Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Reverse (-)

48229462 .. 48230461

Gene Structure 1000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25553

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGGGAAAGGCTTCGAGATTGATCAGATCGAGCCGCTGGAGAATTATCCTACGGTTCTAATTTTTGCAACGGGCTATGGAACAAGTCCAATCGGGTCTCTCATTGAATCAGGGTTTAATGCTGATAAGCGATCCGACGTGAAGCTCTTCTATGGGATCAGAAACCTTGATAATATGGCTTATCAGATCACTTGGCAGTGGCTTCCTTTTACGAATTCTGCTCAGAAAGATGACTTAAAGCTTTACCATTGGGTGAATTTTTGTACTCCGAAGGTAAAGCTTTATATTTTTAATTTGGTGTTAACTACAGCCTCTCTTCCTATGGAGTATGTTCTAACTTTATATCATCTTGTCTCTGAATATCCAGCTTTTCTTATTTGTTTATCTTTGTTTTTAAAATTTTTGTGCAGTCTGTGCATGGATGTTATCAGATACACCGACGAGGAGTATGAAAAGTATTTGACTGATCCTGTAGCTATGAAATTAGTATTTAGTTGTATATATGATCTTATTTTACTTAATAGTGAGAGGGCTTTCCATTTTGCATCGTGGATTCATAGACTCATTCTTTGTTCTTATCTCTCATTTACACTAGATGTGGACAAAAGAGGGGAGAGATCATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

209

Amino Acids

24.37

Weight (kDa)

5.36

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	3 cut(s)	126, 164, 461
AcsI	RAATTY	3 cut(s)	214, 256, 398
AfaI	GTAC	1 cut(s)	265
AgsI	TTSAA	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	139
AluBI	AGCT	5 cut(s)	145, 241, 280, 368, 476
AluI	AGCT	5 cut(s)	145, 241, 280, 368, 476
Alw26I	GTCTC	2 cut(s)	102, 358
AlwI	GGATC	3 cut(s)	126, 164, 461
ApoI	RAATTY	3 cut(s)	214, 256, 398
ArsI	GACNNNNNNTTYG	2 cut(s)	552, 584
Asp700I	GAANNNNTTC	2 cut(s)	11, 146
AsuHPI	GGTGA	1 cut(s)	265
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	102, 358
BfaI	CTAG	1 cut(s)	593
BfmI	CTRYAG	2 cut(s)	306, 471
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
BmgBI	CACGTC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	102
BseGI	GGATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	236
BseRI	GAGGAG	1 cut(s)	458
BsgI	GTGCAG	1 cut(s)	427
BsmAI	GTCTC	2 cut(s)	102, 358
Bso31I	GGTCTC	1 cut(s)	102
Bsp143I	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
BspACI	CCGC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	235
BspPI	GGATC	3 cut(s)	126, 164, 461
BspQI	GCTCTTC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	102
BssMI	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
Bst4CI	ACNGT	1 cut(s)	55
Bst6I	CTCTTC	2 cut(s)	152, 321
BstAPI	GCANNNNNTGC	1 cut(s)	414
BstDEI	CTNAG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	427
BstKTI	GATC	8 cut(s)	25, 30, 134, 159, 189, 469, 508, 620
BstMAI	GTCTC	2 cut(s)	102, 358
BstMBI	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
BstMWI	GCNNNNNNNGC	1 cut(s)	414
BstSFI	CTRYAG	2 cut(s)	306, 471
BtrI	CACGTC	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	8 cut(s)	24, 29, 133, 158, 188, 468, 507, 619
DpnII	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
DraI	TTTAAA	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	152, 321
EarI	CTCTTC	2 cut(s)	152, 321
Eco31I	GGTCTC	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	214
FaeI	CATG	1 cut(s)	421
FatI	CATG	1 cut(s)	417
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	35
FspBI	CTAG	1 cut(s)	593
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	59
Hin1II	CATG	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	2 cut(s)	239, 278
HinfI	GANTC	3 cut(s)	107, 553, 561
HpaI	GTTAAC	1 cut(s)	303
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	2 cut(s)	303, 601
Hpy188I	TCNGA	8 cut(s)	27, 136, 161, 186, 225, 270, 358, 431
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	2 cut(s)	303, 601
Hpy99I	CGWCG	2 cut(s)	140, 443
HpyAV	CCTTC	1 cut(s)	265
HpyCH4III	ACNGT	1 cut(s)	55
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	68, 408, 417, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	414
HpyF3I	CTNAG	1 cut(s)	222
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	22
KspAI	GTTAAC	1 cut(s)	303
Kzo9I	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
LguI	GCTCTTC	1 cut(s)	152
LpnPI	CCDG	4 cut(s)	23, 96, 378, 483
LweI	GCATC	1 cut(s)	554
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	1 cut(s)	138
MalI	GATC	8 cut(s)	24, 29, 133, 158, 188, 468, 507, 619
MboI	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
MboII	GAAGA	2 cut(s)	139, 308
MluCI	AATT	7 cut(s)	43, 60, 214, 256, 292, 398, 482
MlyI	GAGTC	1 cut(s)	555
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	4 cut(s)	322, 436, 522, 602
MroXI	GAANNNNTTC	2 cut(s)	11, 146
MseI	TTAA	6 cut(s)	117, 236, 291, 302, 395, 519
MspA1I	CMGCKG	1 cut(s)	37
MwoI	GCNNNNNNNGC	1 cut(s)	414
NdeII	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
NlaIII	CATG	1 cut(s)	421
PciSI	GCTCTTC	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	11, 146
PfeI	GAWTC	2 cut(s)	107, 553
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	555
PpsI	GAGTC	1 cut(s)	555
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	152
SaqAI	TTAA	6 cut(s)	117, 236, 291, 302, 395, 519
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	8 cut(s)	22, 27, 131, 156, 186, 466, 505, 617
SchI	GAGTC	1 cut(s)	555
SetI	ASST	8 cut(s)	141, 147, 168, 243, 276, 282, 370, 478
SfaNI	GCATC	1 cut(s)	554
SfcI	CTRYAG	2 cut(s)	306, 471
Sse9I	AATT	7 cut(s)	43, 60, 214, 256, 292, 398, 482
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	593
TaaI	ACNGT	1 cut(s)	55
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	15, 30
TasI	AATT	7 cut(s)	43, 60, 214, 256, 292, 398, 482
TatI	WGTACW	1 cut(s)	263
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	2 cut(s)	107, 553
Tru1I	TTAA	6 cut(s)	117, 236, 291, 302, 395, 519
Tru9I	TTAA	6 cut(s)	117, 236, 291, 302, 395, 519
TscAI	CASTG	1 cut(s)	203
TspDTI	ATGAA	3 cut(s)	465, 494, 545
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	3 cut(s)	214, 256, 398
XmnI	GAANNNNTTC	2 cut(s)	11, 146
XspI	CTAG	1 cut(s)	593

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.