Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Forward (+)

31426055 .. 31428627

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG285900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAATCTCACCGATGGAGGTCTTCCCACTAGAGGAAATTCTTATCTTATGAGAATTGATGCGGATGGGATTTTTCGTCTGTATTCGTATGATCTTGAACAGAAAGGAAATTGGTCCCCTGAATGGTCATCTTCAACGGATAGATGTGTCCCTAAAGGTATTTGCGGATTTAATAGTTACTGTGTAACAATGGGCTGTACATGTCTTCCTGGATTCGAATCTGTCAACCCGGGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCGTTGGAGATGCTTGCAGATCGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGCGGCACAGCATGGGAGGATGCGCCATATATGGTTCTGTCACCTTCAGGTACAGAAGATTGCAAACAGGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCCGTTCTTCAAGGTGCAAGCTGTAAAAAACAGAGGCTTCCTTTGAGATATGGAAGAAGAGTTTCGGGTACTTCGAACATAGTTTTCCTCAAGGAGGTTGTCATGTCTCCTGCAGCTCCAGCTCCAGACGCAGTTGTTCCAAAAGGAAGCAGGAAAAATGGTAGAATTCAAAAAGAAAATTGGGTTTTGTATCTTTCCTACAGAGAAGGTGATGGTGGGCGTATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

216

Amino Acids

23.69

Weight (kDa)

7.93

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	62, 165, 327
AcsI	RAATTY	3 cut(s)	37, 259, 588
AcuI	CTGAAG	2 cut(s)	228, 354
AfaI	GTAC	3 cut(s)	199, 376, 493
AfiI	CCNNNNNNNGG	3 cut(s)	32, 123, 517
AflIII	ACRYGT	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	98, 135, 412, 434, 593
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	3 cut(s)	444, 539, 545
AluI	AGCT	3 cut(s)	444, 539, 545
Alw26I	GTCTC	1 cut(s)	534
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	393
ApeKI	GCWGC	2 cut(s)	422, 536
ApoI	RAATTY	3 cut(s)	37, 259, 588
Asp700I	GAANNNNTTC	2 cut(s)	262, 484
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	114
AsuC2I	CCSGG	2 cut(s)	230, 231
AsuHPI	GGTGA	2 cut(s)	357, 644
AsuII	TTCGAA	2 cut(s)	216, 497
AvaI	CYCGRG	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	114
BbsI	GAAGAC	2 cut(s)	14, 197
BbvI	GCAGC	2 cut(s)	409, 548
BccI	CCATC	3 cut(s)	8, 59, 629
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	2 cut(s)	230, 231
BcoDI	GTCTC	1 cut(s)	534
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	2 cut(s)	534, 622
BisI	GCNGC	3 cut(s)	328, 423, 537
BlsI	GCNGC	3 cut(s)	329, 424, 538
Bme1390I	CCNGG	3 cut(s)	210, 230, 231
Bme18I	GGWCC	1 cut(s)	114
BmeT110I	CYCGRG	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	3 cut(s)	210, 230, 231
BmrI	ACTGGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	49, 265, 334
BmuI	ACTGGG	1 cut(s)	332
BpiI	GAAGAC	2 cut(s)	14, 197
BpmI	CTGGAG	2 cut(s)	525, 531
Bpu14I	TTCGAA	2 cut(s)	216, 497
BpuEI	CTTGAG	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	230, 231
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 123, 517
Bse1I	ACTGG	1 cut(s)	327
Bse8I	GATNNNNATC	1 cut(s)	217
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	70, 349
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	3 cut(s)	32, 123, 517
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	409, 548
BshFI	GGCC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	2 cut(s)	100, 134
BslI	CCNNNNNNNGG	3 cut(s)	32, 123, 517
BsmAI	GTCTC	1 cut(s)	534
BsmFI	GGGAC	2 cut(s)	100, 134
BsnI	GGCC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	229
Bsp119I	TTCGAA	2 cut(s)	216, 497
Bsp1407I	TGTACA	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	91, 284
BspACI	CCGC	3 cut(s)	62, 165, 327
BspANI	GGCC	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	538
BspT104I	TTCGAA	2 cut(s)	216, 497
BsrGI	TGTACA	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	2 cut(s)	91, 284
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	182, 416
Bst6I	CTCTTC	1 cut(s)	475
BstAUI	TGTACA	1 cut(s)	197
BstBI	TTCGAA	2 cut(s)	216, 497
BstC8I	GCNNGC	2 cut(s)	280, 442
BstENI	CCTNNNNNAGG	1 cut(s)	515
BstF5I	GGATG	2 cut(s)	70, 349
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	2 cut(s)	94, 287
BstMAI	GTCTC	1 cut(s)	534
BstMBI	GATC	2 cut(s)	91, 284
BstMWI	GCNNNNNNNGC	2 cut(s)	542, 551
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	204
BstSCI	CCNGG	3 cut(s)	208, 228, 229
BstSFI	CTRYAG	2 cut(s)	534, 622
BstV1I	GCAGC	2 cut(s)	409, 548
BstV2I	GAAGAC	2 cut(s)	14, 197
BsuRI	GGCC	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	70, 349
Cac8I	GCNNGC	2 cut(s)	280, 442
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	114
Cfr9I	CCCGGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	198, 375, 492
CviAII	CATG	4 cut(s)	201, 313, 336, 526
CviJI	RGCY	7 cut(s)	195, 395, 422, 444, 460, 539, 545
CviKI_1	RGCY	7 cut(s)	195, 395, 422, 444, 460, 539, 545
CviQI	GTAC	3 cut(s)	198, 375, 492
DpnI	GATC	2 cut(s)	93, 286
DpnII	GATC	2 cut(s)	91, 284
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Eco147I	AGGCCT	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	228, 354
Eco88I	CYCGRG	1 cut(s)	229
EcoNI	CCTNNNNNAGG	1 cut(s)	515
EcoRI	GAATTC	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	4 cut(s)	204, 316, 339, 529
FaqI	GGGAC	2 cut(s)	100, 134
FatI	CATG	4 cut(s)	200, 312, 335, 525
Fnu4HI	GCNGC	3 cut(s)	328, 423, 537
FokI	GGATG	2 cut(s)	77, 356
Fsp4HI	GCNGC	3 cut(s)	328, 423, 537
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	3 cut(s)	328, 423, 537
GsuI	CTGGAG	2 cut(s)	525, 531
HaeIII	GGCC	1 cut(s)	395
HapII	CCGG	1 cut(s)	230
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	4 cut(s)	204, 316, 339, 529
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	4, 213, 218
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	2 cut(s)	357, 644
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	240
Hpy188III	TCNNGA	2 cut(s)	95, 548
Hpy8I	GTNNAC	1 cut(s)	226
HpyAV	CCTTC	2 cut(s)	378, 623
HpyCH4III	ACNGT	2 cut(s)	182, 416
HpyCH4V	TGCA	6 cut(s)	282, 303, 316, 387, 440, 536
HpyF10VI	GCNNNNNNNGC	2 cut(s)	542, 551
Hsp92II	CATG	4 cut(s)	204, 316, 339, 529
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	2 cut(s)	91, 284
LmnI	GCTCC	2 cut(s)	544, 550
Lsp1109I	GCAGC	2 cut(s)	409, 548
LweI	GCATC	3 cut(s)	49, 265, 334
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	3 cut(s)	176, 184, 363
MalI	GATC	2 cut(s)	93, 286
MboI	GATC	2 cut(s)	91, 284
MboII	GAAGA	9 cut(s)	14, 123, 197, 255, 301, 392, 422, 489, 492
MluCI	AATT	8 cut(s)	37, 54, 109, 259, 292, 298, 588, 601
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	7 cut(s)	11, 26, 334, 397, 450, 511, 521
MroXI	GAANNNNTTC	2 cut(s)	262, 484
MseI	TTAA	1 cut(s)	171
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	3 cut(s)	210, 230, 231
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	542, 551
NciI	CCSGG	2 cut(s)	230, 231
NdeII	GATC	2 cut(s)	91, 284
NlaIII	CATG	4 cut(s)	204, 316, 339, 529
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	363
NspI	RCATGY	1 cut(s)	204
NspV	TTCGAA	2 cut(s)	216, 497
PceI	AGGCCT	1 cut(s)	395
PciI	ACATGT	1 cut(s)	200
PcsI	WCGNNNNNNNCGW	1 cut(s)	494
PdmI	GAANNNNTTC	2 cut(s)	262, 484
PfeI	GAWTC	3 cut(s)	4, 213, 218
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	3 cut(s)	329, 424, 538
PscI	ACATGT	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	114
PstI	CTGCAG	1 cut(s)	538
RsaI	GTAC	3 cut(s)	199, 376, 493
RsaNI	GTAC	3 cut(s)	198, 375, 492
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	3 cut(s)	328, 423, 537
Sau3AI	GATC	2 cut(s)	91, 284
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	3 cut(s)	210, 230, 231
SfaNI	GCATC	3 cut(s)	49, 265, 334
SfcI	CTRYAG	2 cut(s)	534, 622
SfuI	TTCGAA	2 cut(s)	216, 497
SinI	GGWCC	1 cut(s)	114
SmaI	CCCGGG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
Sse9I	AATT	8 cut(s)	37, 54, 109, 259, 292, 298, 588, 601
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	3 cut(s)	62, 165, 327
SspMI	CTAG	1 cut(s)	30
StuI	AGGCCT	1 cut(s)	395
StyD4I	CCNGG	3 cut(s)	208, 228, 229
TaaI	ACNGT	2 cut(s)	182, 416
TaqI	TCGA	3 cut(s)	216, 287, 497
TasI	AATT	8 cut(s)	37, 54, 109, 259, 292, 298, 588, 601
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	1 cut(s)	330
TfiI	GAWTC	3 cut(s)	4, 213, 218
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseFI	GTSAC	1 cut(s)	363
TseI	GCWGC	2 cut(s)	422, 536
Tsp45I	GTSAC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	152, 256
TspMI	CCCGGG	1 cut(s)	229
VpaK11BI	GGWCC	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	515
XapI	RAATTY	3 cut(s)	37, 259, 588
XceI	RCATGY	1 cut(s)	204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	319
XmaI	CCCGGG	1 cut(s)	229
XmnI	GAANNNNTTC	2 cut(s)	262, 484
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.