Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Reverse (-)

37167775 .. 37171464

Gene Structure 3690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49616

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAACCCTTTTATCTTCATCGTCCTCTTCCCTCACTCCTCAATCTTCTCGCTAACAGAACGCTTTTGCTTCATGGTCCATCGCTGAGCTGCTTGTGCGGGTTGAAGAAGGGGGACGTTGTGGAGCTAACCCAGGATATGGGGAAAGGCTTCGAGGCTAATCAGATCCAACCGTTGGAAAATTATGCTACGGTTCTAATTTTCACAACGGGATCTGGAATCAGTCCAATCAGGTCTCTGATTGAATCAGGGTTTAATGTTGATAAGGGATTCGACGTGAAGCTCTTTTATGGGGCCAGAAACCTTGACAGAATGGCTTATCAGTATGGGTTTGTATGCTGCATTAATCGCGTTCGCCAAAAGTCAAACGACTGCAATCACAGGGCTTTTGATTTGAAGGATGTTAAAAAGATGAAGATGAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

142

Amino Acids

16.07

Weight (kDa)

9.3

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	139, 175
AccII	CGCG	1 cut(s)	351
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	160, 220
AfiI	CCNNNNNNNGG	2 cut(s)	139, 175
AgsI	TTSAA	3 cut(s)	106, 245, 397
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	3 cut(s)	90, 127, 283
AluI	AGCT	3 cut(s)	90, 127, 283
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	2 cut(s)	160, 220
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	90, 339
AseI	ATTAAT	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	77, 294
AvaII	GGWCC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	77, 326
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	240
BisI	GCNGC	2 cut(s)	91, 340
BlpI	GCTNAGC	1 cut(s)	86
BlsI	GCNGC	2 cut(s)	92, 341
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	77, 294
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	1 cut(s)	134
Bpu1102I	GCTNAGC	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 175
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	406
BseLI	CCNNNNNNNGG	2 cut(s)	139, 175
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	77, 326
Bsh1236I	CGCG	1 cut(s)	351
BshFI	GGCC	1 cut(s)	296
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	139, 175
BsmAI	GTCTC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	296
Bso31I	GGTCTC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	165, 212
Bsp1720I	GCTNAGC	1 cut(s)	86
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	296
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	351
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	160, 220
BspTNI	GGTCTC	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	2 cut(s)	165, 212
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	174, 193
Bst6I	CTCTTC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	406
BstFNI	CGCG	1 cut(s)	351
BstKTI	GATC	2 cut(s)	168, 215
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	2 cut(s)	165, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 348
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstUI	CGCG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	77, 326
BstX2I	RGATCY	2 cut(s)	165, 212
BstYI	RGATCY	2 cut(s)	165, 212
BsuRI	GGCC	1 cut(s)	296
BtgZI	GCGATG	1 cut(s)	66
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	406
Cfr13I	GGNCC	2 cut(s)	77, 294
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	8 cut(s)	90, 127, 150, 158, 283, 296, 317, 386
CviKI_1	RGCY	8 cut(s)	90, 127, 150, 158, 283, 296, 317, 386
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	167, 214
DpnII	GATC	2 cut(s)	165, 212
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	240
Eco47I	GGWCC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	132
FaeI	CATG	1 cut(s)	77
FaiI	YATR	6 cut(s)	75, 140, 186, 291, 327, 337
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	1 cut(s)	73
FauI	CCCGC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	91, 340
FokI	GGATG	1 cut(s)	413
Fsp4HI	GCNGC	2 cut(s)	91, 340
GluI	GCNGC	2 cut(s)	91, 340
HaeIII	GGCC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	4 cut(s)	219, 245, 270, 421
Hpy188I	TCNGA	2 cut(s)	165, 240
Hpy188III	TCNNGA	1 cut(s)	216
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	103, 391
HpyCH4III	ACNGT	2 cut(s)	174, 193
HpyCH4IV	ACGT	2 cut(s)	117, 276
HpyCH4V	TGCA	2 cut(s)	342, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 348
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	2 cut(s)	117, 276
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	165, 212
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	7 cut(s)	119, 146, 201, 217, 234, 310, 367
Lsp1109I	GCAGC	2 cut(s)	77, 326
MaeII	ACGT	2 cut(s)	117, 276
MalI	GATC	2 cut(s)	167, 214
MboI	GATC	2 cut(s)	165, 212
MboII	GAAGA	5 cut(s)	8, 20, 38, 118, 427
MflI	RGATCY	2 cut(s)	165, 212
MluCI	AATT	2 cut(s)	181, 198
MmeI	TCCRAC	2 cut(s)	156, 193
MnlI	CCTC	4 cut(s)	36, 43, 50, 148
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	255, 345, 405
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MvnI	CGCG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	96, 348
NdeII	GATC	2 cut(s)	165, 212
NlaIII	CATG	1 cut(s)	77
NlaIV	GGNNCC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	219, 245, 270, 421
PflMI	CCANNNNNTGG	2 cut(s)	139, 175
PkrI	GCNGC	2 cut(s)	92, 341
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	2 cut(s)	77, 294
PsuI	RGATCY	2 cut(s)	165, 212
SaqAI	TTAA	3 cut(s)	255, 345, 405
SatI	GCNGC	2 cut(s)	91, 340
Sau3AI	GATC	2 cut(s)	165, 212
Sau96I	GGNCC	2 cut(s)	77, 294
ScrFI	CCNGG	1 cut(s)	134
SetI	ASST	7 cut(s)	92, 120, 129, 236, 279, 285, 306
SinI	GGWCC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	181, 198
SsiI	CCGC	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	132
TaaI	ACNGT	2 cut(s)	174, 193
TaiI	ACGT	2 cut(s)	120, 279
TaqI	TCGA	2 cut(s)	153, 273
TasI	AATT	2 cut(s)	181, 198
TfiI	GAWTC	4 cut(s)	219, 245, 270, 421
Tru1I	TTAA	3 cut(s)	255, 345, 405
Tru9I	TTAA	3 cut(s)	255, 345, 405
TseI	GCWGC	2 cut(s)	90, 339
TspDTI	ATGAA	4 cut(s)	8, 17, 62, 428
Van91I	CCANNNNNTGG	2 cut(s)	139, 175
VpaK11BI	GGWCC	1 cut(s)	77
VspI	ATTAAT	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.