RLG00000013719

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0002199
Physical Location & Seq
Reverse (-)
36570748 .. 36571820
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013719

Sequence Viewer

Length: 333 bp
ATGGTACTCATCGCTGAGCTGTTGTGTGGGTTGAAGAAGGGGAGCGTTGTGGAGCTAACCCAGATCACGGGGATAGGCTTCGAGATTGATCAGATCGAACCGCCAGAGAATTATCCTACATTTCTTATTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTATAATGCTGATAAGGGATCCGACGTGAAACTCTTTTATGGGTCCAGAAATCTTGACAGAATGGCTTATCAGTGGAAGGCTGCAGAGAGAATCAAGAAGAGTAGTACATGGTGGAGAGATGGATTCAGCCTTGGCAACAGTGGGATCAATGTATACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

7.81

Isoelectric Point (pI)

20.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 324
AciI CCGC 1 cut(s) 101
AclWI GGATC 4 cut(s) 148, 183, 196, 323
AfaI GTAC 2 cut(s) 6, 277
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 34
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 2 cut(s) 19, 55
AluI AGCT 2 cut(s) 19, 55
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 4 cut(s) 148, 183, 196, 323
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 213
AvaII GGWCC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 284
BclI TGATCA 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 159
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 252
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 213
BmgBI CACGTC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 190, 214
Bpu1102I GCTNAGC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 6
BseXI GCAGC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 67
BsmAI GTCTC 1 cut(s) 159
Bso31I GGTCTC 1 cut(s) 159
Bsp143I GATC 6 cut(s) 63, 88, 93, 140, 188, 315
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 190, 214
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 4 cut(s) 148, 183, 196, 323
BspTNI GGTCTC 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 6 cut(s) 63, 88, 93, 140, 188, 315
BssNAI GTATAC 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 263
BstDEI CTNAG 1 cut(s) 15
BstKTI GATC 6 cut(s) 66, 91, 96, 143, 191, 318
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 6 cut(s) 63, 88, 93, 140, 188, 315
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 238
BstX2I RGATCY 2 cut(s) 140, 188
BstYI RGATCY 2 cut(s) 140, 188
BstZ17I GTATAC 1 cut(s) 325
BtrI CACGTC 1 cut(s) 196
BtsIMutI CAGTG 2 cut(s) 248, 316
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 153
Csp6I GTAC 2 cut(s) 5, 276
CviAII CATG 1 cut(s) 279
CviJI RGCY 6 cut(s) 19, 55, 78, 236, 251, 300
CviKI_1 RGCY 6 cut(s) 19, 55, 78, 236, 251, 300
CviQI GTAC 2 cut(s) 5, 276
DdeI CTNAG 1 cut(s) 15
DpnI GATC 6 cut(s) 65, 90, 95, 142, 190, 317
DpnII GATC 6 cut(s) 63, 88, 93, 140, 188, 315
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 301
Eco31I GGTCTC 1 cut(s) 159
Eco47I GGWCC 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 282
FaiI YATR 4 cut(s) 174, 210, 280, 325
FatI CATG 1 cut(s) 278
FbaI TGATCA 1 cut(s) 88
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 1 cut(s) 252
Fsp4HI GCNGC 1 cut(s) 252
GluI GCNGC 1 cut(s) 252
HgaI GACGC 1 cut(s) 153
Hin1II CATG 1 cut(s) 282
HinfI GANTC 3 cut(s) 147, 261, 294
Hpy166II GTNNAC 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 93, 159, 193
Hpy188III TCNNGA 5 cut(s) 82, 144, 216, 224, 265
Hpy8I GTNNAC 1 cut(s) 325
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 2 cut(s) 31, 241
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 254
HpyF3I CTNAG 1 cut(s) 15
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 88
Kzo9I GATC 6 cut(s) 63, 88, 93, 140, 188, 315
LmnI GCTCC 2 cut(s) 42, 52
LpnPI CCDG 6 cut(s) 74, 117, 129, 136, 153, 229
Lsp1109I GCAGC 1 cut(s) 238
MaeII ACGT 1 cut(s) 195
MalI GATC 6 cut(s) 65, 90, 95, 142, 190, 317
MboI GATC 6 cut(s) 63, 88, 93, 140, 188, 315
MboII GAAGA 2 cut(s) 46, 280
MflI RGATCY 2 cut(s) 140, 188
MluCI AATT 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 216
MseI TTAA 1 cut(s) 331
NdeII GATC 6 cut(s) 63, 88, 93, 140, 188, 315
NlaIII CATG 1 cut(s) 282
NlaIV GGNNCC 2 cut(s) 190, 214
PfeI GAWTC 3 cut(s) 147, 261, 294
PkrI GCNGC 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 190, 214
PspPI GGNCC 1 cut(s) 213
PstI CTGCAG 1 cut(s) 256
PsuI RGATCY 2 cut(s) 140, 188
RsaI GTAC 2 cut(s) 6, 277
RsaNI GTAC 2 cut(s) 5, 276
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 6 cut(s) 63, 88, 93, 140, 188, 315
Sau96I GGNCC 1 cut(s) 213
SetI ASST 4 cut(s) 21, 57, 155, 198
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 213
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 101
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 81, 96
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 147, 261, 294
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 2 cut(s) 248, 316
TseI GCWGC 1 cut(s) 251
TspRI CASTG 2 cut(s) 248, 316
VpaK11BI GGWCC 1 cut(s) 213
XmiI GTMKAC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.