Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8003212.1

Orthogroup ID

OG0000479

Physical Location & Seq

Genomic Coordinates Forward (+)

3 .. 528

Gene Structure 526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8003212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 526 bp

atgagcaatggttcacttgcagatattctcttcacacctgagaggaaacctcattgggaagaaagaatgggaattgctcgaaacatagcacgagggtttctttatctgcatgaagagtgtgatacacagatcatccactgtgacataaagcctcagaacatactgatggatgagtacatgtgccccaaaatctccgattttggtttggcaaagctgcttcagcaagaccagactagaaccactacaggctttagagggactaaagggtatgttgcgcctgaatggcataggaaaattcctataacagttaaagcagatgtttatagctttggaattgtgctgttggagattgtgtgctgtcgaaggaatgtggactggagtcttcctgaggaggaagctatcttggatgaattggtctaccattactttgagagtggtgagctcggtaaattgcttggggatgaagagataaacagaaggcaatttgaaagggtgattaaagtgggactttggtgcatccaggatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

175

Amino Acids

20.38

Weight (kDa)

5.29

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000479)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23370 FvH4_1g23380
malus_domestica	MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica	Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis	pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis	RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata	RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora	Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii	Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa	Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha	Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana	Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	488
AjnI	CCWGG	1 cut(s)	519
AluBI	AGCT	4 cut(s)	214, 327, 398, 442
AluI	AGCT	4 cut(s)	214, 327, 398, 442
Alw21I	GWGCWC	1 cut(s)	444
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	294
AspLEI	GCGC	1 cut(s)	277
AsuHPI	GGTGA	2 cut(s)	449, 505
AxyI	CCTNAGG	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	185
BanII	GRGCYC	1 cut(s)	444
BauI	CACGAG	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	521
BfaI	CTAG	1 cut(s)	234
BfmI	CTRYAG	1 cut(s)	243
BglI	GCCNNNNNGGC	1 cut(s)	283
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
Bme1390I	CCNGG	1 cut(s)	521
BmrFI	CCNGG	1 cut(s)	521
BoxI	GACNNNNGTC	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	34, 66
BpmI	CTGGAG	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	338, 368
Bse1I	ACTGG	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	13
BseBI	CCWGG	1 cut(s)	521
BseGI	GGATG	5 cut(s)	132, 175, 412, 466, 516
BseMI	GCAATG	1 cut(s)	13
BseMII	CTCAG	3 cut(s)	30, 167, 378
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	404
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	444
BslFI	GGGAC	2 cut(s)	271, 519
BsmFI	GGGAC	2 cut(s)	271, 519
Bsp1286I	GDGCHC	2 cut(s)	185, 444
Bsp143I	GATC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	31, 166, 379
BsrDI	GCAATG	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	380
BssMI	GATC	1 cut(s)	129
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	2 cut(s)	140, 307
Bst6I	CTCTTC	3 cut(s)	35, 108, 459
BstDEI	CTNAG	3 cut(s)	39, 153, 387
BstF5I	GGATG	5 cut(s)	132, 175, 412, 466, 516
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 283
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	181
BstPAI	GACNNNNGTC	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	519
BstSFI	CTRYAG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	201
BstV2I	GAAGAC	1 cut(s)	374
Bsu36I	CCTNAGG	1 cut(s)	387
BtsCI	GGATG	5 cut(s)	132, 175, 412, 466, 516
BtsIMutI	CAGTG	1 cut(s)	136
CfoI	GCGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	110, 178
CviJI	RGCY	6 cut(s)	151, 214, 249, 327, 398, 442
CviKI_1	RGCY	6 cut(s)	151, 214, 249, 327, 398, 442
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	39, 153, 387
DpnI	GATC	1 cut(s)	131
DpnII	GATC	1 cut(s)	129
Eam1104I	CTCTTC	3 cut(s)	35, 108, 459
EarI	CTCTTC	3 cut(s)	35, 108, 459
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	444
Eco53kI	GAGCTC	1 cut(s)	442
Eco57I	CTGAAG	1 cut(s)	203
Eco81I	CCTNAGG	1 cut(s)	387
EcoICRI	GAGCTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	444
FaeI	CATG	2 cut(s)	113, 181
FaiI	YATR	9 cut(s)	86, 111, 146, 161, 179, 270, 288, 302, 324
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	2 cut(s)	271, 519
FatI	CATG	2 cut(s)	109, 177
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	5 cut(s)	119, 182, 419, 473, 503
FriOI	GRGCYC	1 cut(s)	444
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	1 cut(s)	215
GsuI	CTGGAG	1 cut(s)	397
HhaI	GCGC	1 cut(s)	277
Hin1II	CATG	2 cut(s)	113, 181
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	1 cut(s)	379
HphI	GGTGA	2 cut(s)	449, 505
Hpy166II	GTNNAC	3 cut(s)	14, 373, 418
Hpy188I	TCNGA	2 cut(s)	156, 196
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	3 cut(s)	14, 373, 418
HpyAV	CCTTC	2 cut(s)	357, 471
HpyCH4III	ACNGT	2 cut(s)	140, 307
HpyCH4V	TGCA	3 cut(s)	20, 109, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 283
HpyF3I	CTNAG	3 cut(s)	39, 153, 387
Hsp92II	CATG	2 cut(s)	113, 181
HspAI	GCGC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	129
LpnPI	CCDG	7 cut(s)	51, 231, 242, 291, 361, 399, 506
Lsp1109I	GCAGC	1 cut(s)	201
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	131
MboI	GATC	1 cut(s)	129
MboII	GAAGA	5 cut(s)	22, 71, 125, 374, 476
MhlI	GDGCHC	2 cut(s)	185, 444
MluCI	AATT	6 cut(s)	72, 294, 333, 410, 449, 482
MlyI	GAGTC	1 cut(s)	388
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	7 cut(s)	36, 60, 86, 162, 248, 382, 385
MseI	TTAA	2 cut(s)	309, 498
MslI	CAYNNNNRTG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	521
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	2 cut(s)	220, 283
NdeII	GATC	1 cut(s)	129
NlaIII	CATG	2 cut(s)	113, 181
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	181
PciI	ACATGT	1 cut(s)	177
PfoI	TCCNGGA	1 cut(s)	519
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	1 cut(s)	387
PpsI	GAGTC	1 cut(s)	387
PscI	ACATGT	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	164
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	309, 498
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	129
SchI	GAGTC	1 cut(s)	388
ScrFI	CCNGG	1 cut(s)	521
SduI	GDGCHC	2 cut(s)	185, 444
SetI	ASST	6 cut(s)	40, 52, 216, 329, 400, 444
SfcI	CTRYAG	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	164
Sse9I	AATT	6 cut(s)	72, 294, 333, 410, 449, 482
SspMI	CTAG	1 cut(s)	234
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	519
TaaI	ACNGT	2 cut(s)	140, 307
TaqI	TCGA	2 cut(s)	79, 361
TasI	AATT	6 cut(s)	72, 294, 333, 410, 449, 482
TatI	WGTACW	1 cut(s)	174
Tru1I	TTAA	2 cut(s)	309, 498
Tru9I	TTAA	2 cut(s)	309, 498
TscAI	CASTG	1 cut(s)	143
TseFI	GTSAC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	126, 423, 477
TspRI	CASTG	1 cut(s)	143
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	417
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.