RchiOBHm_Chr2g0118361

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
30665823 .. 30666230
408 bp
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UTR
Exon/CDS
Intron
PRQ49118

Sequence Viewer

Length: 408 bp
ATGAATAAGCTAAATGGTGATGTTGAATGGAATGAGGATGTGGCTCCGCGACCATATGCTTATGAACAGCTAGAGAAGATGACTGATAATTTCAAGGAGGAGGTTGGTAGAGGAGCTTCTGTAGCAATTTATAAAGGGGTGATGTTGAGTAGCCAAAAGCTAGTTGCTGTGAAGAAACTAGAGAAGGTTGCAACTGAAGAAGGAAAAGAATTCCAGACTGAGATGAAAGTTATTGGCAGAATCCATCACTGGAGTTTAGTACGTTTGCTTGGGTATTGCCTTGATGGACCAAAGAATCTTTTGGTGTATGAGTACATGAGCAATGGTTCACTTGCAGATATTCTCTTCATACTTGAGAGGAAACCTCATTGGGAAGAAAGAATGGGAATTGCTCGAAACATAGCATGA

Protein Analysis

135

Amino Acids

15.52

Weight (kDa)

6.32

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 31 - 135 2.3e-16 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 32 - 116 1.6e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 132
AccII CGCG 1 cut(s) 49
AciI CCGC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 2 cut(s) 261, 314
AgsI TTSAA 2 cut(s) 26, 94
AluBI AGCT 4 cut(s) 10, 70, 116, 160
AluI AGCT 4 cut(s) 10, 70, 116, 160
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 29, 151
AvaII GGWCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 100, 132
BccI CCATC 2 cut(s) 252, 278
BfaI CTAG 3 cut(s) 71, 161, 179
BfmI CTRYAG 1 cut(s) 120
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 45
BplI GAGNNNNNCTC 2 cut(s) 349, 381
BpmI CTGGAG 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 374
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bse1I ACTGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 328
BseGI GGATG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 328
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 2 cut(s) 113, 126
Bsh1236I CGCG 1 cut(s) 49
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 211
BspFNI CGCG 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 45
BsrDI GCAATG 1 cut(s) 328
BsrI ACTGG 1 cut(s) 254
Bst6I CTCTTC 1 cut(s) 350
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstSFI CTRYAG 1 cut(s) 120
BstUI CGCG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 247
Cfr13I GGNCC 1 cut(s) 287
Csp6I GTAC 2 cut(s) 260, 313
CviAII CATG 2 cut(s) 316, 405
CviJI RGCY 6 cut(s) 10, 44, 70, 116, 153, 160
CviKI_1 RGCY 6 cut(s) 10, 44, 70, 116, 153, 160
CviQI GTAC 2 cut(s) 260, 313
DdeI CTNAG 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 216
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 2 cut(s) 319, 408
FaiI YATR 9 cut(s) 55, 57, 63, 132, 309, 317, 350, 401, 406
FatI CATG 2 cut(s) 315, 404
FauNDI CATATG 1 cut(s) 55
FokI GGATG 1 cut(s) 50
FspBI CTAG 3 cut(s) 71, 161, 179
GsuI CTGGAG 1 cut(s) 271
Hin1II CATG 2 cut(s) 319, 408
HinfI GANTC 2 cut(s) 240, 295
HphI GGTGA 2 cut(s) 29, 151
Hpy166II GTNNAC 1 cut(s) 329
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 1 cut(s) 329
HpyAV CCTTC 2 cut(s) 178, 194
HpyCH4IV ACGT 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 191, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 262
Hsp92II CATG 2 cut(s) 319, 408
LmnI GCTCC 2 cut(s) 49, 113
LpnPI CCDG 2 cut(s) 227, 235
MaeI CTAG 3 cut(s) 71, 161, 179
MaeII ACGT 1 cut(s) 262
MboII GAAGA 5 cut(s) 88, 184, 209, 337, 386
MluCI AATT 4 cut(s) 88, 126, 209, 387
MnlI CCTC 6 cut(s) 28, 91, 94, 104, 351, 375
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 1 cut(s) 122
NdeI CATATG 1 cut(s) 55
NlaIII CATG 2 cut(s) 319, 408
NlaIV GGNNCC 1 cut(s) 45
PfeI GAWTC 2 cut(s) 240, 295
PsiI TTATAA 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 287
RsaI GTAC 2 cut(s) 261, 314
RsaNI GTAC 2 cut(s) 260, 313
Sau96I GGNCC 1 cut(s) 287
SetI ASST 8 cut(s) 12, 72, 105, 118, 162, 189, 265, 367
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 353
SmoI CTYRAG 1 cut(s) 353
Sse9I AATT 4 cut(s) 88, 126, 209, 387
SsiI CCGC 1 cut(s) 47
SspMI CTAG 3 cut(s) 71, 161, 179
TaiI ACGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 394
TasI AATT 4 cut(s) 88, 126, 209, 387
TatI WGTACW 1 cut(s) 312
TfiI GAWTC 2 cut(s) 240, 295
TscAI CASTG 1 cut(s) 254
TspDTI ATGAA 4 cut(s) 17, 78, 239, 337
TspRI CASTG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 1 cut(s) 209
XspI CTAG 3 cut(s) 71, 161, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.