Rh2AG273900

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
32640690 .. 32643002
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG273900.1

Sequence Viewer

Length: 1431 bp
ATGGCTTTTCTTGTAGGCTGTCTTCTTGCCTTTGCAGTTATCCTGAATGCTGAAGCAAAAGTGGTGCCATCTAATATAAGCACCGACTCTTCTTTAACACCCACTTCCAACTCCTCATGGTTGTCAAGCTCCGGTCTGTATGCCTTCGGCTTTTATAAGCAAGGCAATGGCTATGCTGTGGGGATAGTGCTTGCTGGAGTTCCTGAAAAGACTGTAGTCTGGACTGCAAACCGCAATGACCCCTTGGTCTCCAATAATGCCACCTTGCTCTTTACATCTAACGGGATTTCGTTGCAATCGACTCAAGGGGAAACACCTGTGGCGACCACTACTCAGTCTGCTTTCTCTGCTTCAATGCTTGACTCTGGTAACTTTGTACTATACAACTCCGATCAGGAAATAGTATGGCAAAGTTTTGACTATCCAACTGATACCATTTTGCCAAAACAGCGTTTGAAAGCAGGGGCAGAGCTGTACTCTGCTAAATCCAAAACTAATAGATCAAAAGGCATTTTCCGTCTCAACATGCAGACTGATGGAAACCTTGTTCAGTACCCGGTAGCTACTCTGGATGCTTACTATGCATCTAACACGCCAGGAAGTGGAGACAATGTGACACTAAACTTGGATGCTGATGGCCATCTCTACTTACTCAACAACACTGGTTTCACTATACACAATATTACGAATGGATCTACTGATGAAGGCAAATCTTATCTTGTGAGACTTGATGTAGATGGAATTCTTCGCTTGTATTCGTATAGTTTGAAGCAGAATGGCAACTGGTCAGTTGAGTGGTTATCTACAAGAGATAAGTGTGACCCTTTAGGTCTATGCGGATTTAATAGTTATTGTGTTTTAATGGATATGGAAGCTGAATGCAAATGCCTTCCAGGATTTGAGTTTATCACCTCGGGGGATCAGACTTCAGGCTGTGGAAGGAATATGATTGCAGATGTTTGTAAGTCAGAGAATGAAAACTTCACATACACCATGGAAGAACTGCCCGACACAAGATGGAATAATGTTGCATACATGAGTTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCCGCACTTTTTGCAGATGGAAGCTGCAGAAAGCAGAGGCTTCCTTTGAGTCATGGAAGAAGAAGGAATGTGGACCGGAGTGTTCCTGAGGAGGAAGCTATCTTGGATGAATTGGTCTACCATTACTTTGAGAGTGGTGAGCACGGTAAATTGCTTGGGGATGAAGAGATAAACAGAAGGCAATTTGAAAGGGTGATTAAAGTGGGACTTTGGTGCATCCAGGATGAGCCATCGCTTCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGACATCCCAATCCCTCCGAATCCAAGTTCTTTTCTCAATACCATCTAA

Protein Analysis

476

Amino Acids

52.6

Weight (kDa)

4.8

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 154 4.5e-19 D-mannose binding lectin
S_locus_glycop PF00954 234 - 301 1.7e-08 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 156
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 64
AccB7I CCANNNNNTGG 1 cut(s) 602
AccI GTMKAC 2 cut(s) 1218, 1383
AciI CCGC 3 cut(s) 232, 837, 1104
AclWI GGATC 2 cut(s) 700, 927
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 1 cut(s) 741
AcuI CTGAAG 2 cut(s) 72, 912
AfaI GTAC 3 cut(s) 378, 476, 554
AfiI CCNNNNNNNGG 1 cut(s) 602
AgsI TTSAA 4 cut(s) 354, 457, 769, 1289
AjnI CCWGG 3 cut(s) 595, 892, 1320
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 6 cut(s) 129, 472, 563, 875, 1125, 1199
AluI AGCT 6 cut(s) 129, 472, 563, 875, 1125, 1199
Alw21I GWGCWC 1 cut(s) 1245
Alw26I GTCTC 4 cut(s) 253, 524, 600, 718
AlwI GGATC 2 cut(s) 700, 927
Ama87I CYCGRG 1 cut(s) 913
AoxI GGCC 2 cut(s) 637, 1074
ApeKI GCWGC 1 cut(s) 1125
ApoI RAATTY 1 cut(s) 741
AspS9I GGNCC 1 cut(s) 1174
AsuC2I CCSGG 1 cut(s) 557
AsuHPI GGTGA 3 cut(s) 901, 1250, 1306
AvaI CYCGRG 1 cut(s) 913
AvaII GGWCC 1 cut(s) 1174
AxyI CCTNAGG 1 cut(s) 1188
BalI TGGCCA 1 cut(s) 639
BanI GGYRCC 1 cut(s) 64
BarI GAAGNNNNNNTAC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 14
Bbv12I GWGCWC 1 cut(s) 1245
BbvI GCAGC 1 cut(s) 1112
BccI CCATC 8 cut(s) 76, 530, 629, 648, 731, 1011, 1112, 1339
BciT130I CCWGG 3 cut(s) 597, 894, 1322
BcnI CCSGG 1 cut(s) 557
BcoDI GTCTC 4 cut(s) 253, 524, 600, 718
BfmI CTRYAG 3 cut(s) 213, 1126, 1380
BisI GCNGC 2 cut(s) 1104, 1126
BlsI GCNGC 2 cut(s) 1105, 1127
Bme1390I CCNGG 4 cut(s) 557, 597, 894, 1322
Bme18I GGWCC 1 cut(s) 1174
BmeT110I CYCGRG 1 cut(s) 913
BmgT120I GGNCC 1 cut(s) 1174
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 4 cut(s) 557, 597, 894, 1322
BmsI GCATC 4 cut(s) 562, 593, 619, 1326
BoxI GACNNNNGTC 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 14
BplI GAGNNNNNCTC 2 cut(s) 461, 493
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 557
BsaBI GATNNNNATC 1 cut(s) 639
BsaI GGTCTC 1 cut(s) 253
BsaJI CCNNGG 3 cut(s) 243, 912, 993
BsaWI WCCGGW 2 cut(s) 131, 1176
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bsc4I CCNNNNNNNGG 1 cut(s) 602
Bse1I ACTGG 2 cut(s) 667, 788
Bse21I CCTNAGG 1 cut(s) 1188
Bse3DI GCAATG 2 cut(s) 172, 241
Bse8I GATNNNNATC 1 cut(s) 639
BseBI CCWGG 3 cut(s) 597, 894, 1322
BseDI CCNNGG 3 cut(s) 243, 912, 993
BseGI GGATG 7 cut(s) 577, 634, 1213, 1267, 1317, 1330, 1386
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 1 cut(s) 602
BseMI GCAATG 2 cut(s) 172, 241
BseMII CTCAG 2 cut(s) 347, 1179
BseNI ACTGG 2 cut(s) 667, 788
BseRI GAGGAG 2 cut(s) 103, 1205
BseXI GCAGC 1 cut(s) 1112
BshFI GGCC 2 cut(s) 639, 1076
BshNI GGYRCC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 1245
BsiHKCI CYCGRG 1 cut(s) 913
BsiSI CCGG 3 cut(s) 132, 557, 1177
BslFI GGGAC 2 cut(s) 1320, 1390
BslI CCNNNNNNNGG 1 cut(s) 602
BsmAI GTCTC 4 cut(s) 253, 524, 600, 718
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 2 cut(s) 1320, 1390
BsmI GAATGC 3 cut(s) 52, 884, 1070
BsnI GGCC 2 cut(s) 639, 1076
Bso31I GGTCTC 1 cut(s) 253
BsoBI CYCGRG 1 cut(s) 913
Bsp1286I GDGCHC 1 cut(s) 1245
Bsp143I GATC 4 cut(s) 391, 500, 692, 919
Bsp19I CCATGG 1 cut(s) 993
BspACI CCGC 3 cut(s) 232, 837, 1104
BspANI GGCC 2 cut(s) 639, 1076
BspCNI CTCAG 2 cut(s) 346, 1180
BspLI GGNNCC 1 cut(s) 66
BspMAI CTGCAG 1 cut(s) 1130
BspPI GGATC 2 cut(s) 700, 927
BspT107I GGYRCC 1 cut(s) 64
BspTNI GGTCTC 1 cut(s) 253
BsrDI GCAATG 2 cut(s) 172, 241
BsrI ACTGG 2 cut(s) 667, 788
BssECI CCNNGG 3 cut(s) 243, 912, 993
BssMI GATC 4 cut(s) 391, 500, 692, 919
BssT1I CCWWGG 2 cut(s) 243, 993
Bst2UI CCWGG 3 cut(s) 597, 894, 1322
Bst4CI ACNGT 4 cut(s) 214, 1097, 1247, 1381
Bst6I CTCTTC 2 cut(s) 94, 1260
BstAPI GCANNNNNTGC 1 cut(s) 1112
BstC8I GCNNGC 2 cut(s) 192, 1078
BstDEI CTNAG 2 cut(s) 333, 1188
BstDSI CCRYGG 1 cut(s) 993
BstF5I GGATG 7 cut(s) 577, 634, 1213, 1267, 1317, 1330, 1386
BstKTI GATC 4 cut(s) 394, 503, 695, 922
BstMAI GTCTC 4 cut(s) 253, 524, 600, 718
BstMBI GATC 4 cut(s) 391, 500, 692, 919
BstMWI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
BstNI CCWGG 3 cut(s) 597, 894, 1322
BstNSI RCATGY 1 cut(s) 529
BstPAI GACNNNNGTC 1 cut(s) 215
BstSCI CCNGG 4 cut(s) 555, 595, 892, 1320
BstSFI CTRYAG 3 cut(s) 213, 1126, 1380
BstV1I GCAGC 1 cut(s) 1112
BstV2I GAAGAC 1 cut(s) 14
BstX2I RGATCY 1 cut(s) 692
BstYI RGATCY 1 cut(s) 692
Bsu36I CCTNAGG 1 cut(s) 1188
BsuRI GGCC 2 cut(s) 639, 1076
BtgI CCRYGG 1 cut(s) 993
BtgZI GCGATG 1 cut(s) 1317
BtsCI GGATG 7 cut(s) 577, 634, 1213, 1267, 1317, 1330, 1386
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 2 cut(s) 192, 1078
Cfr13I GGNCC 1 cut(s) 1174
Csp6I GTAC 3 cut(s) 377, 475, 553
CviAII CATG 5 cut(s) 117, 526, 994, 1036, 1154
CviQI GTAC 3 cut(s) 377, 475, 553
DdeI CTNAG 2 cut(s) 333, 1188
DpnI GATC 4 cut(s) 393, 502, 694, 921
DpnII GATC 4 cut(s) 391, 500, 692, 919
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 2 cut(s) 94, 1260
EarI CTCTTC 2 cut(s) 94, 1260
Eco130I CCWWGG 2 cut(s) 243, 993
Eco147I AGGCCT 1 cut(s) 1076
Eco31I GGTCTC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 1174
Eco57I CTGAAG 2 cut(s) 72, 912
Eco81I CCTNAGG 1 cut(s) 1188
Eco88I CYCGRG 1 cut(s) 913
EcoRI GAATTC 1 cut(s) 741
EcoRII CCWGG 3 cut(s) 595, 892, 1320
EcoT14I CCWWGG 2 cut(s) 243, 993
EcoT22I ATGCAT 1 cut(s) 586
ErhI CCWWGG 2 cut(s) 243, 993
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 5 cut(s) 120, 529, 997, 1039, 1157
FalI AAGNNNNNCTT 6 cut(s) 1064, 1096, 1092, 1124, 1293, 1325
FaqI GGGAC 2 cut(s) 1320, 1390
FatI CATG 5 cut(s) 116, 525, 993, 1035, 1153
FblI GTMKAC 2 cut(s) 1218, 1383
Fnu4HI GCNGC 2 cut(s) 1104, 1126
FokI GGATG 7 cut(s) 584, 641, 1220, 1274, 1304, 1337, 1373
Fsp4HI GCNGC 2 cut(s) 1104, 1126
GluI GCNGC 2 cut(s) 1104, 1126
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 2 cut(s) 639, 1076
HapII CCGG 3 cut(s) 132, 557, 1177
Hin1II CATG 5 cut(s) 120, 529, 997, 1039, 1157
HinfI GANTC 5 cut(s) 86, 301, 362, 1150, 1402
HpaII CCGG 3 cut(s) 132, 557, 1177
HphI GGTGA 3 cut(s) 901, 1250, 1306
Hpy166II GTNNAC 3 cut(s) 1174, 1219, 1384
Hpy188I TCNGA 5 cut(s) 391, 924, 970, 1054, 1401
Hpy188III TCNNGA 6 cut(s) 43, 203, 220, 395, 569, 1187
Hpy8I GTNNAC 3 cut(s) 1174, 1219, 1384
HpyAV CCTTC 9 cut(s) 154, 698, 899, 933, 1158, 1272, 1348, 1353, 1367
HpyCH4III ACNGT 4 cut(s) 214, 1097, 1247, 1381
HpyF10VI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
HpyF3I CTNAG 2 cut(s) 333, 1188
Hsp92II CATG 5 cut(s) 120, 529, 997, 1039, 1157
Kzo9I GATC 4 cut(s) 391, 500, 692, 919
LmnI GCTCC 1 cut(s) 134
Lsp1109I GCAGC 1 cut(s) 1112
LweI GCATC 4 cut(s) 562, 593, 619, 1326
MaeIII GTNAC 3 cut(s) 368, 613, 818
MalI GATC 4 cut(s) 393, 502, 694, 921
MboI GATC 4 cut(s) 391, 500, 692, 919
MboII GAAGA 9 cut(s) 14, 81, 737, 1010, 1073, 1170, 1173, 1277, 1363
MflI RGATCY 1 cut(s) 692
MhlI GDGCHC 1 cut(s) 1245
MlsI TGGCCA 1 cut(s) 639
MluCI AATT 4 cut(s) 741, 1211, 1250, 1283
MluNI TGGCCA 1 cut(s) 639
MlyI GAGTC 4 cut(s) 80, 295, 356, 1159
MmeI TCCRAC 3 cut(s) 132, 449, 1350
MnlI CCTC 7 cut(s) 124, 922, 1078, 1131, 1183, 1186, 1407
Mox20I TGGCCA 1 cut(s) 639
Mph1103I ATGCAT 1 cut(s) 586
MscI TGGCCA 1 cut(s) 639
MseI TTAA 4 cut(s) 95, 843, 860, 1299
Msp20I TGGCCA 1 cut(s) 639
MspI CCGG 3 cut(s) 132, 557, 1177
MspR9I CCNGG 4 cut(s) 557, 597, 894, 1322
Mva1269I GAATGC 3 cut(s) 52, 884, 1070
MvaI CCWGG 3 cut(s) 597, 894, 1322
MwoI GCNNNNNNNGC 4 cut(s) 347, 448, 581, 1112
NciI CCSGG 1 cut(s) 557
NcoI CCATGG 1 cut(s) 993
NdeII GATC 4 cut(s) 391, 500, 692, 919
NlaIII CATG 5 cut(s) 120, 529, 997, 1039, 1157
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 2 cut(s) 613, 818
NsiI ATGCAT 1 cut(s) 586
NspI RCATGY 1 cut(s) 529
PceI AGGCCT 1 cut(s) 1076
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PctI GAATGC 3 cut(s) 52, 884, 1070
PfeI GAWTC 1 cut(s) 1402
PflMI CCANNNNNTGG 1 cut(s) 602
PfoI TCCNGGA 2 cut(s) 892, 1320
PkrI GCNGC 2 cut(s) 1105, 1127
PleI GAGTC 4 cut(s) 80, 295, 356, 1158
PpsI GAGTC 4 cut(s) 80, 295, 356, 1158
PshAI GACNNNNGTC 1 cut(s) 215
PsiI TTATAA 1 cut(s) 156
Psp6I CCWGG 3 cut(s) 595, 892, 1320
PspGI CCWGG 3 cut(s) 595, 892, 1320
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 1174
PstI CTGCAG 1 cut(s) 1130
PsuI RGATCY 1 cut(s) 692
RsaI GTAC 3 cut(s) 378, 476, 554
RsaNI GTAC 3 cut(s) 377, 475, 553
SaqAI TTAA 4 cut(s) 95, 843, 860, 1299
SatI GCNGC 2 cut(s) 1104, 1126
Sau3AI GATC 4 cut(s) 391, 500, 692, 919
Sau96I GGNCC 1 cut(s) 1174
SchI GAGTC 4 cut(s) 80, 295, 356, 1159
ScrFI CCNGG 4 cut(s) 557, 597, 894, 1322
SduI GDGCHC 1 cut(s) 1245
SfaNI GCATC 4 cut(s) 562, 593, 619, 1326
SfcI CTRYAG 3 cut(s) 213, 1126, 1380
SinI GGWCC 1 cut(s) 1174
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 4 cut(s) 741, 1211, 1250, 1283
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 3 cut(s) 232, 837, 1104
SspI AATATT 1 cut(s) 682
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 4 cut(s) 555, 595, 892, 1320
StyI CCWWGG 2 cut(s) 243, 993
TaaI ACNGT 4 cut(s) 214, 1097, 1247, 1381
TaqI TCGA 1 cut(s) 299
TasI AATT 4 cut(s) 741, 1211, 1250, 1283
TatI WGTACW 2 cut(s) 376, 474
TauI GCSGC 1 cut(s) 1106
TfiI GAWTC 1 cut(s) 1402
Tru1I TTAA 4 cut(s) 95, 843, 860, 1299
Tru9I TTAA 4 cut(s) 95, 843, 860, 1299
TscAI CASTG 1 cut(s) 667
TseFI GTSAC 2 cut(s) 613, 818
TseI GCWGC 1 cut(s) 1125
Tsp45I GTSAC 2 cut(s) 613, 818
TspDTI ATGAA 5 cut(s) 717, 990, 1224, 1278, 1364
TspGWI ACGGA 1 cut(s) 506
TspRI CASTG 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 602
VpaK11BI GGWCC 1 cut(s) 1174
XapI RAATTY 1 cut(s) 741
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 2 cut(s) 1218, 1383
Zsp2I ATGCAT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.