RchiOBHm_Chr2g0114941
MYB Family

SANT/Myb-like domain of DAMP1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002199
Physical Location & Seq
Forward (+)
26852682 .. 26854240
1559 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48815

Sequence Viewer

Length: 510 bp
ATGGAACAAGGGTTTAATGCTGATAAGCGATCCGACGTGAAGCTCTTCTATGGGGTCAGAAACCTTGACAATATGGCTTATCAGATCAATTGGCAGTGGCTTCCTTTTACGAATTCTGCTCAGAAAGATGACTTAAAGCTTTACCATTGGGTGAGTTTTTGTACTCCGAAGGTGGCCTCTCTTCCTATGGATCTGTGCATGGATGTTATCAGATACATTGACGAGGAGTATGAAAAGTATTTGACTGATCCTTTTGATCTCCGCTTCATTGTGATGGCAGACAGGTTCCCATCATCGTGTATTGTGGAGGAATTAATTGAATGGATTCCTGTGTGGGTTTGTAGTTTCCAGTATGGTAGCTTAGTTGAGGAGGCTGACAAGGACGCTCTGGTTTACATTTACAAGACGGCTGCCAGTGGATTCTCTGCTAAGCTCACTCCTCAACAACTCGCCGAAATCTCAAATAAGCCCTTCTCTCTTTGCCTGTTCATGATTTATATGATTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

169

Amino Acids

19.83

Weight (kDa)

4.6

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I9 PF05922 120 - 157 5.1e-06 Peptidase inhibitor I9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 262
AclWI GGATC 3 cut(s) 24, 198, 242
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 1 cut(s) 320
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 4 cut(s) 43, 139, 360, 433
AluI AGCT 4 cut(s) 43, 139, 360, 433
AlwI GGATC 3 cut(s) 24, 198, 242
AoxI GGCC 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 410
ApoI RAATTY 1 cut(s) 112
AseI ATTAAT 1 cut(s) 314
Asp700I GAANNNNTTC 2 cut(s) 44, 324
AsuHPI GGTGA 1 cut(s) 163
BbvI GCAGC 1 cut(s) 397
BccI CCATC 2 cut(s) 268, 298
BceAI ACGGC 1 cut(s) 423
BisI GCNGC 1 cut(s) 411
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 1 cut(s) 412
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 287
Bpu1102I GCTNAGC 1 cut(s) 429
Bse1I ACTGG 2 cut(s) 349, 414
BseGI GGATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 349, 414
BseRI GAGGAG 3 cut(s) 239, 383, 429
BseXI GCAGC 1 cut(s) 397
BshFI GGCC 1 cut(s) 176
BsnI GGCC 1 cut(s) 176
Bsp143I GATC 5 cut(s) 29, 84, 190, 247, 256
Bsp1720I GCTNAGC 1 cut(s) 429
BspACI CCGC 1 cut(s) 262
BspANI GGCC 1 cut(s) 176
BspCNI CTCAG 1 cut(s) 133
BspHI TCATGA 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 287
BspPI GGATC 3 cut(s) 24, 198, 242
BspQI GCTCTTC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 349, 414
BssMI GATC 5 cut(s) 29, 84, 190, 247, 256
Bst6I CTCTTC 2 cut(s) 50, 186
BstDEI CTNAG 3 cut(s) 120, 361, 429
BstF5I GGATG 1 cut(s) 208
BstKTI GATC 5 cut(s) 32, 87, 193, 250, 259
BstMBI GATC 5 cut(s) 29, 84, 190, 247, 256
BstV1I GCAGC 1 cut(s) 397
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 176
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 208
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 2 cut(s) 101, 421
CciI TCATGA 1 cut(s) 489
CseI GACGC 1 cut(s) 392
Csp6I GTAC 1 cut(s) 162
CviAII CATG 2 cut(s) 199, 490
CviQI GTAC 1 cut(s) 162
DdeI CTNAG 3 cut(s) 120, 361, 429
DpnI GATC 5 cut(s) 31, 86, 192, 249, 258
DpnII GATC 5 cut(s) 29, 84, 190, 247, 256
Eam1104I CTCTTC 2 cut(s) 50, 186
EarI CTCTTC 2 cut(s) 50, 186
EcoRI GAATTC 1 cut(s) 112
FaeI CATG 2 cut(s) 202, 493
FaiI YATR 9 cut(s) 51, 74, 188, 200, 231, 354, 491, 498, 500
FatI CATG 2 cut(s) 198, 489
Fnu4HI GCNGC 1 cut(s) 411
FokI GGATG 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 1 cut(s) 392
Hin1II CATG 2 cut(s) 202, 493
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 2 cut(s) 325, 420
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 394
Hpy188I TCNGA 7 cut(s) 34, 59, 84, 123, 168, 212, 509
Hpy188III TCNNGA 1 cut(s) 490
Hpy8I GTNNAC 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 2 cut(s) 163, 481
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 198
HpyF3I CTNAG 3 cut(s) 120, 361, 429
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 202, 493
Kzo9I GATC 5 cut(s) 29, 84, 190, 247, 256
LguI GCTCTTC 1 cut(s) 50
LpnPI CCDG 6 cut(s) 268, 342, 362, 374, 427, 497
Lsp1109I GCAGC 1 cut(s) 397
MaeII ACGT 1 cut(s) 36
MalI GATC 5 cut(s) 31, 86, 192, 249, 258
MboI GATC 5 cut(s) 29, 84, 190, 247, 256
MboII GAAGA 2 cut(s) 37, 173
MfeI CAATTG 1 cut(s) 88
MflI RGATCY 1 cut(s) 190
MluCI AATT 4 cut(s) 88, 112, 311, 315
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 187, 217, 301, 361, 364, 450
MroXI GAANNNNTTC 2 cut(s) 44, 324
MseI TTAA 3 cut(s) 15, 134, 314
MslI CAYNNNNRTG 2 cut(s) 272, 295
MunI CAATTG 1 cut(s) 88
NdeII GATC 5 cut(s) 29, 84, 190, 247, 256
NlaIII CATG 2 cut(s) 202, 493
NlaIV GGNNCC 1 cut(s) 287
PagI TCATGA 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 50
PdmI GAANNNNTTC 2 cut(s) 44, 324
PfeI GAWTC 2 cut(s) 325, 420
PkrI GCNGC 1 cut(s) 412
PshBI ATTAAT 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
RseI CAYNNNNRTG 2 cut(s) 272, 295
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 3 cut(s) 15, 134, 314
SatI GCNGC 1 cut(s) 411
Sau3AI GATC 5 cut(s) 29, 84, 190, 247, 256
SetI ASST 8 cut(s) 39, 45, 66, 141, 174, 287, 362, 435
SmiMI CAYNNNNRTG 2 cut(s) 272, 295
Sse9I AATT 4 cut(s) 88, 112, 311, 315
SsiI CCGC 1 cut(s) 262
TaiI ACGT 1 cut(s) 39
TasI AATT 4 cut(s) 88, 112, 311, 315
TatI WGTACW 1 cut(s) 161
TfiI GAWTC 2 cut(s) 325, 420
Tru1I TTAA 3 cut(s) 15, 134, 314
Tru9I TTAA 3 cut(s) 15, 134, 314
TscAI CASTG 2 cut(s) 101, 421
TseI GCWGC 1 cut(s) 410
TspDTI ATGAA 3 cut(s) 246, 256, 478
TspRI CASTG 2 cut(s) 101, 421
VspI ATTAAT 1 cut(s) 314
XapI RAATTY 1 cut(s) 112
XmnI GAANNNNTTC 2 cut(s) 44, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.