Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Forward (+)

31532531 .. 31541238

Gene Structure 8708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG286300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGGGGCGGCGATTGATTGTAGATGTCTTCCTGGATTTGAATCTATCAACCCGGGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCGTTGGAGATGTTTGCAGATCGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGAAGAACCTGGTTGGAGGATGCGCCATATATGGTTCTGTCACCTTCAGGTAAAGAAGATTGCAAACAAGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCAGTTTTTGACGGTTCAAGCTGTAGTAAGCAGAGGCTTCCTTTGAGATATGGAAGAAGAGATGAGGGTACTTCGAACGTAGTTTTCCTCAAGGAGGTTGTCATGTCTTCTGCAGCTCCAGCTCCAGATGCGGTTGTTCCAAAAGGAAGCAGGAAAAATGATTACGCTGTGCACCGTATGCTTGGGGCAAAAGACTTGGCACAATTATTACTTGAATGCAAAGTCTATGATGACAGGTCCACTCGGTCTGGTCCCTCTGAATCCAAAATTGTATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

174

Amino Acids

19.07

Weight (kDa)

6.57

Isoelectric Point (pI)

57.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	8, 377
AcsI	RAATTY	1 cut(s)	82
AcuI	CTGAAG	2 cut(s)	51, 177
AfaI	GTAC	1 cut(s)	316
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	4 cut(s)	41, 235, 264, 461
AjnI	CCWGG	2 cut(s)	31, 155
AjuI	GAANNNNNNNTTGG	1 cut(s)	503
AluBI	AGCT	3 cut(s)	267, 362, 368
AluI	AGCT	3 cut(s)	267, 362, 368
Alw21I	GWGCWC	1 cut(s)	420
Alw44I	GTGCAC	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	52
ApaLI	GTGCAC	1 cut(s)	416
ApeKI	GCWGC	2 cut(s)	245, 359
ApoI	RAATTY	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	85
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	2 cut(s)	483, 497
AsuC2I	CCSGG	2 cut(s)	53, 54
AsuHPI	GGTGA	1 cut(s)	180
AsuII	TTCGAA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	2 cut(s)	483, 497
BaeGI	GKGCMC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	20, 345
Bbv12I	GWGCWC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	232, 371
BciT130I	CCWGG	2 cut(s)	33, 157
BcnI	CCSGG	2 cut(s)	53, 54
BfmI	CTRYAG	3 cut(s)	246, 268, 357
BisI	GCNGC	3 cut(s)	9, 246, 360
BlsI	GCNGC	3 cut(s)	10, 247, 361
Bme1390I	CCNGG	4 cut(s)	33, 53, 54, 157
Bme18I	GGWCC	2 cut(s)	483, 497
BmeT110I	CYCGRG	1 cut(s)	52
BmgT120I	GGNCC	2 cut(s)	483, 497
BmiI	GGNNCC	1 cut(s)	499
BmrFI	CCNGG	4 cut(s)	33, 53, 54, 157
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	157, 364
BmuI	ACTGGG	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	20, 345
BpmI	CTGGAG	2 cut(s)	348, 354
Bpu14I	TTCGAA	1 cut(s)	320
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	2 cut(s)	53, 54
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	33, 157
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	1 cut(s)	172
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseNI	ACTGG	1 cut(s)	150
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	2 cut(s)	232, 371
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	483
BsmI	GAATGC	1 cut(s)	467
BsoBI	CYCGRG	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	107
BspACI	CCGC	2 cut(s)	8, 377
BspLI	GGNNCC	1 cut(s)	499
BspMAI	CTGCAG	2 cut(s)	250, 361
BspT104I	TTCGAA	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	107
Bst2UI	CCWGG	2 cut(s)	33, 157
Bst4CI	ACNGT	3 cut(s)	239, 260, 422
Bst6I	CTCTTC	1 cut(s)	298
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstBI	TTCGAA	1 cut(s)	320
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	172
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	107
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 374, 424
BstNI	CCWGG	2 cut(s)	33, 157
BstSCI	CCNGG	4 cut(s)	31, 51, 52, 155
BstSFI	CTRYAG	3 cut(s)	246, 268, 357
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	2 cut(s)	232, 371
BstV2I	GAAGAC	2 cut(s)	20, 345
BtsCI	GGATG	1 cut(s)	172
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	483, 497
Cfr9I	CCCGGG	1 cut(s)	52
CsiI	ACCWGGT	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	2 cut(s)	136, 349
CviJI	RGCY	6 cut(s)	218, 245, 267, 283, 362, 368
CviKI_1	RGCY	6 cut(s)	218, 245, 267, 283, 362, 368
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	1 cut(s)	109
DpnII	GATC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	298
EarI	CTCTTC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	483, 497
Eco57I	CTGAAG	2 cut(s)	51, 177
Eco88I	CYCGRG	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	31, 155
FaeI	CATG	2 cut(s)	139, 352
FaiI	YATR	8 cut(s)	137, 175, 177, 179, 297, 350, 425, 474
FaqI	GGGAC	1 cut(s)	483
FatI	CATG	2 cut(s)	135, 348
Fnu4HI	GCNGC	3 cut(s)	9, 246, 360
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	9, 246, 360
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	3 cut(s)	9, 246, 360
GsuI	CTGGAG	2 cut(s)	348, 354
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	139, 352
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	2 cut(s)	41, 506
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	2 cut(s)	418, 486
Hpy188I	TCNGA	2 cut(s)	63, 505
Hpy188III	TCNNGA	1 cut(s)	371
Hpy8I	GTNNAC	2 cut(s)	418, 486
HpyAV	CCTTC	1 cut(s)	201
HpyCH4III	ACNGT	3 cut(s)	239, 260, 422
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	8 cut(s)	105, 126, 139, 210, 248, 359, 418, 465
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 374, 424
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	139, 352
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	107
LmnI	GCTCC	2 cut(s)	367, 373
Lsp1109I	GCAGC	2 cut(s)	232, 371
LweI	GCATC	2 cut(s)	157, 364
MabI	ACCWGGT	1 cut(s)	155
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	109
MboI	GATC	1 cut(s)	107
MboII	GAAGA	8 cut(s)	20, 78, 124, 162, 215, 312, 315, 345
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	5 cut(s)	82, 115, 121, 449, 513
MmeI	TCCRAC	2 cut(s)	73, 141
MnlI	CCTC	7 cut(s)	157, 220, 273, 304, 334, 344, 511
MroXI	GAANNNNTTC	1 cut(s)	85
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	4 cut(s)	33, 53, 54, 157
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	2 cut(s)	33, 157
MwoI	GCNNNNNNNGC	3 cut(s)	365, 374, 424
NciI	CCSGG	2 cut(s)	53, 54
NdeII	GATC	1 cut(s)	107
NlaIII	CATG	2 cut(s)	139, 352
NlaIV	GGNNCC	1 cut(s)	499
NmuCI	GTSAC	1 cut(s)	186
NspV	TTCGAA	1 cut(s)	320
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	1 cut(s)	85
PfeI	GAWTC	2 cut(s)	41, 506
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	3 cut(s)	10, 247, 361
Psp6I	CCWGG	2 cut(s)	31, 155
PspGI	CCWGG	2 cut(s)	31, 155
PspN4I	GGNNCC	1 cut(s)	499
PspPI	GGNCC	2 cut(s)	483, 497
PstI	CTGCAG	2 cut(s)	250, 361
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SatI	GCNGC	3 cut(s)	9, 246, 360
Sau3AI	GATC	1 cut(s)	107
Sau96I	GGNCC	2 cut(s)	483, 497
ScrFI	CCNGG	4 cut(s)	33, 53, 54, 157
SduI	GDGCHC	1 cut(s)	420
SexAI	ACCWGGT	1 cut(s)	155
SfaNI	GCATC	2 cut(s)	157, 364
SfcI	CTRYAG	3 cut(s)	246, 268, 357
SfuI	TTCGAA	1 cut(s)	320
SinI	GGWCC	2 cut(s)	483, 497
SmaI	CCCGGG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	82, 115, 121, 449, 513
SsiI	CCGC	2 cut(s)	8, 377
StyD4I	CCNGG	4 cut(s)	31, 51, 52, 155
TaaI	ACNGT	3 cut(s)	239, 260, 422
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	2 cut(s)	110, 320
TaqII	GACCGA	1 cut(s)	480
TasI	AATT	5 cut(s)	82, 115, 121, 449, 513
TauI	GCSGC	1 cut(s)	11
TfiI	GAWTC	2 cut(s)	41, 506
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	2 cut(s)	245, 359
Tsp45I	GTSAC	1 cut(s)	186
TspGWI	ACGGA	1 cut(s)	79
TspMI	CCCGGG	1 cut(s)	52
VneI	GTGCAC	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	483, 497
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	82
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.