Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002503.1

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Forward (+)

39904 .. 40416

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002503.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ctgccactaggaggcagcgaccatttgaccaagcaaggaactcgccgcctacctagagcagacaaggcacacgagtcaccccaaacaggacctgcccagcgtcgcccttcctccttcgccagaacgccggtgacggtccggcatctcagacgagtccagggcccctgtcaatccagatcggagccaagccttgcagaaacgtcgtcatcgtcgaaccatggagaaaccatcttcgtcgcccacccggatcgggatttgaagatcctgcccagatcgagttgctctgattgcctcccggccacgtcgctccagacgcctcaccgcctgaccgcctccaaaacgctgatccgtgctgtcgatgaggccaccgaagagagagcccgggccagccaacagttgcgatcgtccccaccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.07

Weight (kDa)

10.67

Isoelectric Point (pI)

81.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	100
AciI	CCGC	3 cut(s)	46, 322, 330
AclWI	GGATC	3 cut(s)	255, 256, 340
AcoI	YGGCCR	1 cut(s)	297
AcyI	GRCGYC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	11, 86, 250
AgsI	TTSAA	1 cut(s)	259
AjiI	CACGTC	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	156
AlwI	GGATC	3 cut(s)	255, 256, 340
AlwNI	CAGNNNCTG	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	381
AoxI	GGCC	4 cut(s)	160, 297, 363, 384
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	1 cut(s)	15
AspS9I	GGNCC	5 cut(s)	89, 136, 160, 161, 384
AsuC2I	CCSGG	4 cut(s)	245, 296, 382, 383
AsuHPI	GGTGA	3 cut(s)	69, 142, 311
AvaI	CYCGRG	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	89, 136
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	2 cut(s)	164, 382
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	27
BccI	CCATC	1 cut(s)	236
BcgI	CGANNNNNNTGC	4 cut(s)	23, 57, 183, 217
BciT130I	CCWGG	1 cut(s)	158
BcnI	CCSGG	4 cut(s)	245, 296, 382, 383
BfaI	CTAG	2 cut(s)	8, 54
BfuAI	ACCTGC	1 cut(s)	100
BisI	GCNGC	2 cut(s)	16, 46
BlsI	GCNGC	2 cut(s)	17, 47
Bme1390I	CCNGG	5 cut(s)	158, 245, 296, 382, 383
Bme18I	GGWCC	2 cut(s)	89, 136
BmeT110I	CYCGRG	1 cut(s)	381
BmgBI	CACGTC	1 cut(s)	303
BmgT120I	GGNCC	5 cut(s)	89, 136, 160, 161, 384
BmiI	GGNNCC	3 cut(s)	162, 163, 183
BmrFI	CCNGG	5 cut(s)	158, 245, 296, 382, 383
BmsI	GCATC	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	293
BpuMI	CCSGG	4 cut(s)	245, 296, 382, 383
BsaHI	GRCGYC	1 cut(s)	314
BsaJI	CCNNGG	3 cut(s)	157, 217, 381
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 86, 250
Bse118I	RCCGGY	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	158
BseDI	CCNNGG	3 cut(s)	157, 217, 381
BseLI	CCNNNNNNNGG	3 cut(s)	11, 86, 250
BseMII	CTCAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	27
BseYI	CCCAGC	1 cut(s)	96
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	162, 299, 365, 386
BsiEI	CGRYCG	1 cut(s)	404
BsiHKCI	CYCGRG	1 cut(s)	381
BsiSI	CCGG	5 cut(s)	128, 139, 245, 296, 382
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	3 cut(s)	11, 86, 250
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	4 cut(s)	162, 299, 365, 386
BsoBI	CYCGRG	1 cut(s)	381
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	164, 382
Bsp143I	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
Bsp19I	CCATGG	1 cut(s)	217
BspACI	CCGC	3 cut(s)	46, 322, 330
BspANI	GGCC	4 cut(s)	162, 299, 365, 386
BspCNI	CTCAG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	162, 163, 183
BspMI	ACCTGC	1 cut(s)	100
BspPI	GGATC	3 cut(s)	255, 256, 340
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	3 cut(s)	157, 217, 381
BssMI	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
BssNI	GRCGYC	1 cut(s)	314
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	2 cut(s)	136, 396
Bst6I	CTCTTC	1 cut(s)	366
BstACI	GRCGYC	1 cut(s)	314
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	146
BstDSI	CCRYGG	1 cut(s)	217
BstKTI	GATC	6 cut(s)	179, 250, 264, 275, 348, 404
BstMBI	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 288, 313
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	5 cut(s)	156, 243, 294, 380, 381
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	27
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BsuRI	GGCC	4 cut(s)	162, 299, 365, 386
BtgI	CCRYGG	1 cut(s)	217
BtrI	CACGTC	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	388
CaiI	CAGNNNCTG	1 cut(s)	92
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	5 cut(s)	89, 136, 160, 161, 384
Cfr9I	CCCGGG	1 cut(s)	381
CpoI	CGGWCCG	1 cut(s)	136
CseI	GACGC	2 cut(s)	89, 322
CspI	CGGWCCG	1 cut(s)	136
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	8 cut(s)	162, 184, 189, 299, 365, 380, 386, 390
CviKI_1	RGCY	8 cut(s)	162, 184, 189, 299, 365, 380, 386, 390
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	6 cut(s)	178, 249, 263, 274, 347, 403
DpnII	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	2 cut(s)	164, 382
Eco47I	GGWCC	2 cut(s)	89, 136
Eco88I	CYCGRG	1 cut(s)	381
EcoO109I	RGGNCCY	3 cut(s)	89, 160, 161
EcoRII	CCWGG	1 cut(s)	156
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	2 cut(s)	164, 382
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	221
FaiI	YATR	1 cut(s)	219
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	16, 46
FriOI	GRGCYC	2 cut(s)	164, 382
Fsp4HI	GCNGC	2 cut(s)	16, 46
FspBI	CTAG	2 cut(s)	8, 54
GluI	GCNGC	2 cut(s)	16, 46
GsaI	CCCAGC	1 cut(s)	100
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	4 cut(s)	162, 299, 365, 386
HapII	CCGG	5 cut(s)	128, 139, 245, 296, 382
HgaI	GACGC	2 cut(s)	89, 322
Hin1I	GRCGYC	1 cut(s)	314
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	2 cut(s)	74, 153
HpaII	CCGG	5 cut(s)	128, 139, 245, 296, 382
HphI	GGTGA	3 cut(s)	69, 142, 311
Hpy188I	TCNGA	3 cut(s)	149, 181, 286
Hpy188III	TCNNGA	3 cut(s)	174, 251, 310
Hpy99I	CGWCG	5 cut(s)	105, 205, 214, 239, 307
HpyAV	CCTTC	2 cut(s)	117, 124
HpyCH4III	ACNGT	2 cut(s)	136, 396
HpyCH4IV	ACGT	2 cut(s)	200, 302
HpyCH4V	TGCA	1 cut(s)	194
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 288, 313
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	200, 302
Hsp92I	GRCGYC	1 cut(s)	314
Hsp92II	CATG	1 cut(s)	221
Kzo9I	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
LmnI	GCTCC	2 cut(s)	181, 312
Lsp1109I	GCAGC	1 cut(s)	27
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	8, 54
MaeII	ACGT	2 cut(s)	200, 302
MaeIII	GTNAC	2 cut(s)	75, 130
MalI	GATC	6 cut(s)	178, 249, 263, 274, 347, 403
MboI	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
MboII	GAAGA	3 cut(s)	223, 271, 383
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	2 cut(s)	164, 382
MlyI	GAGTC	2 cut(s)	83, 162
MnlI	CCTC	6 cut(s)	5, 121, 302, 327, 343, 355
MspI	CCGG	5 cut(s)	128, 139, 245, 296, 382
MspR9I	CCNGG	5 cut(s)	158, 245, 296, 382, 383
MvaI	CCWGG	1 cut(s)	158
MwoI	GCNNNNNNNGC	3 cut(s)	65, 288, 313
NciI	CCSGG	4 cut(s)	245, 296, 382, 383
NcoI	CCATGG	1 cut(s)	217
NdeII	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	3 cut(s)	162, 163, 183
NmuCI	GTSAC	2 cut(s)	75, 130
PcsI	WCGNNNNNNNCGW	2 cut(s)	206, 209
PkrI	GCNGC	2 cut(s)	17, 47
Ple19I	CGATCG	1 cut(s)	404
PleI	GAGTC	2 cut(s)	82, 161
PpsI	GAGTC	2 cut(s)	82, 161
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	156
PspFI	CCCAGC	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	3 cut(s)	162, 163, 183
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	5 cut(s)	89, 136, 160, 161, 384
PspPPI	RGGWCCY	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	261
PvuI	CGATCG	1 cut(s)	404
Rsr2I	CGGWCCG	1 cut(s)	136
RsrII	CGGWCCG	1 cut(s)	136
SatI	GCNGC	2 cut(s)	16, 46
Sau3AI	GATC	6 cut(s)	176, 247, 261, 272, 345, 401
Sau96I	GGNCC	5 cut(s)	89, 136, 160, 161, 384
SchI	GAGTC	2 cut(s)	83, 162
ScrFI	CCNGG	5 cut(s)	158, 245, 296, 382, 383
SduI	GDGCHC	2 cut(s)	164, 382
SetI	ASST	4 cut(s)	55, 94, 203, 305
SfaNI	GCATC	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	127
SinI	GGWCC	2 cut(s)	89, 136
SmaI	CCCGGG	1 cut(s)	383
SrfI	GCCCGGGC	1 cut(s)	383
SsiI	CCGC	3 cut(s)	46, 322, 330
SspMI	CTAG	2 cut(s)	8, 54
StyD4I	CCNGG	5 cut(s)	156, 243, 294, 380, 381
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	136, 396
TaiI	ACGT	2 cut(s)	203, 305
TaqI	TCGA	3 cut(s)	212, 275, 357
TauI	GCSGC	1 cut(s)	48
TseFI	GTSAC	2 cut(s)	75, 130
TseI	GCWGC	1 cut(s)	15
Tsp45I	GTSAC	2 cut(s)	75, 130
TspGWI	ACGGA	1 cut(s)	338
TspMI	CCCGGG	1 cut(s)	381
VpaK11BI	GGWCC	2 cut(s)	89, 136
XmaI	CCCGGG	1 cut(s)	381
XspI	CTAG	2 cut(s)	8, 54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.