Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Reverse (-)

37696542 .. 37701397

Gene Structure 4856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGTACTCATCGCTGAGCTGCTGTGTGGGTTGAAGAAGGGGAGGGTTGTGGAGCTAACCCAGATCAAGGGGATAGGCTTCGAGATTGATCAGATCAAACCGCCAGAGAATTATCCTACGTTTCTTATTTTCACAACGGGATCTAGGATCGGGTCTCTGATTGCGTCAGGGTATAATGCTGATAAGGGATCCGACGTGAAACTCTTCTATGGGTCCAGAAATCTTGACAGAATGGCTTATCAGCACTTGGCCACTACCATCATCGACGTCCACTGCAGCCCCGACCATGGTAAACAACAAGGCCAGAACCTGCCAAGGCACGACGCCGTCACCGATAGGAGATGGCCAACCGATTTGCTGTCAAACCTCGTCATCACCATCGATCGTAGAAACAAAGCCGTCATCGAAGCTATGGTTTGTGGGGTTTTGGTGTATGGGTCTAGGAGAGCTTTTGCTGTGGAGGGTGTGGTCAATGCAAGCTATGGGATTGTTGACAAGTGCATATTAACGTTCAAAAATGCTTGGCCGAAGACGCTGCTTGTTCTTCAGGTTTTTAATGAGCAGGGTTTGATTTTGGCGGTGCCTTCGATTACCACACTATGGCCTTGGAAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

206

Amino Acids

22.8

Weight (kDa)

9.06

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	580
AccB7I	CCANNNNNTGG	1 cut(s)	600
AciI	CCGC	2 cut(s)	101, 578
AclI	AACGTT	1 cut(s)	509
AclWI	GGATC	4 cut(s)	148, 155, 183, 196
AcoI	YGGCCR	3 cut(s)	249, 344, 524
AcuI	CTGAAG	1 cut(s)	530
AcyI	GRCGYC	2 cut(s)	267, 324
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	3 cut(s)	67, 287, 600
AgsI	TTSAA	2 cut(s)	34, 514
AjiI	CACGTC	1 cut(s)	196
AluBI	AGCT	5 cut(s)	19, 55, 410, 449, 480
AluI	AGCT	5 cut(s)	19, 55, 410, 449, 480
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	148, 155, 183, 196
AlwNI	CAGNNNCTG	1 cut(s)	310
AoxI	GGCC	5 cut(s)	249, 301, 344, 524, 602
ApeKI	GCWGC	3 cut(s)	19, 276, 535
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	322, 367
AvaII	GGWCC	1 cut(s)	213
BalI	TGGCCA	2 cut(s)	251, 346
BamHI	GGATCC	1 cut(s)	188
BanI	GGYRCC	1 cut(s)	580
BbsI	GAAGAC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	6, 288, 522
BccI	CCATC	3 cut(s)	266, 336, 386
BceAI	ACGGC	2 cut(s)	311, 383
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	144, 441
BfmI	CTRYAG	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	318
BisI	GCNGC	3 cut(s)	20, 277, 536
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	3 cut(s)	21, 278, 537
Bme18I	GGWCC	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	3 cut(s)	190, 214, 582
BpiI	GAAGAC	1 cut(s)	536
Bpu1102I	GCTNAGC	1 cut(s)	15
Bsa29I	ATCGAT	1 cut(s)	381
BsaHI	GRCGYC	2 cut(s)	267, 324
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	286, 314, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 287, 600
BseCI	ATCGAT	1 cut(s)	381
BseDI	CCNNGG	3 cut(s)	286, 314, 605
BseLI	CCNNNNNNNGG	3 cut(s)	67, 287, 600
BseMII	CTCAG	1 cut(s)	6
BseXI	GCAGC	3 cut(s)	6, 288, 522
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	5 cut(s)	251, 303, 346, 526, 604
BshNI	GGYRCC	1 cut(s)	580
BshVI	ATCGAT	1 cut(s)	381
BsiEI	CGRYCG	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	67, 287, 600
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	5 cut(s)	251, 303, 346, 526, 604
Bso31I	GGTCTC	1 cut(s)	159
Bsp143I	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
Bsp1720I	GCTNAGC	1 cut(s)	15
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	2 cut(s)	101, 578
BspANI	GGCC	5 cut(s)	251, 303, 346, 526, 604
BspCNI	CTCAG	1 cut(s)	7
BspDI	ATCGAT	1 cut(s)	381
BspLI	GGNNCC	3 cut(s)	190, 214, 582
BspMAI	CTGCAG	1 cut(s)	278
BspMI	ACCTGC	1 cut(s)	318
BspPI	GGATC	4 cut(s)	148, 155, 183, 196
BspT107I	GGYRCC	1 cut(s)	580
BspTNI	GGTCTC	1 cut(s)	159
BssECI	CCNNGG	3 cut(s)	286, 314, 605
BssMI	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
BssNI	GRCGYC	2 cut(s)	267, 324
BssT1I	CCWWGG	3 cut(s)	286, 314, 605
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	2 cut(s)	267, 324
BstC8I	GCNNGC	1 cut(s)	478
BstDEI	CTNAG	1 cut(s)	15
BstDSI	CCRYGG	1 cut(s)	286
BstKTI	GATC	7 cut(s)	66, 91, 96, 143, 150, 191, 385
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	3 cut(s)	6, 288, 522
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	140, 188
BstYI	RGATCY	2 cut(s)	140, 188
Bsu15I	ATCGAT	1 cut(s)	381
BsuRI	GGCC	5 cut(s)	251, 303, 346, 526, 604
BsuTUI	ATCGAT	1 cut(s)	381
BtgI	CCRYGG	1 cut(s)	286
BtrI	CACGTC	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
BveI	ACCTGC	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	478
CaiI	CAGNNNCTG	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	213
ClaI	ATCGAT	1 cut(s)	381
CseI	GACGC	3 cut(s)	153, 332, 541
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	287
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	7 cut(s)	65, 90, 95, 142, 149, 190, 384
DpnII	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
EaeI	YGGCCR	3 cut(s)	249, 344, 524
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	3 cut(s)	286, 314, 605
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	530
EcoT14I	CCWWGG	3 cut(s)	286, 314, 605
ErhI	CCWWGG	3 cut(s)	286, 314, 605
FaeI	CATG	1 cut(s)	290
FaiI	YATR	9 cut(s)	174, 210, 288, 413, 435, 483, 503, 601, 616
FatI	CATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	20, 277, 536
Fsp4HI	GCNGC	3 cut(s)	20, 277, 536
FspBI	CTAG	2 cut(s)	144, 441
GluI	GCNGC	3 cut(s)	20, 277, 536
HaeIII	GGCC	5 cut(s)	251, 303, 346, 526, 604
HgaI	GACGC	3 cut(s)	153, 332, 541
Hin1I	GRCGYC	2 cut(s)	267, 324
Hin1II	CATG	1 cut(s)	290
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HphI	GGTGA	2 cut(s)	322, 367
Hpy166II	GTNNAC	3 cut(s)	271, 293, 493
Hpy188I	TCNGA	3 cut(s)	93, 159, 193
Hpy188III	TCNNGA	3 cut(s)	82, 216, 224
Hpy8I	GTNNAC	3 cut(s)	271, 293, 493
Hpy99I	CGWCG	3 cut(s)	197, 269, 326
HpyAV	CCTTC	3 cut(s)	31, 594, 604
HpyCH4IV	ACGT	4 cut(s)	119, 195, 267, 509
HpyCH4V	TGCA	3 cut(s)	276, 476, 501
HpyF10VI	GCNNNNNNNGC	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	4 cut(s)	119, 195, 267, 509
Hsp92I	GRCGYC	2 cut(s)	267, 324
Hsp92II	CATG	1 cut(s)	290
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	8 cut(s)	74, 117, 153, 229, 317, 323, 533, 548
Lsp1109I	GCAGC	3 cut(s)	6, 288, 522
MaeI	CTAG	2 cut(s)	144, 441
MaeII	ACGT	4 cut(s)	119, 195, 267, 509
MaeIII	GTNAC	1 cut(s)	328
MalI	GATC	7 cut(s)	65, 90, 95, 142, 149, 190, 384
MboI	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
MboII	GAAGA	4 cut(s)	46, 196, 536, 541
MflI	RGATCY	2 cut(s)	140, 188
MlsI	TGGCCA	2 cut(s)	251, 346
MluCI	AATT	1 cut(s)	109
MluNI	TGGCCA	2 cut(s)	251, 346
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	3 cut(s)	36, 377, 454
Mox20I	TGGCCA	2 cut(s)	251, 346
MroXI	GAANNNNTTC	1 cut(s)	203
MscI	TGGCCA	2 cut(s)	251, 346
MseI	TTAA	2 cut(s)	506, 555
Msp20I	TGGCCA	2 cut(s)	251, 346
MwoI	GCNNNNNNNGC	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
NlaIII	CATG	1 cut(s)	290
NlaIV	GGNNCC	3 cut(s)	190, 214, 582
NmuCI	GTSAC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	203
PflFI	GACNNNGTC	1 cut(s)	326
PflMI	CCANNNNNTGG	1 cut(s)	600
PkrI	GCNGC	3 cut(s)	21, 278, 537
Ple19I	CGATCG	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	190, 214, 582
PspPI	GGNCC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	310
PsuI	RGATCY	2 cut(s)	140, 188
PsyI	GACNNNGTC	1 cut(s)	326
PvuI	CGATCG	1 cut(s)	385
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	506, 555
SatI	GCNGC	3 cut(s)	20, 277, 536
Sau3AI	GATC	7 cut(s)	63, 88, 93, 140, 147, 188, 382
Sau96I	GGNCC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	213
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	101, 578
SspMI	CTAG	2 cut(s)	144, 441
StyI	CCWWGG	3 cut(s)	286, 314, 605
TaiI	ACGT	4 cut(s)	122, 198, 270, 512
TaqI	TCGA	5 cut(s)	81, 264, 381, 405, 587
TasI	AATT	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	506, 555
Tru9I	TTAA	2 cut(s)	506, 555
TscAI	CASTG	1 cut(s)	278
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	3 cut(s)	19, 276, 535
Tsp45I	GTSAC	1 cut(s)	328
TspRI	CASTG	1 cut(s)	278
Tth111I	GACNNNGTC	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	144, 441
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.