RLG00000018411

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
29418598 .. 29419188
591 bp
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UTR
Exon/CDS
Intron
RLM00000018411

Sequence Viewer

Length: 534 bp
ATGGCTTTTATAGTTTGCTATCTTCTTGCCTCTGCATTCTTCAATTATGCTGAAGCACAACAATTGCAGTCTAATATAAGCAGGGGCTATGACCGACTACCAACTCCTCATGGTTGTCTCGTTCCGTTGTTGCTGGAGTCCCCGAAAAGACTGTGGTGCATGTGGACTACTGATCGAGATGGTGGACTAGTCTCAGACAATGCCACCTTGTTCTTCACAAGTGATGGGATTGCCTTGCATTCGACAGAAGGGCGAAGTTTGGTGGTTGAGTCTCCAATGCCTATTTCTTCTGCTTCGGGTAATTTTGTGCTGTACAATGTGAGTCGGGCAATAGTATGGCAAAGCTTCCAGTACCCAACTGATACCTTGTTGCCCACTCAACCACTGCTAGCAGGGAAGGAACTTCGGTCTGCTAAATCAGAAACTGATCAGTCAACAGGCATTTTCCATCTCTCTATGCATTTTCATCTCTCCTATGGAAACAATCTGGCAATGCCTCAGATGAATCACCATTTTCAGACCAAAACATTCTAG

Protein Analysis

178

Amino Acids

19.81

Weight (kDa)

6.35

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 64 - 132 1.9e-08 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 72
AfaI GTAC 2 cut(s) 314, 353
AgsI TTSAA 1 cut(s) 43
AhlI ACTAGT 1 cut(s) 187
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 1 cut(s) 345
AluI AGCT 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 122, 196, 276
AlwNI CAGNNNCTG 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 500
AsuNHI GCTAGC 1 cut(s) 388
BccI CCATC 3 cut(s) 173, 218, 456
BclI TGATCA 1 cut(s) 427
BcoDI GTCTC 3 cut(s) 122, 196, 276
BcuI ACTAGT 1 cut(s) 187
BfaI CTAG 3 cut(s) 188, 389, 532
BmtI GCTAGC 1 cut(s) 392
BpmI CTGGAG 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 498
BseMI GCAATG 1 cut(s) 498
BseMII CTCAG 2 cut(s) 207, 512
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 124
BsmAI GTCTC 3 cut(s) 122, 196, 276
BsmFI GGGAC 1 cut(s) 124
BsmI GAATGC 2 cut(s) 35, 238
Bsp1407I TGTACA 1 cut(s) 312
Bsp143I GATC 2 cut(s) 172, 427
BspCNI CTCAG 2 cut(s) 206, 511
BspOI GCTAGC 1 cut(s) 392
BsrDI GCAATG 1 cut(s) 498
BsrGI TGTACA 1 cut(s) 312
BsrI ACTGG 1 cut(s) 349
BssMI GATC 2 cut(s) 172, 427
Bst4CI ACNGT 1 cut(s) 153
BstAUI TGTACA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 390
BstDEI CTNAG 2 cut(s) 193, 498
BstKTI GATC 2 cut(s) 175, 430
BstMAI GTCTC 3 cut(s) 122, 196, 276
BstMBI GATC 2 cut(s) 172, 427
BstNSI RCATGY 1 cut(s) 163
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 1 cut(s) 390
CaiI CAGNNNCTG 1 cut(s) 425
Csp6I GTAC 2 cut(s) 313, 352
CviAII CATG 2 cut(s) 110, 160
CviJI RGCY 3 cut(s) 5, 87, 345
CviKI_1 RGCY 3 cut(s) 5, 87, 345
CviQI GTAC 2 cut(s) 313, 352
DdeI CTNAG 2 cut(s) 193, 498
DpnI GATC 2 cut(s) 174, 429
DpnII GATC 2 cut(s) 172, 427
Eco57I CTGAAG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 462
FaeI CATG 2 cut(s) 113, 163
FaiI YATR 9 cut(s) 11, 48, 77, 90, 111, 161, 337, 458, 477
FaqI GGGAC 1 cut(s) 124
FatI CATG 2 cut(s) 109, 159
FbaI TGATCA 1 cut(s) 427
FspBI CTAG 3 cut(s) 188, 389, 532
GsuI CTGGAG 1 cut(s) 155
Hin1II CATG 2 cut(s) 113, 163
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 4 cut(s) 137, 269, 322, 505
HphI GGTGA 1 cut(s) 500
Hpy166II GTNNAC 3 cut(s) 165, 185, 435
Hpy188I TCNGA 4 cut(s) 196, 421, 501, 519
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 3 cut(s) 165, 185, 435
HpyAV CCTTC 2 cut(s) 242, 391
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4V TGCA 5 cut(s) 35, 67, 159, 238, 460
HpyF3I CTNAG 2 cut(s) 193, 498
Hsp92II CATG 2 cut(s) 113, 163
Ksp22I TGATCA 1 cut(s) 427
Kzo9I GATC 2 cut(s) 172, 427
LpnPI CCDG 6 cut(s) 67, 119, 362, 378, 423, 473
MaeI CTAG 3 cut(s) 188, 389, 532
MalI GATC 2 cut(s) 174, 429
MboI GATC 2 cut(s) 172, 427
MboII GAAGA 4 cut(s) 14, 31, 205, 279
MfeI CAATTG 1 cut(s) 62
MluCI AATT 3 cut(s) 43, 62, 301
MlyI GAGTC 3 cut(s) 146, 278, 331
MnlI CCTC 3 cut(s) 40, 117, 507
Mph1103I ATGCAT 1 cut(s) 462
MunI CAATTG 1 cut(s) 62
Mva1269I GAATGC 2 cut(s) 35, 238
NdeII GATC 2 cut(s) 172, 427
NheI GCTAGC 1 cut(s) 388
NlaIII CATG 2 cut(s) 113, 163
NsiI ATGCAT 1 cut(s) 462
NspI RCATGY 1 cut(s) 163
PctI GAATGC 2 cut(s) 35, 238
PfeI GAWTC 1 cut(s) 505
PleI GAGTC 3 cut(s) 145, 277, 330
PpsI GAGTC 3 cut(s) 145, 277, 330
PstNI CAGNNNCTG 1 cut(s) 425
RsaI GTAC 2 cut(s) 314, 353
RsaNI GTAC 2 cut(s) 313, 352
Sau3AI GATC 2 cut(s) 172, 427
SchI GAGTC 3 cut(s) 146, 278, 331
SetI ASST 3 cut(s) 209, 347, 368
SpeI ACTAGT 1 cut(s) 187
Sse9I AATT 3 cut(s) 43, 62, 301
SspMI CTAG 3 cut(s) 188, 389, 532
TaaI ACNGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 175, 242
TaqII GACCGA 2 cut(s) 108, 396
TasI AATT 3 cut(s) 43, 62, 301
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 1 cut(s) 505
TscAI CASTG 1 cut(s) 390
TspDTI ATGAA 2 cut(s) 455, 518
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 390
XceI RCATGY 1 cut(s) 163
XspI CTAG 3 cut(s) 188, 389, 532
Zsp2I ATGCAT 1 cut(s) 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.