3 cut(s) 37, 136, 518
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 2 cut(s) 97, 270
HpyCH4V TGCA 3 cut(s) 175, 242, 477
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 230, 239
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 2 cut(s) 97, 270
Kzo9I GATC 3 cut(s) 37, 406, 513
LmnI GCTCC 1 cut(s) 38
LweI GCATC 2 cut(s) 251, 277
MaeII ACGT 2 cut(s) 97, 270
MaeIII GTNAC 6 cut(s) 14, 111, 271, 413, 443, 451
MalI GATC 3 cut(s) 39, 408, 515
MboI GATC 3 cut(s) 37, 406, 513
MluCI AATT 2 cut(s) 57, 394
MlyI GAGTC 3 cut(s) 2, 59, 506
MmeI TCCRAC 2 cut(s) 95, 227
MnlI CCTC 2 cut(s) 344, 527
Mph1103I ATGCAT 1 cut(s) 244
MseI TTAA 1 cut(s) 438
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 3 cut(s) 489, 508, 509
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 1 cut(s) 489
MwoI GCNNNNNNNGC 3 cut(s) 153, 230, 239
NciI CCSGG 2 cut(s) 508, 509
NdeII GATC 3 cut(s) 37, 406, 513
NmuCI GTSAC 4 cut(s) 111, 271, 413, 451
NsiI ATGCAT 1 cut(s) 244
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 492
PfoI TCCNGGA 1 cut(s) 487
PleI GAGTC 3 cut(s) 2, 59, 505
PpsI GAGTC 3 cut(s) 2, 59, 505
Psp1406I AACGTT 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 487
PspFI CCCAGC 1 cut(s) 214
PspGI CCWGG 1 cut(s) 487
PstNI CAGNNNCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 3 cut(s) 37, 406, 513
SchI GAGTC 3 cut(s) 2, 59, 506
ScrFI CCNGG 3 cut(s) 489, 508, 509
SetI ASST 9 cut(s) 35, 100, 149, 192, 273, 355, 380, 427, 472
SfaNI GCATC 2 cut(s) 251, 277
SmaI CCCGGG 1 cut(s) 509
Sse9I AATT 2 cut(s) 57, 394
SsiI CCGC 1 cut(s) 432
SspI AATATT 1 cut(s) 340
StyD4I CCNGG 3 cut(s) 487, 506, 507
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 2 cut(s) 100, 273
TaqI TCGA 1 cut(s) 495
TasI AATT 2 cut(s) 57, 394
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 1 cut(s) 492
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 2 cut(s) 325, 416
TseFI GTSAC 4 cut(s) 111, 271, 413, 451
Tsp45I GTSAC 4 cut(s) 111, 271, 413, 451
TspDTI ATGAA 1 cut(s) 185
TspGWI ACGGA 2 cut(s) 152, 270
TspMI CCCGGG 1 cut(s) 507
TspRI CASTG 2 cut(s) 325, 416
XapI RAATTY 2 cut(s) 57, 394
XmaI CCCGGG 1 cut(s) 507
Zsp2I ATGCAT 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.