Rmu_sc0004401.1_g000018

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004401.1
OG0002199
Physical Location & Seq
Reverse (-)
99794 .. 103037
3244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004401.1_g000018.1.cds

Sequence Viewer

Length: 357 bp
atggggaaaggcttcgagattgctctgatcgaaccgctggagaattatcttactgttctagttttcacaacgggatctggaataaggtctctgattgaattagggtttaatgttgataagggattcaatgtgaagctcttctatggggccagaaaccttgacagaatggcttatcagggattcagatttgtgttgttgcttgttatagcattgctgaattggatggaagaaagaatgcatccctttaatcaggttgattatagcaatcacaatttactggctattgcagctggtattaagcagaaacataatgttgatgatattgtgcaaaagtttcttccagaaagatatgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

118

Amino Acids

13.55

Weight (kDa)

6.83

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 82
AgsI TTSAA 2 cut(s) 98, 127
AluBI AGCT 2 cut(s) 136, 290
AluI AGCT 2 cut(s) 136, 290
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 1 cut(s) 82
AoxI GGCC 1 cut(s) 147
ApeKI GCWGC 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 11, 137
AspS9I GGNCC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 148
BmsI GCATC 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 209
BseGI GGATG 2 cut(s) 228, 238
BseMI GCAATG 1 cut(s) 209
BseNI ACTGG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 299
BshFI GGCC 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 93
BsmI GAATGC 1 cut(s) 240
BsnI GGCC 1 cut(s) 149
Bso31I GGTCTC 1 cut(s) 93
Bsp143I GATC 2 cut(s) 27, 74
BspACI CCGC 1 cut(s) 35
BspANI GGCC 1 cut(s) 149
BspLI GGNNCC 1 cut(s) 148
BspPI GGATC 1 cut(s) 82
BspQI GCTCTTC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 93
BsrDI GCAATG 1 cut(s) 209
BsrI ACTGG 1 cut(s) 282
BssMI GATC 2 cut(s) 27, 74
Bst4CI ACNGT 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 143
BstF5I GGATG 2 cut(s) 228, 238
BstKTI GATC 2 cut(s) 30, 77
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 2 cut(s) 27, 74
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstV1I GCAGC 1 cut(s) 299
BstX2I RGATCY 1 cut(s) 74
BstYI RGATCY 1 cut(s) 74
BsuRI GGCC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 228, 238
Cfr13I GGNCC 1 cut(s) 147
CviJI RGCY 6 cut(s) 12, 136, 149, 170, 281, 290
CviKI_1 RGCY 6 cut(s) 12, 136, 149, 170, 281, 290
DpnI GATC 2 cut(s) 29, 76
DpnII GATC 2 cut(s) 27, 74
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco31I GGTCTC 1 cut(s) 93
EcoT22I ATGCAT 1 cut(s) 240
FaiI YATR 5 cut(s) 144, 206, 261, 309, 351
FalI AAGNNNNNCTT 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 225, 235
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 59
GluI GCNGC 1 cut(s) 288
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 1 cut(s) 149
HinfI GANTC 2 cut(s) 123, 180
Hpy188I TCNGA 3 cut(s) 27, 93, 185
Hpy188III TCNNGA 3 cut(s) 16, 78, 341
HpyCH4III ACNGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 238, 287, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
Kzo9I GATC 2 cut(s) 27, 74
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 7 cut(s) 23, 63, 161, 163, 236, 263, 276
Lsp1109I GCAGC 1 cut(s) 299
LweI GCATC 1 cut(s) 247
MaeI CTAG 1 cut(s) 59
MalI GATC 2 cut(s) 29, 76
MboI GATC 2 cut(s) 27, 74
MboII GAAGA 3 cut(s) 130, 239, 329
MflI RGATCY 1 cut(s) 74
MluCI AATT 4 cut(s) 43, 98, 217, 271
Mph1103I ATGCAT 1 cut(s) 240
MroXI GAANNNNTTC 2 cut(s) 11, 137
MseI TTAA 3 cut(s) 108, 246, 297
MspA1I CMGCKG 2 cut(s) 37, 290
Mva1269I GAATGC 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 287
NdeII GATC 2 cut(s) 27, 74
NlaIV GGNNCC 1 cut(s) 148
NsiI ATGCAT 1 cut(s) 240
PciSI GCTCTTC 1 cut(s) 143
PctI GAATGC 1 cut(s) 240
PdmI GAANNNNTTC 2 cut(s) 11, 137
PfeI GAWTC 2 cut(s) 123, 180
PkrI GCNGC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 1 cut(s) 147
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 108, 246, 297
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 2 cut(s) 27, 74
Sau96I GGNCC 1 cut(s) 147
SetI ASST 5 cut(s) 89, 138, 159, 255, 292
SfaNI GCATC 1 cut(s) 247
Sse9I AATT 4 cut(s) 43, 98, 217, 271
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 59
TaaI ACNGT 1 cut(s) 55
TaqI TCGA 2 cut(s) 15, 30
TasI AATT 4 cut(s) 43, 98, 217, 271
TfiI GAWTC 2 cut(s) 123, 180
Tru1I TTAA 3 cut(s) 108, 246, 297
Tru9I TTAA 3 cut(s) 108, 246, 297
TseI GCWGC 1 cut(s) 287
XmnI GAANNNNTTC 2 cut(s) 11, 137
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.