Rh2AG273800

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
32636498 .. 32640183
3686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG273800.1

Sequence Viewer

Length: 1380 bp
ATGGCTTTTATAGTTTGTTATCTTCTTGCCTTTGCGTTCTTCAATTATGCTGAAGCACAACAACTGCAGTCTAATATAAGCAGGGGCTCTGCTTTAACACCCACTACCAACTCCTTATGGTTGTCCAGTTCCGGTATGTATGCCTTTGGCTTTTACAAGCAAGGCAATGGCTTTGCTGTGGGGATAGTTGTTGCTGGAGTCCCCGAAAAGACTGTGGTGTGGACTGCAGATCGAGATGGTGGACTAGTCTCAAACAATGCCACCTTGTTCTTCACAAGTGATGGGATTGCCTTGCAGTCGACAGAAGGCCGAAGTTTGGTGGTTGAGTCTCCAATGCCTATTTCTTCTGCTTCGATGCTTGATTCGGGTAATTTTGTGCTGTACAATGCGAGTCGGGCAATAGTATGGCAAAGCTTCCAGTACCCAACTGATACCTTGTTGCCCACTCAACCACTGCTAGCAGGGAAGGAACTTGTGTCTGCTAAATCAGAAACTGATCACTCATCAGGTATTTTCCGTCTCGTTATGCAACGTGATGGAAACCTTGTCCAGTACCCTGTTGACACTGGACCATATGGTGGTGTTCAATATGCGTACTACGCATCTGGCACAGATCGAAAAGGGTCAAATGTGTCACTAAATTTAGGTGTTGATGGCCGTCTCTACTTGCTCAATGATACTGGTGGAAATTTAATGAATCTCACCGATGGAGGTCTTCCCACTAGAGGAAATTCTTATCTTATGAGAATTGATGCGGATGGGATTTTTCGTCTGTATTCGTATGATCTTGAACAGAAAGGAAATTGGTCCCCTGAATGGTCATCTTCAACGGATAGATGTGTCCCTAAAGGTATTTGCGGATTTAATAGTTACTGTGTAACAATGGGCTGTAGATGTCTTCCTGGATTTGAATCTGTCAACCCGAGAAATCAGACTTCAGGTTGTGAGAGAAATTCTTCCATTGGAGATGCTTGCAGATTGAAGAATTGGAATTGCAACTACACCATGCAAGAACTGGGCGGCACAGCATGGGAGGATGCGCCATATATGGTTCTGTCATCTTTAGGTACAGAAGATTGCAAACAGGCCTGTTTGGAGGATTTGAACTGTCAGGCTGCCGTTCTTCAAGGTGCAAGCTGTAAAAAACAGAGGCTTCCTTTGAGATATGGAAGAAGAGATGAGGGTACTTCGAACGTAGTTTTCCTCAAGGAGGTTGTCATGTCTCCTGCAGCTCCAGCTCCAGACGCAGTTGTTCCAAAAGGAAGCAGGAAAAATGGAACAAAAGTCTGGACTATCTCTGTCAAGGCAAGACAAAGTGATTTTCACTTCCGTCACTTTCAAGTTTCAAGTGCAGCATTTTCAACTTCGACGGAGTCTTGA

Protein Analysis

459

Amino Acids

49.94

Weight (kDa)

6.35

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 71 - 153 4e-14 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000479)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23370 FvH4_1g23380
malus_domestica MD15G1391000.v1.1 MD15G1391100.v1.1
prunus_persica Prupe.6G158300_v2.0.a1 Prupe.6G158400_v2.0.a1 Prupe.6G158700_v2.0.a1 Prupe.6G158900_v2.0.a1 Prupe.6G159000_v2.0.a1 Prupe.6G164400_v2.0.a1 Prupe.6G164900_v2.0.a1
pyrus_communis pycom15g35040 pycom15g35130 pycom15g35150
rosa_chinensis RchiOBHm_Chr2g0118321 RchiOBHm_Chr2g0118331 RchiOBHm_Chr2g0118351 RchiOBHm_Chr2g0118361 RchiOBHm_Chr2g0118371 RchiOBHm_Chr2g0118591 RchiOBHm_Chr2g0118601 RchiOBHm_Chr2g0118631 RchiOBHm_Chr2g0118641 RchiOBHm_Chr2g0118651
rosa_laevigata RLG00000018409 RLG00000018410 RLG00000018411 RLG00000018412 RLG00000018413 RLG00000018414
rosa_multiflora Rmu_co8003212.1_g000001 Rmu_co8379303.1_g000001 Rmu_co8418889.1_g000001 Rmu_sc0000373.1_g000002 Rmu_sc0000373.1_g000006 Rmu_sc0000373.1_g000013 Rmu_sc0000373.1_g000014 Rmu_sc0000373.1_g000015 Rmu_sc0000373.1_g000017 Rmu_sc0000373.1_g000018 Rmu_sc0008015.1_g000001 Rmu_sc0016207.1_g000001 Rmu_sc0017451.1_g000001
rosa_roxburghii Rroxscaffold_2G00124920 Rroxscaffold_2G00124930 Rroxscaffold_2G00124940 Rroxscaffold_2G00124960 Rroxscaffold_2G00124970 Rroxscaffold_2G00124990 Rroxscaffold_2G00125010 Rroxscaffold_2G00125600 Rroxscaffold_2G00125610 Rroxscaffold_2G00125640 Rroxscaffold_2G00125650 Rroxscaffold_2G00125670 Rroxscaffold_2G00125680
rosa_rugosa Rorug02G0217500 Rorug02G0217600 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217700 Rorug02G0217800
rosa_samantha Rh2AG273800 Rh2AG273900 Rh2AG274200 Rh2AG274300 Rh2BG285900 Rh2BG286000 Rh2BG286200 Rh2BG286300 Rh2BG286400 Rh2DG281700 Rh2DG281800 Rh2DG281900 Rh2DG282000 Rh2DG299900 Rh2DG300000 Rh2DG300100 Rh2DG300300 Rh2DG300600 Rh2DG300800 Rh2DG301200 Rh2DG301300
rosa_wichuraiana Rw2G021790 Rw2G021800 Rw2G021810 Rw2G021820 Rw2G021830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AccI GTMKAC 1 cut(s) 299
AciI CCGC 3 cut(s) 755, 858, 1020
AcoI YGGCCR 1 cut(s) 655
AcsI RAATTY 4 cut(s) 640, 688, 730, 952
AcuI CTGAAG 2 cut(s) 72, 921
AfaI GTAC 6 cut(s) 383, 422, 554, 596, 1069, 1186
AfiI CCNNNNNNNGG 5 cut(s) 316, 578, 725, 816, 1210
AhlI ACTAGT 1 cut(s) 244
AjnI CCWGG 1 cut(s) 901
AjuI GAANNNNNNNTTGG 2 cut(s) 325, 357
AluBI AGCT 4 cut(s) 414, 1137, 1232, 1238
AluI AGCT 4 cut(s) 414, 1137, 1232, 1238
Alw26I GTCTC 5 cut(s) 253, 333, 524, 665, 1227
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 922
AoxI GGCC 3 cut(s) 307, 655, 1086
ApeKI GCWGC 3 cut(s) 1115, 1229, 1352
ApoI RAATTY 4 cut(s) 640, 688, 730, 952
Asp700I GAANNNNTTC 1 cut(s) 955
AspLEI GCGC 1 cut(s) 1042
AspS9I GGNCC 2 cut(s) 569, 807
AsuHPI GGTGA 1 cut(s) 694
AsuII TTCGAA 1 cut(s) 1190
AsuNHI GCTAGC 1 cut(s) 457
AvaI CYCGRG 1 cut(s) 922
AvaII GGWCC 2 cut(s) 569, 807
BanII GRGCYC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 707, 890
BbvI GCAGC 3 cut(s) 1102, 1241, 1364
BccI CCATC 6 cut(s) 230, 275, 530, 647, 701, 752
BceAI ACGGC 2 cut(s) 642, 1103
BciT130I CCWGG 1 cut(s) 903
BclI TGATCA 1 cut(s) 496
BcoDI GTCTC 5 cut(s) 253, 333, 524, 665, 1227
BcuI ACTAGT 1 cut(s) 244
BfaI CTAG 3 cut(s) 245, 458, 723
BfmI CTRYAG 4 cut(s) 65, 225, 889, 1227
BisI GCNGC 4 cut(s) 1021, 1116, 1230, 1353
BlsI GCNGC 4 cut(s) 1022, 1117, 1231, 1354
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 2 cut(s) 569, 807
BmeT110I CYCGRG 1 cut(s) 922
BmgT120I GGNCC 2 cut(s) 569, 807
BmiI GGNNCC 1 cut(s) 809
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 1 cut(s) 1025
BmsI GCATC 5 cut(s) 345, 611, 742, 958, 1027
BmtI GCTAGC 1 cut(s) 461
BmuI ACTGGG 1 cut(s) 1025
BpiI GAAGAC 2 cut(s) 707, 890
BpmI CTGGAG 3 cut(s) 216, 1218, 1224
Bpu14I TTCGAA 1 cut(s) 1190
BpuEI CTTGAG 1 cut(s) 1190
BsaBI GATNNNNATC 1 cut(s) 910
BsaWI WCCGGW 1 cut(s) 131
Bsc4I CCNNNNNNNGG 5 cut(s) 316, 578, 725, 816, 1210
Bse1I ACTGG 6 cut(s) 126, 418, 550, 571, 685, 1020
Bse3DI GCAATG 1 cut(s) 172
Bse8I GATNNNNATC 1 cut(s) 910
BseBI CCWGG 1 cut(s) 903
BseGI GGATG 2 cut(s) 763, 1042
BseJI GATNNNNATC 1 cut(s) 910
BseLI CCNNNNNNNGG 5 cut(s) 316, 578, 725, 816, 1210
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 6 cut(s) 126, 418, 550, 571, 685, 1020
BseXI GCAGC 3 cut(s) 1102, 1241, 1364
BsgI GTGCAG 1 cut(s) 1371
BshFI GGCC 3 cut(s) 309, 657, 1088
BsiHKCI CYCGRG 1 cut(s) 922
BsiSI CCGG 1 cut(s) 132
BslFI GGGAC 3 cut(s) 185, 793, 827
BslI CCNNNNNNNGG 5 cut(s) 316, 578, 725, 816, 1210
BsmAI GTCTC 5 cut(s) 253, 333, 524, 665, 1227
BsmBI CGTCTC 2 cut(s) 524, 665
BsmFI GGGAC 3 cut(s) 185, 793, 827
BsnI GGCC 3 cut(s) 309, 657, 1088
BsoBI CYCGRG 1 cut(s) 922
Bsp119I TTCGAA 1 cut(s) 1190
Bsp1286I GDGCHC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 381
Bsp143I GATC 4 cut(s) 229, 496, 613, 784
BspACI CCGC 3 cut(s) 755, 858, 1020
BspANI GGCC 3 cut(s) 309, 657, 1088
BspLI GGNNCC 1 cut(s) 809
BspMAI CTGCAG 3 cut(s) 69, 229, 1231
BspOI GCTAGC 1 cut(s) 461
BspT104I TTCGAA 1 cut(s) 1190
BsrDI GCAATG 1 cut(s) 172
BsrGI TGTACA 1 cut(s) 381
BsrI ACTGG 6 cut(s) 126, 418, 550, 571, 685, 1020
BssMI GATC 4 cut(s) 229, 496, 613, 784
Bst2UI CCWGG 1 cut(s) 903
Bst4CI ACNGT 3 cut(s) 214, 875, 1109
Bst6I CTCTTC 1 cut(s) 1168
BstAUI TGTACA 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 1190
BstC8I GCNNGC 3 cut(s) 459, 973, 1135
BstENI CCTNNNNNAGG 1 cut(s) 1208
BstF5I GGATG 2 cut(s) 763, 1042
BstHHI GCGC 1 cut(s) 1042
BstKTI GATC 4 cut(s) 232, 499, 616, 787
BstMAI GTCTC 5 cut(s) 253, 333, 524, 665, 1227
BstMBI GATC 4 cut(s) 229, 496, 613, 784
BstMWI GCNNNNNNNGC 4 cut(s) 395, 599, 1235, 1244
BstNI CCWGG 1 cut(s) 903
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 4 cut(s) 65, 225, 889, 1227
BstV1I GCAGC 3 cut(s) 1102, 1241, 1364
BstV2I GAAGAC 2 cut(s) 707, 890
BsuRI GGCC 3 cut(s) 309, 657, 1088
BtsCI GGATG 2 cut(s) 763, 1042
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 2 cut(s) 452, 564
Cac8I GCNNGC 3 cut(s) 459, 973, 1135
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 1 cut(s) 1042
Cfr13I GGNCC 2 cut(s) 569, 807
CseI GACGC 1 cut(s) 1253
Csp6I GTAC 6 cut(s) 382, 421, 553, 595, 1068, 1185
CviAII CATG 3 cut(s) 1006, 1029, 1219
CviQI GTAC 6 cut(s) 382, 421, 553, 595, 1068, 1185
DpnI GATC 4 cut(s) 231, 498, 615, 786
DpnII GATC 4 cut(s) 229, 496, 613, 784
EaeI YGGCCR 1 cut(s) 655
Eam1104I CTCTTC 1 cut(s) 1168
EarI CTCTTC 1 cut(s) 1168
Eco147I AGGCCT 1 cut(s) 1088
Eco24I GRGCYC 1 cut(s) 89
Eco47I GGWCC 2 cut(s) 569, 807
Eco57I CTGAAG 2 cut(s) 72, 921
Eco88I CYCGRG 1 cut(s) 922
EcoNI CCTNNNNNAGG 1 cut(s) 1208
EcoRII CCWGG 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 89
Esp3I CGTCTC 2 cut(s) 524, 665
FaeI CATG 3 cut(s) 1009, 1032, 1222
FaqI GGGAC 3 cut(s) 185, 793, 827
FatI CATG 3 cut(s) 1005, 1028, 1218
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 496
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 4 cut(s) 1021, 1116, 1230, 1353
FokI GGATG 2 cut(s) 770, 1049
FriOI GRGCYC 1 cut(s) 89
Fsp4HI GCNGC 4 cut(s) 1021, 1116, 1230, 1353
FspBI CTAG 3 cut(s) 245, 458, 723
GlaI GCGC 1 cut(s) 1041
GluI GCNGC 4 cut(s) 1021, 1116, 1230, 1353
GsuI CTGGAG 3 cut(s) 216, 1218, 1224
HaeIII GGCC 3 cut(s) 309, 657, 1088
HapII CCGG 1 cut(s) 132
HgaI GACGC 1 cut(s) 1253
HhaI GCGC 1 cut(s) 1042
Hin1II CATG 3 cut(s) 1009, 1032, 1222
Hin6I GCGC 1 cut(s) 1040
HinP1I GCGC 1 cut(s) 1040
HincII GTYRAC 3 cut(s) 300, 562, 919
HindII GTYRAC 3 cut(s) 300, 562, 919
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 7 cut(s) 198, 326, 362, 391, 697, 911, 1373
HpaII CCGG 1 cut(s) 132
HphI GGTGA 1 cut(s) 694
Hpy166II GTNNAC 5 cut(s) 222, 242, 300, 562, 919
Hpy188I TCNGA 2 cut(s) 490, 933
Hpy188III TCNNGA 5 cut(s) 233, 788, 1241, 1288, 1377
Hpy8I GTNNAC 5 cut(s) 222, 242, 300, 562, 919
Hpy99I CGWCG 1 cut(s) 1372
HpyAV CCTTC 2 cut(s) 299, 460
HpyCH4III ACNGT 3 cut(s) 214, 875, 1109
HpyCH4IV ACGT 2 cut(s) 532, 1194
HpyF10VI GCNNNNNNNGC 4 cut(s) 395, 599, 1235, 1244
HpySE526I ACGT 2 cut(s) 532, 1194
Hsp92II CATG 3 cut(s) 1009, 1032, 1222
HspAI GCGC 1 cut(s) 1040
Ksp22I TGATCA 1 cut(s) 496
Kzo9I GATC 4 cut(s) 229, 496, 613, 784
LmnI GCTCC 2 cut(s) 1237, 1243
Lsp1109I GCAGC 3 cut(s) 1102, 1241, 1364
LweI GCATC 5 cut(s) 345, 611, 742, 958, 1027
MaeI CTAG 3 cut(s) 245, 458, 723
MaeII ACGT 2 cut(s) 532, 1194
MaeIII GTNAC 4 cut(s) 633, 869, 877, 1331
MalI GATC 4 cut(s) 231, 498, 615, 786
MboI GATC 4 cut(s) 229, 496, 613, 784
MhlI GDGCHC 1 cut(s) 89
MlyI GAGTC 3 cut(s) 207, 335, 400
MnlI CCTC 8 cut(s) 704, 719, 1027, 1090, 1143, 1174, 1204, 1214
MroXI GAANNNNTTC 1 cut(s) 955
MseI TTAA 3 cut(s) 95, 692, 864
MspI CCGG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 903
MvaI CCWGG 1 cut(s) 903
MwoI GCNNNNNNNGC 4 cut(s) 395, 599, 1235, 1244
NdeI CATATG 1 cut(s) 574
NdeII GATC 4 cut(s) 229, 496, 613, 784
NheI GCTAGC 1 cut(s) 457
NlaIII CATG 3 cut(s) 1009, 1032, 1222
NlaIV GGNNCC 1 cut(s) 809
NmuCI GTSAC 2 cut(s) 633, 1331
NspV TTCGAA 1 cut(s) 1190
PceI AGGCCT 1 cut(s) 1088
PdmI GAANNNNTTC 1 cut(s) 955
PfeI GAWTC 3 cut(s) 362, 697, 911
PflFI GACNNNGTC 1 cut(s) 1372
PflMI CCANNNNNTGG 1 cut(s) 578
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 4 cut(s) 1022, 1117, 1231, 1354
PleI GAGTC 3 cut(s) 206, 334, 399
PpsI GAGTC 3 cut(s) 206, 334, 399
Psp6I CCWGG 1 cut(s) 901
PspGI CCWGG 1 cut(s) 901
PspN4I GGNNCC 1 cut(s) 809
PspPI GGNCC 2 cut(s) 569, 807
PstI CTGCAG 3 cut(s) 69, 229, 1231
PstNI CAGNNNCTG 1 cut(s) 494
PsyI GACNNNGTC 1 cut(s) 1372
RsaI GTAC 6 cut(s) 383, 422, 554, 596, 1069, 1186
RsaNI GTAC 6 cut(s) 382, 421, 553, 595, 1068, 1185
SalI GTCGAC 1 cut(s) 298
SaqAI TTAA 3 cut(s) 95, 692, 864
SatI GCNGC 4 cut(s) 1021, 1116, 1230, 1353
Sau3AI GATC 4 cut(s) 229, 496, 613, 784
Sau96I GGNCC 2 cut(s) 569, 807
SchI GAGTC 3 cut(s) 207, 335, 400
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 1 cut(s) 89
SfaNI GCATC 5 cut(s) 345, 611, 742, 958, 1027
SfcI CTRYAG 4 cut(s) 65, 225, 889, 1227
SfuI TTCGAA 1 cut(s) 1190
SinI GGWCC 2 cut(s) 569, 807
SmlI CTYRAG 1 cut(s) 1205
SmoI CTYRAG 1 cut(s) 1205
SpeI ACTAGT 1 cut(s) 244
SseBI AGGCCT 1 cut(s) 1088
SsiI CCGC 3 cut(s) 755, 858, 1020
SspMI CTAG 3 cut(s) 245, 458, 723
StuI AGGCCT 1 cut(s) 1088
StyD4I CCNGG 1 cut(s) 901
TaaI ACNGT 3 cut(s) 214, 875, 1109
TaiI ACGT 2 cut(s) 535, 1197
TaqI TCGA 6 cut(s) 232, 299, 353, 616, 1190, 1367
TatI WGTACW 1 cut(s) 381
TauI GCSGC 1 cut(s) 1023
TfiI GAWTC 3 cut(s) 362, 697, 911
Tru1I TTAA 3 cut(s) 95, 692, 864
Tru9I TTAA 3 cut(s) 95, 692, 864
TscAI CASTG 2 cut(s) 459, 571
TseFI GTSAC 2 cut(s) 633, 1331
TseI GCWGC 3 cut(s) 1115, 1229, 1352
Tsp45I GTSAC 2 cut(s) 633, 1331
TspDTI ATGAA 1 cut(s) 710
TspGWI ACGGA 3 cut(s) 506, 845, 1319
TspRI CASTG 2 cut(s) 459, 571
Tth111I GACNNNGTC 1 cut(s) 1372
Van91I CCANNNNNTGG 1 cut(s) 578
VpaK11BI GGWCC 2 cut(s) 569, 807
XagI CCTNNNNNAGG 1 cut(s) 1208
XapI RAATTY 4 cut(s) 640, 688, 730, 952
XcmI CCANNNNNNNNNTGG 1 cut(s) 1012
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 955
XspI CTAG 3 cut(s) 245, 458, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.