Rh2DG281900

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
32080046 .. 32089241
9196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG281900.1

Sequence Viewer

Length: 1461 bp
ATGGCTTTTTTAGTTTGTTATCTTCTTGCCTTTGCGTTCTTCAATTATGCTGAAGCACAACAACAACAGTCTAATATAAGCAGGGGCTCTGCTTTAACACCCACTACCGACTCCTTATGGTTGTCTCGTTCCGGTATGTATGCCTTTGGCTTTTACAAGCAAGGCAATGGCTTTGCTGTGGGGATAGTTGTTGCTGGAGTCCCCCAAAAGACTGTGGTGTGGACTGCAGATCGAGATGGTGGACTAGTCTCAGACAATGCCACCTTGTTCTTCACAAGTGATGGGATTGCCTTGCAGTCGACAGAAGGGCGAAGTTTGGTGGTTGCTTCTCCAATGCCTATTTCTTCTGCTTCGATGCTTGATTCGGGCATTTTCCGTCTTGCTATGCAAGTTGACGGAAACCTTGTCCAGTACCCTGTGGACACTCCACCAGAAGCTCAATATTCGTACTATACATCTTTCACAAATGGAGCAGGATCAAATGTGTCACTAAATTTTGGTGTTGATGGCCGTCTCTACTTGCTCAATGATACTGGTGGAAATTTAAAGAATATCACCGAAGGAGGTCTTCCCGTTAGAGGAAAATCTTATCTTATGAGAATTGATGCAGATGGGATTCTTCGTCTGTATTCGTATGATCTGAAACAGAAAGGAAATTGGTCCACTAAATGGTCATCTTCACCTGATAGATGTAAACCTAAAGGTATATGCGGATATAATAGCTACTGTGTCACAATGGGGGCGGCGATTGATTGTAGATGTCTTCCTGGATTTGAATCTATCAACCCGGGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCGTTGGAGATGTTTGCAGATCGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGAAGAACCTGGTTGGAGGATGCGCCATATATGGTTCTGTCACCTTCAGGTAAAGAAGATTGCAAACAAGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCAGTTTTTGACGGTTCAAGCTGTAGTAAGCAGAGGCTTCCTTTGAGATATGGAAGAAGAGATGAGGGTACTTCGAACGTAGTTTTCCTCAAGGAGGTTGTCATGTCTTCTGCAGCTCCAGCTCCAGATGCGGTTGTTCCAAAAGGAAGCAGGAAAAATGGTAGAATTGTATTCTTGATTATTGGCGTGTCATTTACTGCTTTGGGGTCCATTTTGTTGGTGATTTCTGTAATTGTATTATGGAAACACAATGTCTGGGCATATAAAAGAATGAATGAGCTCAATGGTGATGCTGAGTGGAATGAGGATGTGGCTCCGCGACCATATGCTTATGAAGAGCTAGAAAAGATGACTAATAATTTCAATGAAGAGGATGAGCCGTCACTCCGTCCTTCTATGAAGAAGGTTCTGCTTATGTTGGAAGGGACTGTAGAAATCCCAGTTCCTCCTAGTCCAAATTCATTTCTCAGTACCATCTAG

Protein Analysis

486

Amino Acids

53.24

Weight (kDa)

5.42

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 199 - 260 1.4e-06 S-locus glycoprotein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 669
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 1300
AciI CCGC 4 cut(s) 711, 743, 1112, 1298
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 508
AcsI RAATTY 4 cut(s) 493, 541, 817, 1438
AcuI CTGAAG 3 cut(s) 72, 786, 912
AfaI GTAC 4 cut(s) 413, 449, 1051, 1453
AfiI CCNNNNNNNGG 3 cut(s) 578, 669, 1075
AgsI TTSAA 5 cut(s) 43, 776, 970, 999, 1345
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 2 cut(s) 766, 890
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 7 cut(s) 437, 723, 1002, 1097, 1103, 1261, 1321
AluI AGCT 7 cut(s) 437, 723, 1002, 1097, 1103, 1261, 1321
Alw21I GWGCWC 1 cut(s) 1263
Alw26I GTCTC 3 cut(s) 129, 253, 518
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 787
AoxI GGCC 1 cut(s) 508
ApeKI GCWGC 2 cut(s) 980, 1094
ApoI RAATTY 4 cut(s) 493, 541, 817, 1438
Asp700I GAANNNNTTC 1 cut(s) 820
AspLEI GCGC 1 cut(s) 907
AspS9I GGNCC 2 cut(s) 660, 1188
AsuC2I CCSGG 2 cut(s) 788, 789
AsuHPI GGTGA 5 cut(s) 547, 672, 915, 1213, 1280
AsuII TTCGAA 1 cut(s) 1055
AvaI CYCGRG 1 cut(s) 787
AvaII GGWCC 2 cut(s) 660, 1188
BanII GRGCYC 2 cut(s) 89, 1263
BbsI GAAGAC 3 cut(s) 560, 755, 1080
Bbv12I GWGCWC 1 cut(s) 1263
BbvI GCAGC 2 cut(s) 967, 1106
BccI CCATC 4 cut(s) 230, 275, 500, 605
BceAI ACGGC 2 cut(s) 495, 1345
BciT130I CCWGG 2 cut(s) 768, 892
BcnI CCSGG 2 cut(s) 788, 789
BcoDI GTCTC 3 cut(s) 129, 253, 518
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 4 cut(s) 245, 1322, 1431, 1459
BfmI CTRYAG 5 cut(s) 225, 981, 1003, 1092, 1410
BisI GCNGC 3 cut(s) 744, 981, 1095
BlsI GCNGC 3 cut(s) 745, 982, 1096
Bme1390I CCNGG 4 cut(s) 768, 788, 789, 892
Bme18I GGWCC 2 cut(s) 660, 1188
BmeT110I CYCGRG 1 cut(s) 787
BmgT120I GGNCC 2 cut(s) 660, 1188
BmiI GGNNCC 2 cut(s) 1189, 1296
BmrFI CCNGG 4 cut(s) 768, 788, 789, 892
BmrI ACTGGG 2 cut(s) 890, 1415
BmsI GCATC 5 cut(s) 345, 595, 892, 1099, 1261
BmuI ACTGGG 2 cut(s) 890, 1415
BpiI GAAGAC 3 cut(s) 560, 755, 1080
BpmI CTGGAG 3 cut(s) 216, 1083, 1089
Bpu14I TTCGAA 1 cut(s) 1055
BpuEI CTTGAG 1 cut(s) 1055
BpuMI CCSGG 2 cut(s) 788, 789
BsaBI GATNNNNATC 1 cut(s) 775
BsaJI CCNNGG 1 cut(s) 787
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 3 cut(s) 578, 669, 1075
Bse1I ACTGG 4 cut(s) 409, 538, 885, 1421
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 2 cut(s) 768, 892
BseDI CCNNGG 1 cut(s) 787
BseGI GGATG 3 cut(s) 907, 1294, 1360
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 3 cut(s) 578, 669, 1075
BseMI GCAATG 1 cut(s) 172
BseMII CTCAG 2 cut(s) 264, 1266
BseNI ACTGG 4 cut(s) 409, 538, 885, 1421
BseXI GCAGC 2 cut(s) 967, 1106
Bsh1236I CGCG 1 cut(s) 1300
BshFI GGCC 1 cut(s) 510
BsiHKAI GWGCWC 1 cut(s) 1263
BsiHKCI CYCGRG 1 cut(s) 787
BsiSI CCGG 2 cut(s) 132, 788
BslFI GGGAC 2 cut(s) 185, 1420
BslI CCNNNNNNNGG 3 cut(s) 578, 669, 1075
BsmAI GTCTC 3 cut(s) 129, 253, 518
BsmBI CGTCTC 1 cut(s) 518
BsmFI GGGAC 2 cut(s) 185, 1420
BsnI GGCC 1 cut(s) 510
BsoBI CYCGRG 1 cut(s) 787
Bsp119I TTCGAA 1 cut(s) 1055
Bsp1286I GDGCHC 2 cut(s) 89, 1263
Bsp143I GATC 4 cut(s) 229, 476, 637, 842
BspACI CCGC 4 cut(s) 711, 743, 1112, 1298
BspANI GGCC 1 cut(s) 510
BspCNI CTCAG 3 cut(s) 263, 1267, 1461
BspFNI CGCG 1 cut(s) 1300
BspLI GGNNCC 2 cut(s) 1189, 1296
BspMAI CTGCAG 3 cut(s) 229, 985, 1096
BspPI GGATC 1 cut(s) 484
BspQI GCTCTTC 1 cut(s) 1311
BspT104I TTCGAA 1 cut(s) 1055
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 4 cut(s) 409, 538, 885, 1421
BssECI CCNNGG 1 cut(s) 787
BssMI GATC 4 cut(s) 229, 476, 637, 842
Bst2UI CCWGG 2 cut(s) 768, 892
Bst4CI ACNGT 6 cut(s) 69, 214, 728, 974, 995, 1411
Bst6I CTCTTC 3 cut(s) 1033, 1311, 1344
BstBI TTCGAA 1 cut(s) 1055
BstDEI CTNAG 3 cut(s) 250, 1275, 1448
BstENI CCTNNNNNAGG 1 cut(s) 1073
BstF5I GGATG 3 cut(s) 907, 1294, 1360
BstFNI CGCG 1 cut(s) 1300
BstHHI GCGC 1 cut(s) 907
BstKTI GATC 4 cut(s) 232, 479, 640, 845
BstMAI GTCTC 3 cut(s) 129, 253, 518
BstMBI GATC 4 cut(s) 229, 476, 637, 842
BstMWI GCNNNNNNNGC 2 cut(s) 1100, 1109
BstNI CCWGG 2 cut(s) 768, 892
BstSCI CCNGG 4 cut(s) 766, 786, 787, 890
BstSFI CTRYAG 5 cut(s) 225, 981, 1003, 1092, 1410
BstUI CGCG 1 cut(s) 1300
BstV1I GCAGC 2 cut(s) 967, 1106
BstV2I GAAGAC 3 cut(s) 560, 755, 1080
BstXI CCANNNNNNTGG 1 cut(s) 1198
BsuRI GGCC 1 cut(s) 510
BtsCI GGATG 3 cut(s) 907, 1294, 1360
CfoI GCGC 1 cut(s) 907
Cfr13I GGNCC 2 cut(s) 660, 1188
Cfr9I CCCGGG 1 cut(s) 787
CsiI ACCWGGT 1 cut(s) 890
Csp6I GTAC 4 cut(s) 412, 448, 1050, 1452
CviAII CATG 2 cut(s) 871, 1084
CviQI GTAC 4 cut(s) 412, 448, 1050, 1452
DdeI CTNAG 3 cut(s) 250, 1275, 1448
DpnI GATC 4 cut(s) 231, 478, 639, 844
DpnII GATC 4 cut(s) 229, 476, 637, 842
DraI TTTAAA 1 cut(s) 546
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 3 cut(s) 1033, 1311, 1344
EarI CTCTTC 3 cut(s) 1033, 1311, 1344
Ecl136II GAGCTC 1 cut(s) 1261
Eco24I GRGCYC 2 cut(s) 89, 1263
Eco47I GGWCC 2 cut(s) 660, 1188
Eco53kI GAGCTC 1 cut(s) 1261
Eco57I CTGAAG 3 cut(s) 72, 786, 912
Eco88I CYCGRG 1 cut(s) 787
EcoICRI GAGCTC 1 cut(s) 1261
EcoNI CCTNNNNNAGG 1 cut(s) 1073
EcoRII CCWGG 2 cut(s) 766, 890
EcoT38I GRGCYC 2 cut(s) 89, 1263
Esp3I CGTCTC 1 cut(s) 518
FaeI CATG 2 cut(s) 874, 1087
FalI AAGNNNNNCTT 2 cut(s) 552, 584
FaqI GGGAC 2 cut(s) 185, 1420
FatI CATG 2 cut(s) 870, 1083
FauNDI CATATG 1 cut(s) 1306
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 744, 981, 1095
FokI GGATG 3 cut(s) 914, 1301, 1367
FriOI GRGCYC 2 cut(s) 89, 1263
Fsp4HI GCNGC 3 cut(s) 744, 981, 1095
FspBI CTAG 4 cut(s) 245, 1322, 1431, 1459
GlaI GCGC 1 cut(s) 906
GluI GCNGC 3 cut(s) 744, 981, 1095
GsuI CTGGAG 3 cut(s) 216, 1083, 1089
HaeIII GGCC 1 cut(s) 510
HapII CCGG 2 cut(s) 132, 788
HhaI GCGC 1 cut(s) 907
Hin1II CATG 2 cut(s) 874, 1087
Hin6I GCGC 1 cut(s) 905
HinP1I GCGC 1 cut(s) 905
HincII GTYRAC 2 cut(s) 300, 394
HindII GTYRAC 2 cut(s) 300, 394
HinfI GANTC 5 cut(s) 110, 198, 362, 616, 776
HpaII CCGG 2 cut(s) 132, 788
HphI GGTGA 5 cut(s) 547, 672, 915, 1213, 1280
Hpy166II GTNNAC 7 cut(s) 222, 242, 300, 394, 421, 663, 695
Hpy188I TCNGA 3 cut(s) 253, 642, 798
Hpy188III TCNNGA 3 cut(s) 233, 1106, 1156
Hpy8I GTNNAC 7 cut(s) 222, 242, 300, 394, 421, 663, 695
HpyAV CCTTC 6 cut(s) 299, 554, 936, 1378, 1383, 1397
HpyCH4III ACNGT 6 cut(s) 69, 214, 728, 974, 995, 1411
HpyCH4IV ACGT 1 cut(s) 1059
HpyF10VI GCNNNNNNNGC 2 cut(s) 1100, 1109
HpyF3I CTNAG 3 cut(s) 250, 1275, 1448
HpySE526I ACGT 1 cut(s) 1059
Hsp92II CATG 2 cut(s) 874, 1087
HspAI GCGC 1 cut(s) 905
Kzo9I GATC 4 cut(s) 229, 476, 637, 842
LguI GCTCTTC 1 cut(s) 1311
LmnI GCTCC 4 cut(s) 470, 1102, 1108, 1300
Lsp1109I GCAGC 2 cut(s) 967, 1106
LweI GCATC 5 cut(s) 345, 595, 892, 1099, 1261
MabI ACCWGGT 1 cut(s) 890
MaeI CTAG 4 cut(s) 245, 1322, 1431, 1459
MaeII ACGT 1 cut(s) 1059
MaeIII GTNAC 4 cut(s) 486, 730, 921, 1362
MalI GATC 4 cut(s) 231, 478, 639, 844
MboI GATC 4 cut(s) 229, 476, 637, 842
MhlI GDGCHC 2 cut(s) 89, 1263
MlyI GAGTC 2 cut(s) 104, 207
MmeI TCCRAC 3 cut(s) 808, 876, 1380
MroXI GAANNNNTTC 1 cut(s) 820
MseI TTAA 2 cut(s) 95, 545
MspI CCGG 2 cut(s) 132, 788
MspR9I CCNGG 4 cut(s) 768, 788, 789, 892
MvaI CCWGG 2 cut(s) 768, 892
MvnI CGCG 1 cut(s) 1300
MwoI GCNNNNNNNGC 2 cut(s) 1100, 1109
NciI CCSGG 2 cut(s) 788, 789
NdeI CATATG 1 cut(s) 1306
NdeII GATC 4 cut(s) 229, 476, 637, 842
NlaIII CATG 2 cut(s) 874, 1087
NlaIV GGNNCC 2 cut(s) 1189, 1296
NmuCI GTSAC 4 cut(s) 486, 730, 921, 1362
NspV TTCGAA 1 cut(s) 1055
PciSI GCTCTTC 1 cut(s) 1311
PdmI GAANNNNTTC 1 cut(s) 820
PfeI GAWTC 3 cut(s) 362, 616, 776
PflMI CCANNNNNTGG 1 cut(s) 669
PfoI TCCNGGA 1 cut(s) 766
PkrI GCNGC 3 cut(s) 745, 982, 1096
PleI GAGTC 2 cut(s) 104, 206
PpsI GAGTC 2 cut(s) 104, 206
Psp124BI GAGCTC 1 cut(s) 1263
Psp6I CCWGG 2 cut(s) 766, 890
PspGI CCWGG 2 cut(s) 766, 890
PspN4I GGNNCC 2 cut(s) 1189, 1296
PspPI GGNCC 2 cut(s) 660, 1188
PstI CTGCAG 3 cut(s) 229, 985, 1096
RsaI GTAC 4 cut(s) 413, 449, 1051, 1453
RsaNI GTAC 4 cut(s) 412, 448, 1050, 1452
SacI GAGCTC 1 cut(s) 1263
SalI GTCGAC 1 cut(s) 298
SapI GCTCTTC 1 cut(s) 1311
SaqAI TTAA 2 cut(s) 95, 545
SatI GCNGC 3 cut(s) 744, 981, 1095
Sau3AI GATC 4 cut(s) 229, 476, 637, 842
Sau96I GGNCC 2 cut(s) 660, 1188
SchI GAGTC 2 cut(s) 104, 207
ScrFI CCNGG 4 cut(s) 768, 788, 789, 892
SduI GDGCHC 2 cut(s) 89, 1263
SexAI ACCWGGT 1 cut(s) 890
SfaNI GCATC 5 cut(s) 345, 595, 892, 1099, 1261
SfcI CTRYAG 5 cut(s) 225, 981, 1003, 1092, 1410
SfuI TTCGAA 1 cut(s) 1055
SinI GGWCC 2 cut(s) 660, 1188
SmaI CCCGGG 1 cut(s) 789
SmlI CTYRAG 1 cut(s) 1070
SmoI CTYRAG 1 cut(s) 1070
SpeI ACTAGT 1 cut(s) 244
SsiI CCGC 4 cut(s) 711, 743, 1112, 1298
SspI AATATT 1 cut(s) 443
SspMI CTAG 4 cut(s) 245, 1322, 1431, 1459
SstI GAGCTC 1 cut(s) 1263
StyD4I CCNGG 4 cut(s) 766, 786, 787, 890
TaaI ACNGT 6 cut(s) 69, 214, 728, 974, 995, 1411
TaiI ACGT 1 cut(s) 1062
TaqI TCGA 5 cut(s) 232, 299, 353, 845, 1055
TauI GCSGC 1 cut(s) 746
TfiI GAWTC 3 cut(s) 362, 616, 776
Tru1I TTAA 2 cut(s) 95, 545
Tru9I TTAA 2 cut(s) 95, 545
TseFI GTSAC 4 cut(s) 486, 730, 921, 1362
TseI GCWGC 2 cut(s) 980, 1094
Tsp45I GTSAC 4 cut(s) 486, 730, 921, 1362
TspDTI ATGAA 5 cut(s) 1268, 1329, 1362, 1394, 1431
TspGWI ACGGA 4 cut(s) 365, 411, 814, 1358
TspMI CCCGGG 1 cut(s) 787
Van91I CCANNNNNTGG 1 cut(s) 669
VpaK11BI GGWCC 2 cut(s) 660, 1188
XagI CCTNNNNNAGG 1 cut(s) 1073
XapI RAATTY 4 cut(s) 493, 541, 817, 1438
XcmI CCANNNNNNNNNTGG 1 cut(s) 877
XmaI CCCGGG 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 820
XspI CTAG 4 cut(s) 245, 1322, 1431, 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.