Rroxscaffold_4G00329490

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002199
Physical Location & Seq
Forward (+)
62829000 .. 62829593
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329490.1

Sequence Viewer

Length: 300 bp
ATGTGGGTTGAAGAAGGGGGCGTTGTGGAGCTAACCCTGGTCACAGGGATAGGCTTCGAGATTGATCAGATCGAACCGCCAGAGAATTATCCTATGTTTCTTATTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTAAGCGATCTGACGTGAAACTCTTCTATGGGGCCAGAAATCTTGACAGAATGGCTTATCAGGTCTGTAATAATGTTGTTCTTGTTCATTTTCATGTGTTTTCTAGGGTTATTCTTTTTCGATTTGTGACTAATTTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

99

Amino Acids

11.21

Weight (kDa)

6.05

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 1 cut(s) 124
AgsI TTSAA 1 cut(s) 11
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 189
BciT130I CCWGG 1 cut(s) 38
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 261
Bme1390I CCNGG 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 38
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 36
BshFI GGCC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 135
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 135
Bsp143I GATC 4 cut(s) 64, 69, 116, 164
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 135
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 64, 69, 116, 164
Bst2UI CCWGG 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 185
BstKTI GATC 4 cut(s) 67, 72, 119, 167
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 64, 69, 116, 164
BstNI CCWGG 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 129
CviAII CATG 1 cut(s) 251
CviJI RGCY 4 cut(s) 31, 54, 191, 212
CviKI_1 RGCY 4 cut(s) 31, 54, 191, 212
DpnI GATC 4 cut(s) 66, 71, 118, 166
DpnII GATC 4 cut(s) 64, 69, 116, 164
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco31I GGTCTC 1 cut(s) 135
EcoRII CCWGG 1 cut(s) 36
FaeI CATG 1 cut(s) 254
FaiI YATR 3 cut(s) 95, 186, 252
FatI CATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 64
FspBI CTAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 254
HinfI GANTC 1 cut(s) 123
Hpy188I TCNGA 3 cut(s) 69, 135, 169
Hpy188III TCNNGA 3 cut(s) 58, 120, 200
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 64, 69, 116, 164
LmnI GCTCC 1 cut(s) 28
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 2 cut(s) 40, 283
MalI GATC 4 cut(s) 66, 71, 118, 166
MboI GATC 4 cut(s) 64, 69, 116, 164
MboII GAAGA 2 cut(s) 23, 172
MflI RGATCY 1 cut(s) 116
MluCI AATT 2 cut(s) 85, 289
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 150
MslI CAYNNNNRTG 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
NdeII GATC 4 cut(s) 64, 69, 116, 164
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 2 cut(s) 40, 283
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 116
RseI CAYNNNNRTG 1 cut(s) 249
SaqAI TTAA 1 cut(s) 150
Sau3AI GATC 4 cut(s) 64, 69, 116, 164
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 38
SetI ASST 4 cut(s) 33, 131, 174, 222
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 2 cut(s) 85, 289
SsiI CCGC 1 cut(s) 77
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 36
TaiI ACGT 1 cut(s) 174
TaqI TCGA 3 cut(s) 57, 72, 277
TasI AATT 2 cut(s) 85, 289
TfiI GAWTC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TseFI GTSAC 2 cut(s) 40, 283
Tsp45I GTSAC 2 cut(s) 40, 283
TspDTI ATGAA 2 cut(s) 233, 239
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.