Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Forward (+)

13485352 .. 13488528

Gene Structure 3177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGTACTCATCGCTGAGCTGATGTGTGGGTTGAAGAAGGGGAGCGTTGTGGAGCTAACCCTGGTCACTGGGATAGGCTTCGAGATTGATCAGATCGAACTGCCAAAGAATTATCCTATGTTTCTTCTTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTCAGGGATCCGACGTGAAACTCTTCTATGGGGCCAGAAATCTTGACAGAATGGCTTATCAGGGGTTTGGTCTGATGATTGATACAATTTGTGGTCAATTTGGACTTACTGTGTTTAGCGGAGGGCTGCAGAGCGAATCAAGAAGAGTAGTAAATGGTGGAGAGATGGGTTCAGCCTTGACAACAGCGGGATCAATGTATATGATTGAAGGTGAGAAGGGAATTTCGTATATGCATTTGTTTGTTGAGCATGAAAATGTTACAGACAGTAATTGGAGTTGCCTTGCAGAGGGCATTACCATTATTTTCATACATCCTGGAGCTTTCAATATTCATCACAAATTAAATGTTCTTGGAGTGGATTTGGAAAAGGTGGCAGAAATAGCAACAACATCATCTGCTTTGAAAGAGGAAGAGATCAAGCTGCGTGTCAAAATAGCAGGGCATATCTCTAGCATTTCCCAGCTTTGTGCTCAATACAACAGCAGAGGAATATCAATTGCCCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

230

Amino Acids

24.85

Weight (kDa)

5.68

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	300, 368
AclWI	GGATC	4 cut(s)	148, 183, 196, 379
AcsI	RAATTY	1 cut(s)	402
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	469
AgsI	TTSAA	4 cut(s)	34, 389, 508, 586
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	60, 496
AluBI	AGCT	5 cut(s)	19, 55, 503, 604, 646
AluI	AGCT	5 cut(s)	19, 55, 503, 604, 646
Alw21I	GWGCWC	1 cut(s)	655
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	148, 183, 196, 379
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	307, 604
ApoI	RAATTY	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	404
BamHI	GGATCC	1 cut(s)	188
Bbv12I	GWGCWC	1 cut(s)	655
BbvI	GCAGC	2 cut(s)	294, 591
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	62, 498
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	633, 691
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	308, 605
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	2 cut(s)	309, 606
Bme1390I	CCNGG	2 cut(s)	62, 498
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	190, 214
BmrFI	CCNGG	2 cut(s)	62, 498
BmrI	ACTGGG	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	78
BpmI	CTGGAG	1 cut(s)	519
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	469
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	62, 498
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	493
BseLI	CCNNNNNNNGG	1 cut(s)	469
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	294, 591
BseYI	CCCAGC	1 cut(s)	642
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	469
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	655
Bsp143I	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	2 cut(s)	300, 368
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	190, 214
BspMAI	CTGCAG	1 cut(s)	312
BspPI	GGATC	4 cut(s)	148, 183, 196, 379
BspTNI	GGTCTC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
Bst2UI	CCWGG	2 cut(s)	62, 498
Bst4CI	ACNGT	2 cut(s)	292, 449
Bst6I	CTCTTC	3 cut(s)	209, 319, 588
BstDEI	CTNAG	1 cut(s)	15
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstF5I	GGATG	1 cut(s)	493
BstKTI	GATC	6 cut(s)	91, 96, 143, 191, 374, 600
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
BstMWI	GCNNNNNNNGC	1 cut(s)	563
BstNI	CCWGG	2 cut(s)	62, 498
BstSCI	CCNGG	2 cut(s)	60, 496
BstSFI	CTRYAG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	294, 591
BstX2I	RGATCY	2 cut(s)	140, 188
BstYI	RGATCY	2 cut(s)	140, 188
BsuRI	GGCC	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	493
BtsIMutI	CAGTG	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	431
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	6 cut(s)	90, 95, 142, 190, 373, 599
DpnII	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
Eam1104I	CTCTTC	3 cut(s)	209, 319, 588
EarI	CTCTTC	3 cut(s)	209, 319, 588
Eco31I	GGTCTC	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoRII	CCWGG	2 cut(s)	60, 496
EcoT22I	ATGCAT	1 cut(s)	417
FaeI	CATG	1 cut(s)	434
FaiI	YATR	9 cut(s)	119, 210, 381, 383, 411, 413, 432, 491, 627
FatI	CATG	1 cut(s)	430
FauI	CCCGC	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	308, 605
FokI	GGATG	1 cut(s)	480
Fsp4HI	GCNGC	2 cut(s)	308, 605
FspBI	CTAG	2 cut(s)	633, 691
GluI	GCNGC	2 cut(s)	308, 605
GsaI	CCCAGC	1 cut(s)	646
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	215
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	434
HinfI	GANTC	2 cut(s)	147, 317
HphI	GGTGA	1 cut(s)	404
Hpy188I	TCNGA	4 cut(s)	93, 159, 193, 255
Hpy188III	TCNNGA	4 cut(s)	82, 144, 224, 321
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	31, 383, 391
HpyCH4III	ACNGT	2 cut(s)	292, 449
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	310, 415, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	563
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
LmnI	GCTCC	3 cut(s)	42, 52, 500
Lsp1109I	GCAGC	2 cut(s)	294, 591
MaeI	CTAG	2 cut(s)	633, 691
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	2 cut(s)	64, 439
MalI	GATC	6 cut(s)	90, 95, 142, 190, 373, 599
MboI	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
MboII	GAAGA	5 cut(s)	46, 116, 196, 336, 605
MfeI	CAATTG	1 cut(s)	678
MflI	RGATCY	2 cut(s)	140, 188
MhlI	GDGCHC	1 cut(s)	655
MluCI	AATT	7 cut(s)	109, 267, 278, 402, 451, 521, 678
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	296, 463, 583, 662
Mph1103I	ATGCAT	1 cut(s)	417
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	2 cut(s)	174, 524
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	368
MspR9I	CCNGG	2 cut(s)	62, 498
MunI	CAATTG	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	62, 498
MwoI	GCNNNNNNNGC	1 cut(s)	563
NdeII	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
NlaIII	CATG	1 cut(s)	434
NlaIV	GGNNCC	2 cut(s)	190, 214
NmuCI	GTSAC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	417
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	147, 317
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	309, 606
Psp6I	CCWGG	2 cut(s)	60, 496
PspFI	CCCAGC	1 cut(s)	642
PspGI	CCWGG	2 cut(s)	60, 496
PspN4I	GGNNCC	2 cut(s)	190, 214
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	140, 188
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	435
SaqAI	TTAA	2 cut(s)	174, 524
SatI	GCNGC	2 cut(s)	308, 605
Sau3AI	GATC	6 cut(s)	88, 93, 140, 188, 371, 597
Sau96I	GGNCC	1 cut(s)	213
ScrFI	CCNGG	2 cut(s)	62, 498
SduI	GDGCHC	1 cut(s)	655
SetI	ASST	9 cut(s)	21, 57, 155, 198, 394, 505, 555, 606, 648
SfcI	CTRYAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	435
Sse9I	AATT	7 cut(s)	109, 267, 278, 402, 451, 521, 678
SsiI	CCGC	2 cut(s)	300, 368
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	633, 691
StyD4I	CCNGG	2 cut(s)	60, 496
TaaI	ACNGT	2 cut(s)	292, 449
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	81, 96
TasI	AATT	7 cut(s)	109, 267, 278, 402, 451, 521, 678
TfiI	GAWTC	2 cut(s)	147, 317
Tru1I	TTAA	2 cut(s)	174, 524
Tru9I	TTAA	2 cut(s)	174, 524
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	307, 604
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	3 cut(s)	447, 478, 503
TspRI	CASTG	1 cut(s)	73
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	633, 691
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.