RchiOBHm_Chr2g0118641

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
30793616 .. 30794080
465 bp
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UTR
Exon/CDS
Intron
PRQ49141

Sequence Viewer

Length: 465 bp
ATGGATGAGTACATGTGCCCCAAAATCTCTGACTTTGGTTTGGCAAAGTTGCTTCAGCAAGACCAGACTAGAACCACTACCAGCATTAGAGGGACTAAAGGGTATGTTGCACCTGAGTGGCATAGGAAAATGCCCATTACAGTTAAAGCAGATGTTTATAGCTTTGGAATTGTGTTGTTGGAGATTGTGTGCTATCGAAGGAATGTAGACTGGAGTCTTCCTCATGATGAAGCTATCTTGGATGAATTGGTCTACCATTACTTCGAGAGTGGTGAACTCAGTAAATTTCTTGGGGATGAAGAGATAAACAGAAGGCAATTTGAAAGGGTGATTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCATCGCTTCGTCCTTATATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGATATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Protein Analysis

154

Amino Acids

17.9

Weight (kDa)

5.4

Isoelectric Point (pI)

47.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 5 - 132 1.4e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 7 - 131 6.2e-15 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 207, 252
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 1 cut(s) 12
AgsI TTSAA 1 cut(s) 323
AjnI CCWGG 1 cut(s) 354
AleI CACNNNNGTG 1 cut(s) 115
AluBI AGCT 2 cut(s) 162, 233
AluI AGCT 2 cut(s) 162, 233
ApoI RAATTY 1 cut(s) 284
AsuHPI GGTGA 2 cut(s) 284, 340
BaeGI GKGCMC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 209
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 356
BfaI CTAG 1 cut(s) 69
BfmI CTRYAG 1 cut(s) 414
Bme1390I CCNGG 1 cut(s) 356
BmrFI CCNGG 1 cut(s) 356
BmsI GCATC 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 213
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 205, 237
BpmI CTGGAG 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 356
BseGI GGATG 5 cut(s) 10, 247, 301, 351, 364
BseMII CTCAG 2 cut(s) 105, 292
BseNI ACTGG 1 cut(s) 215
BseSI GKGCMC 1 cut(s) 20
BslFI GGGAC 3 cut(s) 106, 354, 424
BsmFI GGGAC 3 cut(s) 106, 354, 424
Bsp1286I GDGCHC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 106, 291
BspHI TCATGA 1 cut(s) 223
BsrI ACTGG 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 142, 415
Bst6I CTCTTC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 114, 278
BstF5I GGATG 5 cut(s) 10, 247, 301, 351, 364
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 16
BstPAI GACNNNNGTC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 354
BstSFI CTRYAG 1 cut(s) 414
BstSLI GKGCMC 1 cut(s) 20
BstV2I GAAGAC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 5 cut(s) 10, 247, 301, 351, 364
CciI TCATGA 1 cut(s) 223
Csp6I GTAC 1 cut(s) 10
CviAII CATG 2 cut(s) 13, 224
CviJI RGCY 3 cut(s) 162, 233, 364
CviKI_1 RGCY 3 cut(s) 162, 233, 364
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 2 cut(s) 114, 278
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco32I GATATC 1 cut(s) 421
Eco57I CTGAAG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 421
FaeI CATG 2 cut(s) 16, 227
FaiI YATR 8 cut(s) 14, 105, 123, 159, 225, 381, 383, 401
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 3 cut(s) 106, 354, 424
FatI CATG 2 cut(s) 12, 223
FblI GTMKAC 2 cut(s) 207, 252
FokI GGATG 5 cut(s) 17, 254, 308, 338, 371
FspBI CTAG 1 cut(s) 69
GsuI CTGGAG 1 cut(s) 232
Hin1II CATG 2 cut(s) 16, 227
HinfI GANTC 2 cut(s) 214, 436
HphI GGTGA 2 cut(s) 284, 340
Hpy166II GTNNAC 3 cut(s) 208, 253, 275
Hpy188I TCNGA 2 cut(s) 31, 435
Hpy188III TCNNGA 2 cut(s) 224, 265
Hpy8I GTNNAC 3 cut(s) 208, 253, 275
HpyAV CCTTC 4 cut(s) 192, 306, 382, 401
HpyCH4III ACNGT 2 cut(s) 142, 415
HpyCH4V TGCA 2 cut(s) 110, 351
HpyF3I CTNAG 2 cut(s) 114, 278
Hsp92II CATG 2 cut(s) 16, 227
LpnPI CCDG 6 cut(s) 77, 94, 126, 196, 341, 368
LweI GCATC 1 cut(s) 360
MaeI CTAG 1 cut(s) 69
MboII GAAGA 3 cut(s) 209, 311, 397
MhlI GDGCHC 1 cut(s) 20
MluCI AATT 4 cut(s) 168, 245, 284, 317
MlyI GAGTC 1 cut(s) 223
MmeI TCCRAC 2 cut(s) 159, 384
MnlI CCTC 3 cut(s) 83, 231, 441
MseI TTAA 2 cut(s) 144, 333
MslI CAYNNNNRTG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
NlaIII CATG 2 cut(s) 16, 227
NspI RCATGY 1 cut(s) 16
OliI CACNNNNGTG 1 cut(s) 115
PagI TCATGA 1 cut(s) 223
PciI ACATGT 1 cut(s) 12
PfeI GAWTC 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 354
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
PscI ACATGT 1 cut(s) 12
PshAI GACNNNNGTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 115
SaqAI TTAA 2 cut(s) 144, 333
SchI GAGTC 1 cut(s) 223
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 20
SetI ASST 4 cut(s) 115, 164, 235, 393
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 115
Sse9I AATT 4 cut(s) 168, 245, 284, 317
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 142, 415
TaqI TCGA 2 cut(s) 196, 264
TasI AATT 4 cut(s) 168, 245, 284, 317
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 1 cut(s) 436
Tru1I TTAA 2 cut(s) 144, 333
Tru9I TTAA 2 cut(s) 144, 333
TspDTI ATGAA 4 cut(s) 243, 258, 312, 398
XapI RAATTY 1 cut(s) 284
XceI RCATGY 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 207, 252
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.