pycom16g02810

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0002199
Physical Location & Seq
Reverse (-)
1793030 .. 1795455
2426 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g02810.1

Sequence Viewer

Length: 888 bp
ATGTCACTCACAATCTTCCAACCCGCATCGGTCACCCTCCACTCCCATGCGCACCTTAGCTCCCCCCTCCACCCCATGTCTATCCTACGCCGCCTCAACCCCCACCACCTAAAACTACGCCGCCACCGCTTCGCCACCGTCGCCGCGGCCGTACGCCAAGACACCGCCCTCTGGACCCCTGCCCCGCTCTCCGAGATAGAACCGGCCGCGGAGTCGCTCTTCCACGTCCGCATCGACCTATCCGACGCGCCCGACCTCGCCTCGTCCCACACGCGAGCCGGCCAGTACCTCCAGCTTCGCGTCCCGGACGAGTCGAAGCCCTCGTTTCTGGCCATCGCCTCGCCGCCATCGTTGGCGTCCACAAAAGGGGTGTTTGAGTTTTTGGTGAAGAGCGTGGCCGGGTCCACGGCGGAGCTTCTGTGCGGGCTCAAGAGAGGGGCCGTGGTGGAGCTCAGCCAGGTCATGGGAAAAGGCTTCGACATTGAACGGATCGAACCGCCGGAAAATTACCCTACGGTTCTAATTTTCGCCACGGGATCTGGAATCAGTCCAATCCGGTCTCTGATCGAATCGGGGTTTAGCGCCGATAAGAGATCCGCCGTGAAGCTATTTTACGGCGCAAGAAACCTTGACAGAATGGCGTATCAGGATAGATTTAAGGACTGGGAATCTTCAGGTGTTGAGATTGTGCCAGTATTATCACAACCGCACGGCGGTTGGACGGGACAAGGCGGTTATGTGCAGGCTGCCTTTTCCAGAGCCAAGCAAATTGATAACCCTCTCTCTACAGCTGCTGTTTTATGTGGGCAGAAGCAGATGACTGAGGAGGTTACCTCAATTCTTGTAGCAGATGGTGTATCAACTGAAAACATACTGAAGAATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

296

Amino Acids

32.05

Weight (kDa)

7.86

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_binding_1 PF00175 177 - 277 4e-15 Oxidoreductase NAD-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 51
AccB7I CCANNNNNTGG 1 cut(s) 463
AccBSI CCGCTC 1 cut(s) 187
AccII CGCG 5 cut(s) 146, 209, 248, 274, 300
AclWI GGATC 3 cut(s) 497, 544, 588
AcoI YGGCCR 5 cut(s) 147, 204, 280, 330, 396
AcsI RAATTY 1 cut(s) 880
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 2 cut(s) 153, 287
AfiI CCNNNNNNNGG 4 cut(s) 171, 366, 463, 713
AgsI TTSAA 1 cut(s) 485
AjiI CACGTC 1 cut(s) 226
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 6 cut(s) 60, 295, 415, 451, 607, 791
AluI AGCT 6 cut(s) 60, 295, 415, 451, 607, 791
Alw21I GWGCWC 1 cut(s) 453
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 3 cut(s) 497, 544, 588
AlwNI CAGNNNCTG 1 cut(s) 794
AoxI GGCC 6 cut(s) 147, 204, 280, 330, 396, 438
ApeKI GCWGC 2 cut(s) 746, 791
ApoI RAATTY 1 cut(s) 880
Asp700I GAANNNNTTC 1 cut(s) 881
AspLEI GCGC 4 cut(s) 52, 250, 584, 620
AspS9I GGNCC 3 cut(s) 174, 402, 438
AsuC2I CCSGG 2 cut(s) 305, 400
AsuHPI GGTGA 2 cut(s) 25, 397
AvaII GGWCC 2 cut(s) 174, 402
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 2 cut(s) 429, 453
BarI GAAGNNNNNNTAC 2 cut(s) 596, 628
Bbv12I GWGCWC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 733, 778
BccI CCATC 3 cut(s) 341, 355, 845
BceAI ACGGC 6 cut(s) 134, 423, 425, 584, 631, 727
BciT130I CCWGG 1 cut(s) 458
BcnI CCSGG 2 cut(s) 305, 400
BcoDI GTCTC 1 cut(s) 564
BfmI CTRYAG 1 cut(s) 786
BfoI RGCGCY 1 cut(s) 585
BisI GCNGC 8 cut(s) 91, 121, 144, 147, 207, 344, 747, 792
BlpI GCTNAGC 1 cut(s) 452
BlsI GCNGC 8 cut(s) 92, 122, 145, 148, 208, 345, 748, 793
Bme1390I CCNGG 3 cut(s) 305, 400, 458
Bme18I GGWCC 2 cut(s) 174, 402
BmgBI CACGTC 1 cut(s) 226
BmgT120I GGNCC 3 cut(s) 174, 402, 438
BmiI GGNNCC 3 cut(s) 176, 403, 439
BmrFI CCNGG 3 cut(s) 305, 400, 458
BmrI ACTGGG 1 cut(s) 673
BmsI GCATC 2 cut(s) 35, 240
BmuI ACTGGG 1 cut(s) 673
BplI GAGNNNNNCTC 2 cut(s) 818, 850
BpmI CTGGAG 1 cut(s) 275
Bpu10I CCTNAGC 1 cut(s) 56
Bpu1102I GCTNAGC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 413
BpuMI CCSGG 2 cut(s) 305, 400
BsaHI GRCGYC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 564
BsaJI CCNNGG 5 cut(s) 144, 207, 405, 441, 531
BsaWI WCCGGW 1 cut(s) 555
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 404, 434
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 366, 463, 713
Bse118I RCCGGY 2 cut(s) 202, 278
Bse1I ACTGG 3 cut(s) 283, 668, 692
BseBI CCWGG 1 cut(s) 458
BseDI CCNNGG 5 cut(s) 144, 207, 405, 441, 531
BseLI CCNNNNNNNGG 4 cut(s) 171, 366, 463, 713
BseMII CTCAG 2 cut(s) 466, 813
BseNI ACTGG 3 cut(s) 283, 668, 692
BseRI GAGGAG 1 cut(s) 839
BseX3I CGGCCG 2 cut(s) 147, 204
BseXI GCAGC 2 cut(s) 733, 778
BsgI GTGCAG 1 cut(s) 761
Bsh1236I CGCG 5 cut(s) 146, 209, 248, 274, 300
Bsh1285I CGRYCG 2 cut(s) 150, 207
BshFI GGCC 6 cut(s) 149, 206, 282, 332, 398, 440
BsiEI CGRYCG 2 cut(s) 150, 207
BsiHKAI GWGCWC 1 cut(s) 453
BsiSI CCGG 6 cut(s) 203, 279, 305, 399, 500, 556
BsiWI CGTACG 1 cut(s) 151
BslFI GGGAC 3 cut(s) 250, 287, 738
BslI CCNNNNNNNGG 4 cut(s) 171, 366, 463, 713
BsmAI GTCTC 1 cut(s) 564
BsmFI GGGAC 3 cut(s) 250, 287, 738
BsnI GGCC 6 cut(s) 149, 206, 282, 332, 398, 440
Bso31I GGTCTC 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 429, 453
Bsp143I GATC 4 cut(s) 489, 536, 564, 593
Bsp1720I GCTNAGC 1 cut(s) 452
BspANI GGCC 6 cut(s) 149, 206, 282, 332, 398, 440
BspCNI CTCAG 2 cut(s) 465, 814
BspFNI CGCG 5 cut(s) 146, 209, 248, 274, 300
BspLI GGNNCC 3 cut(s) 176, 403, 439
BspPI GGATC 3 cut(s) 497, 544, 588
BspQI GCTCTTC 2 cut(s) 224, 383
BspTNI GGTCTC 1 cut(s) 564
BsrBI CCGCTC 1 cut(s) 187
BsrFI RCCGGY 2 cut(s) 202, 278
BsrI ACTGG 3 cut(s) 283, 668, 692
BssAI RCCGGY 2 cut(s) 202, 278
BssECI CCNNGG 5 cut(s) 144, 207, 405, 441, 531
BssMI GATC 4 cut(s) 489, 536, 564, 593
BssNI GRCGYC 1 cut(s) 356
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 2 cut(s) 139, 517
Bst6I CTCTTC 2 cut(s) 224, 383
BstACI GRCGYC 1 cut(s) 356
BstC8I GCNNGC 4 cut(s) 276, 280, 425, 744
BstDEI CTNAG 3 cut(s) 56, 452, 822
BstDSI CCRYGG 5 cut(s) 144, 207, 405, 441, 531
BstEII GGTNACC 2 cut(s) 31, 829
BstFNI CGCG 5 cut(s) 146, 209, 248, 274, 300
BstH2I RGCGCY 1 cut(s) 585
BstHHI GCGC 4 cut(s) 52, 250, 584, 620
BstKTI GATC 4 cut(s) 492, 539, 567, 596
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 4 cut(s) 489, 536, 564, 593
BstMCI CGRYCG 2 cut(s) 150, 207
BstMWI GCNNNNNNNGC 2 cut(s) 126, 140
BstNI CCWGG 1 cut(s) 458
BstPI GGTNACC 2 cut(s) 31, 829
BstSCI CCNGG 3 cut(s) 303, 398, 456
BstSFI CTRYAG 1 cut(s) 786
BstUI CGCG 5 cut(s) 146, 209, 248, 274, 300
BstV1I GCAGC 2 cut(s) 733, 778
BstX2I RGATCY 2 cut(s) 536, 593
BstYI RGATCY 2 cut(s) 536, 593
BstZI CGGCCG 2 cut(s) 147, 204
BsuRI GGCC 6 cut(s) 149, 206, 282, 332, 398, 440
BtgI CCRYGG 5 cut(s) 144, 207, 405, 441, 531
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 1 cut(s) 226
Cac8I GCNNGC 4 cut(s) 276, 280, 425, 744
CaiI CAGNNNCTG 1 cut(s) 794
CfoI GCGC 4 cut(s) 52, 250, 584, 620
Cfr10I RCCGGY 2 cut(s) 202, 278
Cfr13I GGNCC 3 cut(s) 174, 402, 438
Cfr42I CCGCGG 2 cut(s) 147, 210
CseI GACGC 3 cut(s) 254, 289, 345
Csp6I GTAC 2 cut(s) 152, 286
CviAII CATG 3 cut(s) 47, 76, 463
CviQI GTAC 2 cut(s) 152, 286
DdeI CTNAG 3 cut(s) 56, 452, 822
DpnI GATC 4 cut(s) 491, 538, 566, 595
DpnII GATC 4 cut(s) 489, 536, 564, 593
EaeI YGGCCR 5 cut(s) 147, 204, 280, 330, 396
EagI CGGCCG 2 cut(s) 147, 204
Eam1104I CTCTTC 2 cut(s) 224, 383
EarI CTCTTC 2 cut(s) 224, 383
EciI GGCGGA 2 cut(s) 425, 586
Ecl136II GAGCTC 1 cut(s) 451
EclXI CGGCCG 2 cut(s) 147, 204
Eco24I GRGCYC 2 cut(s) 429, 453
Eco31I GGTCTC 1 cut(s) 564
Eco47I GGWCC 2 cut(s) 174, 402
Eco52I CGGCCG 2 cut(s) 147, 204
Eco53kI GAGCTC 1 cut(s) 451
Eco57I CTGAAG 1 cut(s) 657
Eco91I GGTNACC 2 cut(s) 31, 829
EcoICRI GAGCTC 1 cut(s) 451
EcoO65I GGTNACC 2 cut(s) 31, 829
EcoRII CCWGG 1 cut(s) 456
EcoT38I GRGCYC 2 cut(s) 429, 453
FaeI CATG 3 cut(s) 50, 79, 466
FaiI YATR 6 cut(s) 48, 77, 464, 738, 802, 872
FaqI GGGAC 3 cut(s) 250, 287, 738
FatI CATG 3 cut(s) 46, 75, 462
FauI CCCGC 3 cut(s) 31, 192, 416
Fnu4HI GCNGC 8 cut(s) 91, 121, 144, 147, 207, 344, 747, 792
FriOI GRGCYC 2 cut(s) 429, 453
Fsp4HI GCNGC 8 cut(s) 91, 121, 144, 147, 207, 344, 747, 792
FspAI RTGCGCAY 1 cut(s) 51
FspI TGCGCA 1 cut(s) 51
GlaI GCGC 4 cut(s) 51, 249, 583, 619
GluI GCNGC 8 cut(s) 91, 121, 144, 147, 207, 344, 747, 792
GsuI CTGGAG 1 cut(s) 275
HaeII RGCGCY 1 cut(s) 585
HaeIII GGCC 6 cut(s) 149, 206, 282, 332, 398, 440
HapII CCGG 6 cut(s) 203, 279, 305, 399, 500, 556
HgaI GACGC 3 cut(s) 254, 289, 345
HhaI GCGC 4 cut(s) 52, 250, 584, 620
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 3 cut(s) 50, 79, 466
Hin6I GCGC 4 cut(s) 50, 248, 582, 618
HinP1I GCGC 4 cut(s) 50, 248, 582, 618
HinfI GANTC 5 cut(s) 212, 311, 543, 569, 668
HpaII CCGG 6 cut(s) 203, 279, 305, 399, 500, 556
HphI GGTGA 2 cut(s) 25, 397
Hpy166II GTNNAC 2 cut(s) 360, 405
Hpy188I TCNGA 4 cut(s) 193, 244, 564, 887
Hpy188III TCNNGA 5 cut(s) 172, 430, 540, 647, 756
Hpy8I GTNNAC 2 cut(s) 360, 405
Hpy99I CGWCG 2 cut(s) 143, 248
HpyCH4III ACNGT 2 cut(s) 139, 517
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 140
HpyF3I CTNAG 3 cut(s) 56, 452, 822
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 3 cut(s) 50, 79, 466
HspAI GCGC 4 cut(s) 50, 248, 582, 618
KroI GCCGGC 1 cut(s) 278
KroNI GCCGGC 1 cut(s) 280
KspI CCGCGG 2 cut(s) 147, 210
Kzo9I GATC 4 cut(s) 489, 536, 564, 593
LguI GCTCTTC 2 cut(s) 224, 383
LmnI GCTCC 3 cut(s) 65, 412, 448
Lsp1109I GCAGC 2 cut(s) 733, 778
LweI GCATC 2 cut(s) 35, 240
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 3 cut(s) 3, 31, 829
MalI GATC 4 cut(s) 491, 538, 566, 595
MbiI CCGCTC 1 cut(s) 187
MboI GATC 4 cut(s) 489, 536, 564, 593
MboII GAAGA 4 cut(s) 7, 211, 400, 663
MflI RGATCY 2 cut(s) 536, 593
MhlI GDGCHC 2 cut(s) 429, 453
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 5 cut(s) 505, 522, 768, 837, 880
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 221, 320
MmeI TCCRAC 3 cut(s) 43, 267, 698
Mox20I TGGCCA 1 cut(s) 332
MroNI GCCGGC 1 cut(s) 278
MroXI GAANNNNTTC 1 cut(s) 881
MscI TGGCCA 1 cut(s) 332
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 45
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 3 cut(s) 146, 209, 791
MspI CCGG 6 cut(s) 203, 279, 305, 399, 500, 556
MspR9I CCNGG 3 cut(s) 305, 400, 458
MvaI CCWGG 1 cut(s) 458
MvnI CGCG 5 cut(s) 146, 209, 248, 274, 300
MwoI GCNNNNNNNGC 2 cut(s) 126, 140
NaeI GCCGGC 1 cut(s) 280
NciI CCSGG 2 cut(s) 305, 400
NdeII GATC 4 cut(s) 489, 536, 564, 593
NgoMIV GCCGGC 1 cut(s) 278
NlaIII CATG 3 cut(s) 50, 79, 466
NlaIV GGNNCC 3 cut(s) 176, 403, 439
NmuCI GTSAC 2 cut(s) 3, 31
NsbI TGCGCA 1 cut(s) 51
PciSI GCTCTTC 2 cut(s) 224, 383
PcsI WCGNNNNNNNCGW 5 cut(s) 147, 231, 240, 320, 347
PdiI GCCGGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 881
PfeI GAWTC 3 cut(s) 543, 569, 668
Pfl23II CGTACG 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 303
PkrI GCNGC 8 cut(s) 92, 122, 145, 148, 208, 345, 748, 793
PleI GAGTC 2 cut(s) 220, 319
PpsI GAGTC 2 cut(s) 220, 319
Psp124BI GAGCTC 1 cut(s) 453
Psp6I CCWGG 1 cut(s) 456
PspEI GGTNACC 2 cut(s) 31, 829
PspGI CCWGG 1 cut(s) 456
PspLI CGTACG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 176, 403, 439
PspPI GGNCC 3 cut(s) 174, 402, 438
PstNI CAGNNNCTG 1 cut(s) 794
PsuI RGATCY 2 cut(s) 536, 593
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 2 cut(s) 153, 287
RsaNI GTAC 2 cut(s) 152, 286
RseI CAYNNNNRTG 1 cut(s) 45
SacI GAGCTC 1 cut(s) 453
SacII CCGCGG 2 cut(s) 147, 210
SapI GCTCTTC 2 cut(s) 224, 383
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 8 cut(s) 91, 121, 144, 147, 207, 344, 747, 792
Sau3AI GATC 4 cut(s) 489, 536, 564, 593
Sau96I GGNCC 3 cut(s) 174, 402, 438
SchI GAGTC 2 cut(s) 221, 320
ScrFI CCNGG 3 cut(s) 305, 400, 458
SduI GDGCHC 2 cut(s) 429, 453
SfaNI GCATC 2 cut(s) 35, 240
SfcI CTRYAG 1 cut(s) 786
Sfr303I CCGCGG 2 cut(s) 147, 210
SgrBI CCGCGG 2 cut(s) 147, 210
SinI GGWCC 2 cut(s) 174, 402
SmiMI CAYNNNNRTG 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 5 cut(s) 505, 522, 768, 837, 880
SstI GAGCTC 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 303, 398, 456
TaaI ACNGT 2 cut(s) 139, 517
TaiI ACGT 1 cut(s) 228
TaqI TCGA 5 cut(s) 234, 314, 477, 492, 567
TaqII GACCGA 1 cut(s) 19
TasI AATT 5 cut(s) 505, 522, 768, 837, 880
TauI GCSGC 6 cut(s) 93, 123, 146, 149, 209, 346
TfiI GAWTC 3 cut(s) 543, 569, 668
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TseFI GTSAC 2 cut(s) 3, 31
TseI GCWGC 2 cut(s) 746, 791
Tsp45I GTSAC 2 cut(s) 3, 31
TspGWI ACGGA 1 cut(s) 502
Van91I CCANNNNNTGG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 174, 402
XapI RAATTY 1 cut(s) 880
XmnI GAANNNNTTC 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.