Rh2DG301200

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
35818098 .. 35818535
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG301200.1

Sequence Viewer

Length: 438 bp
ATGGGGGAGGCGATTGATTGTAGATGTCTTCTTGGATTTGAATCTGTCAACCCGGGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCATTGGAGATGTTTGCAGATCGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGCAGAACCTGGTTGGAGGATGCGCCATATATGGTTCTGTCATCTTCAGGTAAAGAAGATTGCAAACAGGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCAGTTCTTGAAGATGCAAGCTGTAGAAAGCAGAGGCTTCCTTTGAGATATGGAAGAAGATATGAGGGTACTTCGAAAGTAGTTTTCCTCAAGGAGGTTGTCATGTCTTCTGCAGCTCCAGCTCCAGATGCGGTTGTTCCAAAAGGAAGCAGGAAAAATGGTAGAATTGTATTCTTGATTATTGGCTTGTGA

Protein Analysis

145

Amino Acids

15.97

Weight (kDa)

8.07

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 377
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 2 cut(s) 51, 177
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 3 cut(s) 41, 235, 257
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 3 cut(s) 267, 362, 368
AluI AGCT 3 cut(s) 267, 362, 368
AlwNI CAGNNNCTG 1 cut(s) 156
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 1 cut(s) 216
ApeKI GCWGC 2 cut(s) 245, 359
ApoI RAATTY 1 cut(s) 82
Asp700I GAANNNNTTC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 172
AsuC2I CCSGG 2 cut(s) 53, 54
AsuII TTCGAA 1 cut(s) 320
AvaI CYCGRG 1 cut(s) 52
BbsI GAAGAC 2 cut(s) 20, 345
BbvI GCAGC 2 cut(s) 232, 371
BciT130I CCWGG 1 cut(s) 157
BcnI CCSGG 2 cut(s) 53, 54
BfmI CTRYAG 3 cut(s) 246, 268, 357
BisI GCNGC 2 cut(s) 246, 360
BlsI GCNGC 2 cut(s) 247, 361
Bme1390I CCNGG 3 cut(s) 53, 54, 157
BmeT110I CYCGRG 1 cut(s) 52
BmrFI CCNGG 3 cut(s) 53, 54, 157
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 3 cut(s) 157, 250, 364
BmuI ACTGGG 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 20, 345
BpmI CTGGAG 2 cut(s) 348, 354
Bpu14I TTCGAA 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 2 cut(s) 53, 54
BsaBI GATNNNNATC 1 cut(s) 40
BsaJI CCNNGG 1 cut(s) 52
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 40
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 150
BseXI GCAGC 2 cut(s) 232, 371
BshFI GGCC 1 cut(s) 218
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 340
BsnI GGCC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 52
Bsp119I TTCGAA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 107
BspACI CCGC 1 cut(s) 377
BspANI GGCC 1 cut(s) 218
BspMAI CTGCAG 2 cut(s) 250, 361
BspT104I TTCGAA 1 cut(s) 320
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 1 cut(s) 107
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 239
BstBI TTCGAA 1 cut(s) 320
BstC8I GCNNGC 1 cut(s) 265
BstENI CCTNNNNNAGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 172
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 110
BstMBI GATC 1 cut(s) 107
BstMWI GCNNNNNNNGC 2 cut(s) 365, 374
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 3 cut(s) 51, 52, 155
BstSFI CTRYAG 3 cut(s) 246, 268, 357
BstV1I GCAGC 2 cut(s) 232, 371
BstV2I GAAGAC 2 cut(s) 20, 345
BsuRI GGCC 1 cut(s) 218
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 265
CaiI CAGNNNCTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 172
Cfr9I CCCGGG 1 cut(s) 52
CsiI ACCWGGT 1 cut(s) 155
Csp6I GTAC 1 cut(s) 315
CviAII CATG 2 cut(s) 136, 349
CviJI RGCY 7 cut(s) 218, 245, 267, 283, 362, 368, 432
CviKI_1 RGCY 7 cut(s) 218, 245, 267, 283, 362, 368, 432
CviQI GTAC 1 cut(s) 315
DpnI GATC 1 cut(s) 109
DpnII GATC 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 218
Eco57I CTGAAG 2 cut(s) 51, 177
Eco88I CYCGRG 1 cut(s) 52
EcoNI CCTNNNNNAGG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 155
FaeI CATG 2 cut(s) 139, 352
FaiI YATR 7 cut(s) 137, 175, 177, 179, 297, 309, 350
FatI CATG 2 cut(s) 135, 348
Fnu4HI GCNGC 2 cut(s) 246, 360
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 246, 360
GlaI GCGC 1 cut(s) 171
GluI GCNGC 2 cut(s) 246, 360
GsuI CTGGAG 2 cut(s) 348, 354
HaeIII GGCC 1 cut(s) 218
HapII CCGG 1 cut(s) 53
HhaI GCGC 1 cut(s) 172
Hin1II CATG 2 cut(s) 139, 352
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 1 cut(s) 41
HpaII CCGG 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 254, 371, 421
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 7 cut(s) 105, 126, 139, 210, 248, 263, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 374
Hsp92II CATG 2 cut(s) 139, 352
HspAI GCGC 1 cut(s) 170
Kzo9I GATC 1 cut(s) 107
LmnI GCTCC 2 cut(s) 367, 373
Lsp1109I GCAGC 2 cut(s) 232, 371
LweI GCATC 3 cut(s) 157, 250, 364
MabI ACCWGGT 1 cut(s) 155
MalI GATC 1 cut(s) 109
MboI GATC 1 cut(s) 107
MboII GAAGA 9 cut(s) 20, 78, 124, 183, 215, 269, 312, 315, 345
MluCI AATT 4 cut(s) 82, 115, 121, 411
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 6 cut(s) 157, 220, 273, 304, 334, 344
MroXI GAANNNNTTC 1 cut(s) 85
MspI CCGG 1 cut(s) 53
MspR9I CCNGG 3 cut(s) 53, 54, 157
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 2 cut(s) 365, 374
NciI CCSGG 2 cut(s) 53, 54
NdeII GATC 1 cut(s) 107
NlaIII CATG 2 cut(s) 139, 352
NspV TTCGAA 1 cut(s) 320
PceI AGGCCT 1 cut(s) 218
PdmI GAANNNNTTC 1 cut(s) 85
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 247, 361
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PstI CTGCAG 2 cut(s) 250, 361
PstNI CAGNNNCTG 1 cut(s) 156
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SatI GCNGC 2 cut(s) 246, 360
Sau3AI GATC 1 cut(s) 107
ScrFI CCNGG 3 cut(s) 53, 54, 157
SetI ASST 7 cut(s) 73, 158, 199, 269, 345, 364, 370
SexAI ACCWGGT 1 cut(s) 155
SfaNI GCATC 3 cut(s) 157, 250, 364
SfcI CTRYAG 3 cut(s) 246, 268, 357
SfuI TTCGAA 1 cut(s) 320
SmaI CCCGGG 1 cut(s) 54
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 4 cut(s) 82, 115, 121, 411
SseBI AGGCCT 1 cut(s) 218
SsiI CCGC 1 cut(s) 377
StuI AGGCCT 1 cut(s) 218
StyD4I CCNGG 3 cut(s) 51, 52, 155
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 2 cut(s) 110, 320
TasI AATT 4 cut(s) 82, 115, 121, 411
TfiI GAWTC 1 cut(s) 41
TseI GCWGC 2 cut(s) 245, 359
TspMI CCCGGG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 338
XapI RAATTY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XmaI CCCGGG 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.