RchiOBHm_Chr7g0204021

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002199
Physical Location & Seq
Reverse (-)
21606383 .. 21606806
424 bp
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UTR
Exon/CDS
Intron
PRQ18259

Sequence Viewer

Length: 168 bp
ATGAATTCGATTGCTAACATGTTTCAATTTCTGTTCTGGAGTCTGATCAGGTCTCTGATTGAATCAGGGTTTAATGTTGATAAAGGATTCAATGTGAAGCTCTTCTATGGGGCCAGAAACCTTGACAAAATGGCTTATCAGGGTTGCATTTTCTTTTTCGATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

55

Amino Acids

6.47

Weight (kDa)

7.9

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 4
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 3 cut(s) 26, 62, 91
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 57
AoxI GGCC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 111
BclI TGATCA 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 111
BmiI GGNNCC 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 57
BshFI GGCC 1 cut(s) 113
BsmAI GTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 113
Bso31I GGTCTC 1 cut(s) 57
Bsp143I GATC 1 cut(s) 45
BspANI GGCC 1 cut(s) 113
BspLI GGNNCC 1 cut(s) 112
BspQI GCTCTTC 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 57
BssMI GATC 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 107
BstKTI GATC 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 57
BstMBI GATC 1 cut(s) 45
BstNSI RCATGY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 111
CviAII CATG 1 cut(s) 19
CviJI RGCY 3 cut(s) 100, 113, 134
CviKI_1 RGCY 3 cut(s) 100, 113, 134
DpnI GATC 1 cut(s) 47
DpnII GATC 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 57
EcoRI GAATTC 1 cut(s) 4
FaeI CATG 1 cut(s) 22
FaiI YATR 2 cut(s) 20, 108
FatI CATG 1 cut(s) 18
FbaI TGATCA 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 58
HaeIII GGCC 1 cut(s) 113
Hin1II CATG 1 cut(s) 22
HinfI GANTC 3 cut(s) 40, 62, 87
Hpy188I TCNGA 2 cut(s) 45, 57
Hpy188III TCNNGA 1 cut(s) 37
HpyCH4V TGCA 1 cut(s) 147
Hsp92II CATG 1 cut(s) 22
Ksp22I TGATCA 1 cut(s) 45
Kzo9I GATC 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 22, 34, 51, 125, 127
MalI GATC 1 cut(s) 47
MboI GATC 1 cut(s) 45
MboII GAAGA 1 cut(s) 94
MluCI AATT 2 cut(s) 4, 26
MlyI GAGTC 1 cut(s) 49
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 1 cut(s) 72
NdeII GATC 1 cut(s) 45
NlaIII CATG 1 cut(s) 22
NlaIV GGNNCC 1 cut(s) 112
NspI RCATGY 1 cut(s) 22
PciI ACATGT 1 cut(s) 18
PciSI GCTCTTC 1 cut(s) 107
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 62, 87
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
PscI ACATGT 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 1 cut(s) 72
Sau3AI GATC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 111
SchI GAGTC 1 cut(s) 49
SetI ASST 3 cut(s) 53, 102, 123
SgeI CNNG 7 cut(s) 31, 49, 61, 78, 126, 134, 152
Sse9I AATT 2 cut(s) 4, 26
TaqI TCGA 2 cut(s) 8, 159
TasI AATT 2 cut(s) 4, 26
TfiI GAWTC 2 cut(s) 62, 87
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.