Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Reverse (-)

30666462 .. 30667247

Gene Structure 786 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49119

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGTCTACCACTATAGTATGTCTATTACTCACGACAATAGTATGGCAAAGTTTTGACTCTCCAACTGATACTATTTTGCCAAAACAGCATTTGAAAGCAGGGGCATTGCTGTACTCTGCTAAATCCAAAACTAATAGCTCAACTGGCATTTTTCGTCTCAGTATGCAAACTGATGGAAACCTTGTTCAGTTCCCGGCATCTGCCCCGACATCTACTCCGTATGCTTACTATACATCTAATACACCAGGAAGTGGAAACAATGTGACACTAAACTTGGATGTTGATGGCCATCTCTACTTACTCAACAACACTGGTTTCACTATACATAATTTTACGAATGGAGCTATTGATGAAGGCAAATCTTATCTTGTGAGACTTGATGTAGATGGAATTCTTCGCTTGTATTCGTATAGTTTGAAGAACAATGGAAATTGGTCAGTTGAGTGGTCATCTTCAAGAAATAAGTGTGTCCCTTTTGGTCTATGCGGATTTAATAGTTACTGTGTCACAAAGGATTTGGAAGCAGAATGCAAATGCCTTCCAGGATTTGAGTTTATCACCCCGGGGGATCAGACTTCAGGCTGTGGGAGGAATATGGTTGCAAATTTTTGTAAGTCAGAGAATGAAAACTTCACATACATCATGGAAGAATTGCCCTACACAAGATGGGAAAATGTTGCATACATGACTTGGTCATCATCAGACAAAGAAGAATGCAACAAGGCCTGCTTGGAGGATTGCAACTGTGAAGCAGCAATTTTCACAGATGGAAGCTGCAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

261

Amino Acids

28.95

Weight (kDa)

5.01

Isoelectric Point (pI)

36.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	119 - 184	6.9e-09	S-locus glycoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	1 cut(s)	486
AclWI	GGATC	1 cut(s)	576
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	2 cut(s)	390, 604
AcuI	CTGAAG	1 cut(s)	561
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	94, 418, 456
AjnI	CCWGG	2 cut(s)	244, 541
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	3 cut(s)	138, 344, 774
AluI	AGCT	3 cut(s)	138, 344, 774
Alw26I	GTCTC	2 cut(s)	161, 367
AlwI	GGATC	1 cut(s)	576
Ama87I	CYCGRG	1 cut(s)	562
AoxI	GGCC	2 cut(s)	286, 723
ApeKI	GCWGC	2 cut(s)	752, 774
ApoI	RAATTY	2 cut(s)	390, 604
AsuC2I	CCSGG	3 cut(s)	194, 563, 564
AsuHPI	GGTGA	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	288
BbvI	GCAGC	2 cut(s)	761, 764
BccI	CCATC	6 cut(s)	167, 278, 297, 380, 660, 761
BciT130I	CCWGG	2 cut(s)	246, 543
BcnI	CCSGG	3 cut(s)	194, 563, 564
BcoDI	GTCTC	2 cut(s)	161, 367
BfmI	CTRYAG	2 cut(s)	12, 775
BisI	GCNGC	2 cut(s)	753, 775
BlsI	GCNGC	2 cut(s)	754, 776
Bme1390I	CCNGG	5 cut(s)	194, 246, 543, 563, 564
BmeT110I	CYCGRG	1 cut(s)	562
BmrFI	CCNGG	5 cut(s)	194, 246, 543, 563, 564
BmsI	GCATC	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	194, 563, 564
BsaBI	GATNNNNATC	1 cut(s)	288
BsaJI	CCNNGG	3 cut(s)	561, 562, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	199, 229
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	148, 316
Bse3DI	GCAATG	1 cut(s)	104
Bse8I	GATNNNNATC	1 cut(s)	288
BseBI	CCWGG	2 cut(s)	246, 543
BseDI	CCNNGG	3 cut(s)	561, 562, 563
BseGI	GGATG	1 cut(s)	283
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	104
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	2 cut(s)	148, 316
BseXI	GCAGC	2 cut(s)	761, 764
BshFI	GGCC	2 cut(s)	288, 725
BsiHKCI	CYCGRG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	194, 563
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	161, 367
BsmBI	CGTCTC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	2 cut(s)	533, 719
BsnI	GGCC	2 cut(s)	288, 725
BsoBI	CYCGRG	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	1 cut(s)	486
BspANI	GGCC	2 cut(s)	288, 725
BspCNI	CTCAG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	779
BspPI	GGATC	1 cut(s)	576
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	148, 316
BssECI	CCNNGG	3 cut(s)	561, 562, 563
BssMI	GATC	1 cut(s)	568
Bst2UI	CCWGG	2 cut(s)	246, 543
Bst4CI	ACNGT	2 cut(s)	503, 746
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	2 cut(s)	161, 367
BstMBI	GATC	1 cut(s)	568
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 144
BstNI	CCWGG	2 cut(s)	246, 543
BstSCI	CCNGG	5 cut(s)	192, 244, 541, 561, 562
BstSFI	CTRYAG	2 cut(s)	12, 775
BstV1I	GCAGC	2 cut(s)	761, 764
BsuRI	GGCC	2 cut(s)	288, 725
BtsCI	GGATG	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	727
Cfr9I	CCCGGG	1 cut(s)	562
Csp6I	GTAC	1 cut(s)	112
CviAII	CATG	2 cut(s)	643, 685
CviJI	RGCY	6 cut(s)	138, 288, 344, 582, 725, 774
CviKI_1	RGCY	6 cut(s)	138, 288, 344, 582, 725, 774
CviQI	GTAC	1 cut(s)	112
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	561
Eco88I	CYCGRG	1 cut(s)	562
EcoRI	GAATTC	1 cut(s)	390
EcoRII	CCWGG	2 cut(s)	244, 541
Esp3I	CGTCTC	1 cut(s)	161
FaeI	CATG	2 cut(s)	646, 688
FalI	AAGNNNNNCTT	2 cut(s)	713, 745
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	2 cut(s)	642, 684
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	753, 775
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	753, 775
GluI	GCNGC	2 cut(s)	753, 775
HaeIII	GGCC	2 cut(s)	288, 725
HapII	CCGG	2 cut(s)	194, 563
Hin1II	CATG	2 cut(s)	646, 688
HinfI	GANTC	1 cut(s)	56
HpaII	CCGG	2 cut(s)	194, 563
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	573, 619, 703
Hpy188III	TCNNGA	2 cut(s)	31, 456
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	347, 548
HpyCH4III	ACNGT	2 cut(s)	503, 746
HpyCH4V	TGCA	7 cut(s)	166, 531, 602, 680, 717, 741, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 144
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	2 cut(s)	646, 688
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	761, 764
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	3 cut(s)	262, 497, 505
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	5 cut(s)	386, 430, 444, 659, 722
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	6 cut(s)	328, 390, 430, 604, 650, 756
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	2 cut(s)	582, 727
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	1 cut(s)	492
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	2 cut(s)	194, 563
MspR9I	CCNGG	5 cut(s)	194, 246, 543, 563, 564
Mva1269I	GAATGC	2 cut(s)	533, 719
MvaI	CCWGG	2 cut(s)	246, 543
MwoI	GCNNNNNNNGC	2 cut(s)	85, 144
NciI	CCSGG	3 cut(s)	194, 563, 564
NdeII	GATC	1 cut(s)	568
NlaIII	CATG	2 cut(s)	646, 688
NmuCI	GTSAC	2 cut(s)	262, 505
PceI	AGGCCT	1 cut(s)	725
PctI	GAATGC	2 cut(s)	533, 719
PflFI	GACNNNGTC	1 cut(s)	691
PflMI	CCANNNNNTGG	1 cut(s)	251
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	754, 776
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	244, 541
PspGI	CCWGG	2 cut(s)	244, 541
PstI	CTGCAG	1 cut(s)	779
PsyI	GACNNNGTC	1 cut(s)	691
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	753, 775
Sau3AI	GATC	1 cut(s)	568
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	5 cut(s)	194, 246, 543, 563, 564
SetI	ASST	4 cut(s)	140, 183, 346, 776
SfaNI	GCATC	1 cut(s)	206
SfcI	CTRYAG	2 cut(s)	12, 775
SmaI	CCCGGG	1 cut(s)	564
Sse9I	AATT	6 cut(s)	328, 390, 430, 604, 650, 756
SseBI	AGGCCT	1 cut(s)	725
SsiI	CCGC	1 cut(s)	486
StuI	AGGCCT	1 cut(s)	725
StyD4I	CCNGG	5 cut(s)	192, 244, 541, 561, 562
TaaI	ACNGT	2 cut(s)	503, 746
TasI	AATT	6 cut(s)	328, 390, 430, 604, 650, 756
TatI	WGTACW	1 cut(s)	111
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	2 cut(s)	262, 505
TseI	GCWGC	2 cut(s)	752, 774
Tsp45I	GTSAC	2 cut(s)	262, 505
TspDTI	ATGAA	2 cut(s)	366, 639
TspGWI	ACGGA	1 cut(s)	207
TspMI	CCCGGG	1 cut(s)	562
TspRI	CASTG	1 cut(s)	316
Tth111I	GACNNNGTC	1 cut(s)	691
Van91I	CCANNNNNTGG	1 cut(s)	251
XapI	RAATTY	2 cut(s)	390, 604
XmaI	CCCGGG	1 cut(s)	562
XmiI	GTMKAC	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.