Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

35779226 .. 35780008

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG300800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCTTTTCTTGTAGGTTGTCTTCTTGCCTTTGCAGTTATCCTGAATGCTGAAGCAAAAGCGGGGCCATCTAATATAAGCACTGACTCTTCTTTAACACCCACTTCCAACCCCTCGTGGTTGTCAAGCTCCGGTCTGTATGACTTCGGCTTTTATAAGCAAGGCAATGGTTATGCTGTCTGGATAGTACTTCTTGCTGGAATGCCTGAAAAGACTGTAGTCTGGACTGCAAACCGTGATCACCCCTTGGTCTCCAACAATGCCACCTTGCTCTTTACATCTGGCGGGCTTTCGTTGCAATCGACTCAAGGCGAAACATCTGTGGCGACTATTACTCAGTCTGCTTTCTCTGCTTCAATGCTTGACTCGGGTAACTTTGTACTATACGACTCCGATCAGGAAATAGTATGGCAAAGTTTTGACCTTCCAACTGATACTATCTTGCCAAAACAGCGTTTGAGAGCAGGGGAATTGTTGTACTCTGCTAAATCCGAAAGTAATAGCTCAACCGGCATTTTCCGTCTCAGTATGCAAACTGATGGAAACCTTGTTCAGTTCCCGGTATCTGCCCCGGCAAGTACTCCATATGAGTACTATACATCTAAGACACCAGGAACCGGAGAGAATGTGACACTAAACTTGGATGTTGATGGCCATCTCTACTTACTCAACAATACTGGTTTCACTATACTCAATTTTACGAATGGAGCTACTGATGAAGGCAAATCTTATCTTGTGAGACTTAATGTAGATGGAATTCTTCGCTTGTACGTATTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

260

Amino Acids

28.09

Weight (kDa)

4.56

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	72 - 154	7e-19	D-mannose binding lectin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AciI	CCGC	2 cut(s)	62, 285
AcoI	YGGCCR	1 cut(s)	652
AcsI	RAATTY	1 cut(s)	756
AcuI	CTGAAG	1 cut(s)	72
AfaI	GTAC	6 cut(s)	189, 381, 479, 580, 593, 770
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	610
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	3 cut(s)	129, 504, 710
AluI	AGCT	3 cut(s)	129, 504, 710
Alw26I	GTCTC	3 cut(s)	256, 527, 733
Ama87I	CYCGRG	1 cut(s)	367
AoxI	GGCC	2 cut(s)	65, 652
ApoI	RAATTY	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	560, 572
AsuHPI	GGTGA	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	367
BalI	TGGCCA	1 cut(s)	654
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	14
BccI	CCATC	5 cut(s)	76, 533, 644, 663, 746
BciT130I	CCWGG	1 cut(s)	612
BclI	TGATCA	1 cut(s)	238
BcnI	CCSGG	2 cut(s)	560, 572
BcoDI	GTCTC	3 cut(s)	256, 527, 733
BfmI	CTRYAG	1 cut(s)	216
BmcAI	AGTACT	3 cut(s)	189, 580, 593
Bme1390I	CCNGG	3 cut(s)	560, 572, 612
BmeT110I	CYCGRG	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	66, 616
BmrFI	CCNGG	3 cut(s)	560, 572, 612
BoxI	GACNNNNGTC	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	560, 572
BsaAI	YACGTR	1 cut(s)	772
BsaBI	GATNNNNATC	1 cut(s)	654
BsaI	GGTCTC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	246, 570
BsaWI	WCCGGW	2 cut(s)	131, 617
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	682
Bse3DI	GCAATG	1 cut(s)	172
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	2 cut(s)	246, 570
BseGI	GGATG	1 cut(s)	649
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	350, 538
BseNI	ACTGG	1 cut(s)	682
BshFI	GGCC	2 cut(s)	67, 654
BsiHKCI	CYCGRG	1 cut(s)	367
BsiSI	CCGG	5 cut(s)	132, 510, 560, 572, 618
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	3 cut(s)	256, 527, 733
BsmBI	CGTCTC	1 cut(s)	527
BsmI	GAATGC	2 cut(s)	52, 207
BsnI	GGCC	2 cut(s)	67, 654
Bso31I	GGTCTC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	238, 394
BspACI	CCGC	2 cut(s)	62, 285
BspANI	GGCC	2 cut(s)	67, 654
BspCNI	CTCAG	2 cut(s)	349, 537
BspLI	GGNNCC	2 cut(s)	66, 616
BspTNI	GGTCTC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	172
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	2 cut(s)	246, 570
BssMI	GATC	2 cut(s)	238, 394
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	217, 236
Bst6I	CTCTTC	1 cut(s)	94
BstBAI	YACGTR	1 cut(s)	772
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	3 cut(s)	336, 524, 603
BstF5I	GGATG	1 cut(s)	649
BstKTI	GATC	2 cut(s)	241, 397
BstMAI	GTCTC	3 cut(s)	256, 527, 733
BstMBI	GATC	2 cut(s)	238, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 350, 451, 510
BstNI	CCWGG	1 cut(s)	612
BstPAI	GACNNNNGTC	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	558, 570, 610
BstSFI	CTRYAG	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	772
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	67, 654
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	1 cut(s)	81
Cac8I	GCNNGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	65
Csp6I	GTAC	6 cut(s)	188, 380, 478, 579, 592, 769
CviJI	RGCY	8 cut(s)	5, 67, 129, 150, 289, 504, 654, 710
CviKI_1	RGCY	8 cut(s)	5, 67, 129, 150, 289, 504, 654, 710
CviQI	GTAC	6 cut(s)	188, 380, 478, 579, 592, 769
DdeI	CTNAG	3 cut(s)	336, 524, 603
DpnI	GATC	2 cut(s)	240, 396
DpnII	GATC	2 cut(s)	238, 394
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	1 cut(s)	94
EarI	CTCTTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	772
Eco130I	CCWWGG	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	367
EcoRI	GAATTC	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	527
FauI	CCCGC	2 cut(s)	55, 278
FauNDI	CATATG	1 cut(s)	586
FbaI	TGATCA	1 cut(s)	238
FokI	GGATG	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	67, 654
HapII	CCGG	5 cut(s)	132, 510, 560, 572, 618
HinfI	GANTC	4 cut(s)	86, 304, 365, 389
HpaII	CCGG	5 cut(s)	132, 510, 560, 572, 618
HphI	GGTGA	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	394, 493
Hpy188III	TCNNGA	4 cut(s)	43, 181, 223, 398
HpyAV	CCTTC	2 cut(s)	434, 713
HpyCH4III	ACNGT	2 cut(s)	217, 236
HpyCH4IV	ACGT	1 cut(s)	771
HpyCH4V	TGCA	4 cut(s)	35, 230, 298, 532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 350, 451, 510
HpyF3I	CTNAG	3 cut(s)	336, 524, 603
HpySE526I	ACGT	1 cut(s)	771
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	238, 394
LmnI	GCTCC	2 cut(s)	134, 707
MaeII	ACGT	1 cut(s)	771
MaeIII	GTNAC	2 cut(s)	371, 628
MalI	GATC	2 cut(s)	240, 396
MboI	GATC	2 cut(s)	238, 394
MboII	GAAGA	3 cut(s)	14, 81, 752
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	3 cut(s)	470, 694, 756
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	4 cut(s)	80, 298, 359, 383
MmeI	TCCRAC	3 cut(s)	132, 279, 452
MnlI	CCTC	1 cut(s)	124
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	2 cut(s)	95, 744
Msp20I	TGGCCA	1 cut(s)	654
MspI	CCGG	5 cut(s)	132, 510, 560, 572, 618
MspR9I	CCNGG	3 cut(s)	560, 572, 612
Mva1269I	GAATGC	2 cut(s)	52, 207
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	295, 350, 451, 510
NciI	CCSGG	2 cut(s)	560, 572
NdeI	CATATG	1 cut(s)	586
NdeII	GATC	2 cut(s)	238, 394
NlaIV	GGNNCC	2 cut(s)	66, 616
NmuCI	GTSAC	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	2 cut(s)	52, 207
PleI	GAGTC	4 cut(s)	80, 298, 359, 383
PpsI	GAGTC	4 cut(s)	80, 298, 359, 383
Ppu21I	YACGTR	1 cut(s)	772
PshAI	GACNNNNGTC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	66, 616
PspPI	GGNCC	1 cut(s)	65
RsaI	GTAC	6 cut(s)	189, 381, 479, 580, 593, 770
RsaNI	GTAC	6 cut(s)	188, 380, 478, 579, 592, 769
SaqAI	TTAA	2 cut(s)	95, 744
Sau3AI	GATC	2 cut(s)	238, 394
Sau96I	GGNCC	1 cut(s)	65
ScaI	AGTACT	3 cut(s)	189, 580, 593
SchI	GAGTC	4 cut(s)	80, 298, 359, 383
ScrFI	CCNGG	3 cut(s)	560, 572, 612
SetI	ASST	8 cut(s)	19, 131, 269, 426, 506, 549, 712, 774
SfcI	CTRYAG	1 cut(s)	216
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
SnaBI	TACGTA	1 cut(s)	772
Sse9I	AATT	3 cut(s)	470, 694, 756
SsiI	CCGC	2 cut(s)	62, 285
StyD4I	CCNGG	3 cut(s)	558, 570, 610
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	2 cut(s)	217, 236
TaiI	ACGT	1 cut(s)	774
TaqI	TCGA	1 cut(s)	302
TasI	AATT	3 cut(s)	470, 694, 756
TatI	WGTACW	5 cut(s)	187, 379, 477, 578, 591
Tru1I	TTAA	2 cut(s)	95, 744
Tru9I	TTAA	2 cut(s)	95, 744
TscAI	CASTG	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	628
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	732, 766
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	756
ZrmI	AGTACT	3 cut(s)	189, 580, 593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.