Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Forward (+)

35008651 .. 35009037

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g35150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTTGATTCAGGCAATTTTGTGATATACAATGCTCGTCAAGACATAGTATGGCAAAGTTTTGAGCACCCGACTGACACCCTTTTGCCGGGTCAGACCCTGTTTGCTGAGGACGAGCTGTTCTCCGCTAAATCAGAATCTGATCACTCAACTGGCATTTTCCGCCTCAAAATGCAAGCCGATGGAAACCTTGTCCAATACCCTGTAAATACTCCAGACACACGTGCATATGCCTATTATGCATCTGGTACGTATGGGAGAGGAAAGAACGTGACACTTAATTTTGGTGCTGATGGCCATCTCTACTTGCTAAATGATACCAGTTCGAATATCAAGAATATAACAGATGGAGGTCTTCCTCTGATCAAGCAACAATTTATCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

129

Amino Acids

14.26

Weight (kDa)

4.92

Isoelectric Point (pI)

28.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	1 - 36	1.2e-09	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	126, 163
AcoI	YGGCCR	1 cut(s)	295
AcvI	CACGTG	1 cut(s)	224
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	88
AflIII	ACRYGT	1 cut(s)	221
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	1 cut(s)	69
AlwNI	CAGNNNCTG	2 cut(s)	100, 140
AoxI	GGCC	1 cut(s)	295
AsuC2I	CCSGG	1 cut(s)	90
AsuII	TTCGAA	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	297
BbrPI	CACGTG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	108
BccI	CCATC	4 cut(s)	176, 287, 306, 341
BclI	TGATCA	2 cut(s)	142, 363
BcnI	CCSGG	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	1 cut(s)	347
BplI	GAGNNNNNCTC	2 cut(s)	107, 139
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	108
Bpu14I	TTCGAA	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	90
BsaAI	YACGTR	2 cut(s)	224, 252
BsaBI	GATNNNNATC	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	2 cut(s)	157, 321
Bse8I	GATNNNNATC	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	1 cut(s)	99
BseNI	ACTGG	2 cut(s)	157, 321
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	88
BsnI	GGCC	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	2 cut(s)	142, 363
BspACI	CCGC	2 cut(s)	126, 163
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	326
BsrI	ACTGG	2 cut(s)	157, 321
BssMI	GATC	2 cut(s)	142, 363
BstBAI	YACGTR	2 cut(s)	224, 252
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	145, 366
BstMBI	GATC	2 cut(s)	142, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	162, 239
BstSCI	CCNGG	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	347
BsuRI	GGCC	1 cut(s)	297
Cac8I	GCNNGC	1 cut(s)	177
CaiI	CAGNNNCTG	2 cut(s)	100, 140
Csp6I	GTAC	1 cut(s)	249
CviJI	RGCY	3 cut(s)	118, 179, 297
CviKI_1	RGCY	3 cut(s)	118, 179, 297
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	108
DpnI	GATC	2 cut(s)	144, 365
DpnII	GATC	2 cut(s)	142, 363
EaeI	YGGCCR	1 cut(s)	295
EciI	GGCGGA	1 cut(s)	152
Eco105I	TACGTA	1 cut(s)	252
Eco72I	CACGTG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	244
FaiI	YATR	9 cut(s)	28, 47, 52, 229, 231, 240, 255, 341, 385
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	2 cut(s)	142, 363
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	89
HinfI	GANTC	2 cut(s)	8, 137
HpaII	CCGG	1 cut(s)	89
Hpy188I	TCNGA	4 cut(s)	96, 136, 142, 363
Hpy188III	TCNNGA	3 cut(s)	41, 215, 334
HpyCH4IV	ACGT	3 cut(s)	223, 251, 270
HpyCH4V	TGCA	3 cut(s)	175, 227, 242
HpyF10VI	GCNNNNNNNGC	2 cut(s)	162, 239
HpyF3I	CTNAG	1 cut(s)	108
HpySE526I	ACGT	3 cut(s)	223, 251, 270
Ksp22I	TGATCA	2 cut(s)	142, 363
Kzo9I	GATC	2 cut(s)	142, 363
LpnPI	CCDG	7 cut(s)	102, 113, 138, 216, 228, 231, 334
LweI	GCATC	1 cut(s)	251
MaeII	ACGT	3 cut(s)	223, 251, 270
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	2 cut(s)	144, 365
MboI	GATC	2 cut(s)	142, 363
MboII	GAAGA	1 cut(s)	347
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	3 cut(s)	16, 280, 374
MluNI	TGGCCA	1 cut(s)	297
MnlI	CCTC	5 cut(s)	103, 176, 254, 344, 369
Mox20I	TGGCCA	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	297
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	2 cut(s)	162, 239
NciI	CCSGG	1 cut(s)	90
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	142, 363
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	8, 137
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
Ppu21I	YACGTR	2 cut(s)	224, 252
PspCI	CACGTG	1 cut(s)	224
PstNI	CAGNNNCTG	2 cut(s)	100, 140
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	142, 363
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	6 cut(s)	120, 192, 226, 254, 273, 355
SfaNI	GCATC	1 cut(s)	251
SfuI	TTCGAA	1 cut(s)	326
SnaBI	TACGTA	1 cut(s)	252
Sse9I	AATT	3 cut(s)	16, 280, 374
SsiI	CCGC	2 cut(s)	126, 163
StyD4I	CCNGG	1 cut(s)	88
TaiI	ACGT	3 cut(s)	226, 254, 273
TaqI	TCGA	1 cut(s)	326
TasI	AATT	3 cut(s)	16, 280, 374
TfiI	GAWTC	2 cut(s)	8, 137
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.