Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

35692924 .. 35693547

Gene Structure 624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG300300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCAAACTGATGGAAACCTTGTTCAGTTCCCGGCATCTGCCCCGACATCTACTCCGTATGCTTACTATACATCTAATACACCAGGAAGTGGAAACAATGTGACACTAAACTTGGATGTTGATGGCCATCTCTACTTACTCAACAACACTGGTTTCACTATACATAATTTTACGAATGGAGCTATTGATGAAGGCAAATCTTATCTTGTGAGACTTGATGTAGATGGAATTCTTCGCTTGTATTCGTATAGTTTGAAGAACAATGGAAATTGGTCAGTTGAGTGGTCATCTTCAAGAAATAAGTGTGTCCCTTTTGGTCTATGCGGATTTAATAGTTACTGTGTCACAAAGGATTTGGAAGCAGAATGCAAATGCCTTCCAGGATTTGAGTTTATCACCCCGGGGGATCAGACTTCAGGCTGTGGGAGGAATATGGTTGCAAATTTTTGTAAGTCAGAGAATGAAAACTTCACATACATCATGGAAGAATTGCCCTACACAAGATGGGAAAATGTTGCATACATGACTTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCAGCAATTTTCACAGATGGAAGCTGCAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

207

Amino Acids

23.08

Weight (kDa)

4.62

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	64 - 130	3.9e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	89
AciI	CCGC	1 cut(s)	324
AclWI	GGATC	1 cut(s)	414
AcoI	YGGCCR	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	228, 442
AcuI	CTGAAG	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	89
AgsI	TTSAA	2 cut(s)	256, 294
AjnI	CCWGG	2 cut(s)	82, 379
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	2 cut(s)	182, 612
AluI	AGCT	2 cut(s)	182, 612
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	414
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	2 cut(s)	124, 561
ApeKI	GCWGC	2 cut(s)	590, 612
ApoI	RAATTY	2 cut(s)	228, 442
AsuC2I	CCSGG	3 cut(s)	32, 401, 402
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	400
BalI	TGGCCA	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	599, 602
BccI	CCATC	6 cut(s)	5, 116, 135, 218, 498, 599
BciT130I	CCWGG	2 cut(s)	84, 381
BcnI	CCSGG	3 cut(s)	32, 401, 402
BcoDI	GTCTC	1 cut(s)	205
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	2 cut(s)	591, 613
BlsI	GCNGC	2 cut(s)	592, 614
Bme1390I	CCNGG	5 cut(s)	32, 84, 381, 401, 402
BmeT110I	CYCGRG	1 cut(s)	400
BmrFI	CCNGG	5 cut(s)	32, 84, 381, 401, 402
BmsI	GCATC	1 cut(s)	44
BpuMI	CCSGG	3 cut(s)	32, 401, 402
BsaBI	GATNNNNATC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	399, 400, 401
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	84, 381
BseDI	CCNNGG	3 cut(s)	399, 400, 401
BseGI	GGATG	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	154
BseXI	GCAGC	2 cut(s)	599, 602
BshFI	GGCC	2 cut(s)	126, 563
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	2 cut(s)	32, 401
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	293
BsmI	GAATGC	2 cut(s)	371, 557
BsnI	GGCC	2 cut(s)	126, 563
BsoBI	CYCGRG	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	406
BspACI	CCGC	1 cut(s)	324
BspANI	GGCC	2 cut(s)	126, 563
BspMAI	CTGCAG	1 cut(s)	617
BspPI	GGATC	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	399, 400, 401
BssMI	GATC	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	84, 381
Bst4CI	ACNGT	2 cut(s)	341, 584
BstC8I	GCNNGC	1 cut(s)	565
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	1 cut(s)	406
BstNI	CCWGG	2 cut(s)	84, 381
BstSCI	CCNGG	5 cut(s)	30, 82, 379, 399, 400
BstSFI	CTRYAG	1 cut(s)	613
BstV1I	GCAGC	2 cut(s)	599, 602
BsuRI	GGCC	2 cut(s)	126, 563
BtsCI	GGATG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	565
Cfr9I	CCCGGG	1 cut(s)	400
CviAII	CATG	2 cut(s)	481, 523
CviJI	RGCY	5 cut(s)	126, 182, 420, 563, 612
CviKI_1	RGCY	5 cut(s)	126, 182, 420, 563, 612
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
EaeI	YGGCCR	1 cut(s)	124
Eco147I	AGGCCT	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	400
EcoRI	GAATTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	82, 379
FaeI	CATG	2 cut(s)	484, 526
FalI	AAGNNNNNCTT	2 cut(s)	551, 583
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	2 cut(s)	480, 522
Fnu4HI	GCNGC	2 cut(s)	591, 613
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	591, 613
GluI	GCNGC	2 cut(s)	591, 613
HaeIII	GGCC	2 cut(s)	126, 563
HapII	CCGG	2 cut(s)	32, 401
Hin1II	CATG	2 cut(s)	484, 526
HpaII	CCGG	2 cut(s)	32, 401
HphI	GGTGA	1 cut(s)	388
Hpy188I	TCNGA	3 cut(s)	411, 457, 541
Hpy188III	TCNNGA	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	185, 386
HpyCH4III	ACNGT	2 cut(s)	341, 584
HpyCH4V	TGCA	7 cut(s)	4, 369, 440, 518, 555, 579, 615
Hsp92II	CATG	2 cut(s)	484, 526
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	9 cut(s)	45, 69, 96, 135, 366, 393, 402, 414, 577
Lsp1109I	GCAGC	2 cut(s)	599, 602
LweI	GCATC	1 cut(s)	44
MaeIII	GTNAC	3 cut(s)	100, 335, 343
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	5 cut(s)	224, 268, 282, 497, 560
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	6 cut(s)	166, 228, 268, 442, 488, 594
MluNI	TGGCCA	1 cut(s)	126
MnlI	CCTC	2 cut(s)	420, 565
Mox20I	TGGCCA	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	1 cut(s)	330
Msp20I	TGGCCA	1 cut(s)	126
MspI	CCGG	2 cut(s)	32, 401
MspR9I	CCNGG	5 cut(s)	32, 84, 381, 401, 402
Mva1269I	GAATGC	2 cut(s)	371, 557
MvaI	CCWGG	2 cut(s)	84, 381
NciI	CCSGG	3 cut(s)	32, 401, 402
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	484, 526
NmuCI	GTSAC	2 cut(s)	100, 343
PceI	AGGCCT	1 cut(s)	563
PctI	GAATGC	2 cut(s)	371, 557
PflFI	GACNNNGTC	1 cut(s)	529
PflMI	CCANNNNNTGG	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	592, 614
Psp6I	CCWGG	2 cut(s)	82, 379
PspGI	CCWGG	2 cut(s)	82, 379
PstI	CTGCAG	1 cut(s)	617
PsyI	GACNNNGTC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	2 cut(s)	591, 613
Sau3AI	GATC	1 cut(s)	406
ScrFI	CCNGG	5 cut(s)	32, 84, 381, 401, 402
SetI	ASST	3 cut(s)	21, 184, 614
SfaNI	GCATC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	613
SmaI	CCCGGG	1 cut(s)	402
Sse9I	AATT	6 cut(s)	166, 228, 268, 442, 488, 594
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	1 cut(s)	324
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	5 cut(s)	30, 82, 379, 399, 400
TaaI	ACNGT	2 cut(s)	341, 584
TasI	AATT	6 cut(s)	166, 228, 268, 442, 488, 594
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TscAI	CASTG	1 cut(s)	154
TseFI	GTSAC	2 cut(s)	100, 343
TseI	GCWGC	2 cut(s)	590, 612
Tsp45I	GTSAC	2 cut(s)	100, 343
TspDTI	ATGAA	2 cut(s)	204, 477
TspGWI	ACGGA	1 cut(s)	45
TspMI	CCCGGG	1 cut(s)	400
TspRI	CASTG	1 cut(s)	154
Tth111I	GACNNNGTC	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	89
XapI	RAATTY	2 cut(s)	228, 442
XmaI	CCCGGG	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.