RchiOBHm_Chr2g0118351

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000479
Physical Location & Seq
Reverse (-)
30665287 .. 30665750
464 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49117

Sequence Viewer

Length: 366 bp
ATGGATGAGTACATGTGCCCCAAAATCTCTGACTTTGGTTTGGCAAAGCTGCTTCAGCCAGAGCAGACCAGAACCTCTACCGGCATTGGAAGGACTAAAGGGAATGTGGACTGGAGTGTTCCTGAGGAGGAAGCGATCTTGGATGAATTGGTCTACCATTACTTTGAGAATGGTGAGCTTAGTAAATTAATTGGGGATGAAGAGATACATAGAAGGCAACTTGAAAGGGTGATTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCATCGCTTCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGACATCCTAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Protein Analysis

121

Amino Acids

13.82

Weight (kDa)

4.8

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 153, 318
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 224
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 49, 178
AluI AGCT 2 cut(s) 49, 178
ApeKI GCWGC 1 cut(s) 49
AseI ATTAAT 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 185, 241
AxyI CCTNAGG 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 315
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme1390I CCNGG 1 cut(s) 257
BmrFI CCNGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 261
BpmI CTGGAG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 257
BseGI GGATG 6 cut(s) 10, 148, 202, 252, 265, 321
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 20
BseXI GCAGC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 2 cut(s) 255, 325
BsmFI GGGAC 2 cut(s) 255, 325
Bsp1286I GDGCHC 1 cut(s) 20
Bsp143I GATC 1 cut(s) 135
BspCNI CTCAG 1 cut(s) 115
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 80
BssMI GATC 1 cut(s) 135
Bst2UI CCWGG 1 cut(s) 257
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 1 cut(s) 195
BstDEI CTNAG 2 cut(s) 123, 179
BstF5I GGATG 6 cut(s) 10, 148, 202, 252, 265, 321
BstKTI GATC 1 cut(s) 138
BstMBI GATC 1 cut(s) 135
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstNI CCWGG 1 cut(s) 257
BstNSI RCATGY 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 255
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 36
Bsu36I CCTNAGG 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 6 cut(s) 10, 148, 202, 252, 265, 321
Cfr10I RCCGGY 1 cut(s) 80
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 13
CviJI RGCY 4 cut(s) 49, 58, 178, 265
CviKI_1 RGCY 4 cut(s) 49, 58, 178, 265
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 123, 179
DpnI GATC 1 cut(s) 137
DpnII GATC 1 cut(s) 135
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 255
FaeI CATG 1 cut(s) 16
FaiI YATR 4 cut(s) 14, 210, 284, 302
FalI AAGNNNNNCTT 2 cut(s) 228, 260
FaqI GGGAC 2 cut(s) 255, 325
FatI CATG 1 cut(s) 12
FblI GTMKAC 2 cut(s) 153, 318
Fnu4HI GCNGC 1 cut(s) 50
FokI GGATG 6 cut(s) 17, 155, 209, 239, 272, 308
Fsp4HI GCNGC 1 cut(s) 50
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 133
HapII CCGG 1 cut(s) 81
Hin1II CATG 1 cut(s) 16
HinfI GANTC 1 cut(s) 337
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 185, 241
Hpy166II GTNNAC 3 cut(s) 109, 154, 319
Hpy188I TCNGA 2 cut(s) 31, 336
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 3 cut(s) 109, 154, 319
HpyAV CCTTC 5 cut(s) 84, 207, 283, 288, 302
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpyF3I CTNAG 2 cut(s) 123, 179
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 135
LpnPI CCDG 7 cut(s) 72, 82, 94, 97, 135, 242, 269
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 261
MalI GATC 1 cut(s) 137
MboI GATC 1 cut(s) 135
MboII GAAGA 2 cut(s) 212, 298
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 3 cut(s) 146, 185, 189
MmeI TCCRAC 1 cut(s) 285
MnlI CCTC 4 cut(s) 85, 118, 121, 342
MseI TTAA 2 cut(s) 188, 234
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 1 cut(s) 135
NlaIII CATG 1 cut(s) 16
NspI RCATGY 1 cut(s) 16
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 1 cut(s) 337
PfoI TCCNGGA 1 cut(s) 255
PkrI GCNGC 1 cut(s) 51
PscI ACATGT 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 188
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 2 cut(s) 188, 234
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 135
ScrFI CCNGG 1 cut(s) 257
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 51, 77, 180, 294
SfaNI GCATC 1 cut(s) 261
SfcI CTRYAG 1 cut(s) 315
Sse9I AATT 3 cut(s) 146, 185, 189
StyD4I CCNGG 1 cut(s) 255
TaaI ACNGT 1 cut(s) 316
TasI AATT 3 cut(s) 146, 185, 189
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 2 cut(s) 188, 234
Tru9I TTAA 2 cut(s) 188, 234
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 159, 213, 299
VspI ATTAAT 1 cut(s) 188
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 153, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.