Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

30794117 .. 30794560

Gene Structure 444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49142

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAATAAGCTCAATGGTGTTGTTGAATGGAATGAGGATGTGGCTCCGCGACTATATGCTTATGAACAGCTAGAGAAGATGACTGATAATTTCAAGGAGGTGGTTGGTAGAGGAGCTTCTGCAACAGTTTATAAAGGGGTGATGTTGAGTTGCCAAAAGCTAGTTGCTGTGAAGAAACTAGAGAAAGTTGCAGCTGAAGGAGCAAAAGAATTCCAGACTGAGATGAAAGTTATTGGCAGAACTCATCACCGGAGTTTAGTACGATTGCTTGGGTATTGCCTTGATGGCCCAAAGAAGCTTTTGGTGTATGAGTACATGAGCAATGGATCACTTGCAGATATACTCTTCACACCTGAGAGGAAACCTTATTGGGAAGAAAGAATGGAAATAGCTCGAAACATAGCACAGGGGTTTCTTTATCTGCATGAAGAGTGTGATACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

147

Amino Acids

16.88

Weight (kDa)

6.84

Isoelectric Point (pI)

31.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	31 - 143	4.8e-21	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	32 - 144	1.5e-17	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	132
AccII	CGCG	1 cut(s)	49
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	209
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	261, 314
AgsI	TTSAA	2 cut(s)	26, 94
AluBI	AGCT	7 cut(s)	10, 70, 116, 160, 194, 298, 392
AluI	AGCT	7 cut(s)	10, 70, 116, 160, 194, 298, 392
AlwI	GGATC	1 cut(s)	334
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	287
AsuHPI	GGTGA	2 cut(s)	151, 239
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	278
BfaI	CTAG	3 cut(s)	71, 161, 179
BglI	GCCNNNNNGGC	1 cut(s)	285
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	45
BsaWI	WCCGGW	1 cut(s)	249
Bse3DI	GCAATG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	2 cut(s)	210, 345
BseRI	GAGGAG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	250
BsnI	GGCC	1 cut(s)	288
Bsp143I	GATC	1 cut(s)	326
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	211, 346
BspFNI	CGCG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	1 cut(s)	334
BsrDI	GCAATG	1 cut(s)	328
BssMI	GATC	1 cut(s)	326
Bst4CI	ACNGT	1 cut(s)	127
Bst6I	CTCTTC	2 cut(s)	350, 423
BstDEI	CTNAG	2 cut(s)	219, 354
BstF5I	GGATG	1 cut(s)	43
BstFNI	CGCG	1 cut(s)	49
BstKTI	GATC	1 cut(s)	329
BstMBI	GATC	1 cut(s)	326
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 285
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	260, 313
CviAII	CATG	2 cut(s)	316, 425
CviJI	RGCY	9 cut(s)	10, 44, 70, 116, 160, 194, 288, 298, 392
CviKI_1	RGCY	9 cut(s)	10, 44, 70, 116, 160, 194, 288, 298, 392
CviQI	GTAC	2 cut(s)	260, 313
DdeI	CTNAG	2 cut(s)	219, 354
DpnI	GATC	1 cut(s)	328
DpnII	GATC	1 cut(s)	326
Eam1104I	CTCTTC	2 cut(s)	350, 423
EarI	CTCTTC	2 cut(s)	350, 423
Eco57I	CTGAAG	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	209
FaeI	CATG	2 cut(s)	319, 428
FatI	CATG	2 cut(s)	315, 424
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	192
FspBI	CTAG	3 cut(s)	71, 161, 179
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	250
Hin1II	CATG	2 cut(s)	319, 428
HindIII	AAGCTT	1 cut(s)	296
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	151, 239
Hpy188III	TCNNGA	1 cut(s)	214
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	122, 191, 335, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 285
HpyF3I	CTNAG	2 cut(s)	219, 354
Hsp92II	CATG	2 cut(s)	319, 428
Kzo9I	GATC	1 cut(s)	326
LmnI	GCTCC	3 cut(s)	49, 113, 200
LpnPI	CCDG	4 cut(s)	227, 263, 366, 392
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	3 cut(s)	71, 161, 179
MalI	GATC	1 cut(s)	328
MboI	GATC	1 cut(s)	326
MboII	GAAGA	5 cut(s)	88, 184, 337, 386, 440
MluCI	AATT	2 cut(s)	88, 209
MnlI	CCTC	4 cut(s)	28, 91, 104, 351
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	1 cut(s)	250
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	200, 285
NdeII	GATC	1 cut(s)	326
NlaIII	CATG	2 cut(s)	319, 428
NlaIV	GGNNCC	1 cut(s)	45
PkrI	GCNGC	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	2 cut(s)	261, 314
RsaNI	GTAC	2 cut(s)	260, 313
SatI	GCNGC	1 cut(s)	192
Sau3AI	GATC	1 cut(s)	326
Sau96I	GGNCC	1 cut(s)	287
Sse9I	AATT	2 cut(s)	88, 209
SsiI	CCGC	1 cut(s)	47
SspMI	CTAG	3 cut(s)	71, 161, 179
TaaI	ACNGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	394
TasI	AATT	2 cut(s)	88, 209
TatI	WGTACW	1 cut(s)	312
TseI	GCWGC	1 cut(s)	191
TspDTI	ATGAA	4 cut(s)	17, 78, 239, 441
XapI	RAATTY	1 cut(s)	209
XspI	CTAG	3 cut(s)	71, 161, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.