Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002199

Physical Location & Seq

Genomic Coordinates Reverse (-)

37092075 .. 37095468

Gene Structure 3394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTACTCATCGCTGAGCTGATGTGTGGGTTGAAGAAGGGGAGCGTTGTGGAGCTAACCCTGGTCACGGGGATAGGCTTCGAGATTGATCAGATCGAACTGCCAAAGGATTATCCTATGTTTCTTCTTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTAAGGGATCCGACGTGAAACTCTTCTATGGGGCCAGAAATCTTGACAGAATGGCTTATCAGAGCGAATCAAGAAGAGTAGTAAATGGTGGAGAGATGGGTTCAGCCTTGACAACAGCGGGATCAATGTATATGATTGAAGGTGAGAAGGGAGTGAGTCATGGAAATAAGGCTAAACTTTTCATTCACGTGGCAGAAATAGCAACAACATCATCTGCTTTGAAAGAGGAAGAGATCAAGCTGCGTGTCAAAATAGCAGGGCATATCTCTAGCATTTCCCAGCTTTGTGCTCAATACAACAGCAGAGGAATATCAATTGCTCAGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_1

Protein Analysis

169

Amino Acids

18.15

Weight (kDa)

8.53

Isoelectric Point (pI)

40.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002199)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15140 AT1G15140 AT1G15140
fragaria_vesca	FvH4_4g26280
malus_domestica	MD13G1031300.v1.1 MD16G1033500.v1.1
prunus_persica	Prupe.1G320800_v2.0.a1
pyrus_communis	pycom13g02740 pycom16g02810
rosa_chinensis	RchiOBHm_Chr2g0114941 RchiOBHm_Chr2g0123901 RchiOBHm_Chr2g0151061 RchiOBHm_Chr4g0433881 RchiOBHm_Chr6g0253871 RchiOBHm_Chr6g0284911 RchiOBHm_Chr7g0204021
rosa_laevigata	RLG00000006720 RLG00000013719 RLG00000029252 RLG00000034168
rosa_multiflora	Rmu_sc0000352.1_g000003 Rmu_sc0001311.1_g000004 Rmu_sc0002503.1_g000009 Rmu_sc0002892.1_g000030 Rmu_sc0004401.1_g000018 Rmu_sc0005802.1_g000017 Rmu_sc0012206.1_g000005 Rmu_sc0018346.1_g000012
rosa_roxburghii	Rroxscaffold_1G00042190 Rroxscaffold_3G00228970 Rroxscaffold_3G00244410 Rroxscaffold_4G00329490 Rroxscaffold_4G00329740 Rroxscaffold_5G00375280
rosa_rugosa	Rorug01G0076300 Rorug04G0272100 Rorug07G0031500
rosa_samantha	Rh2BG316000 Rh2CG609700 Rh4BG334200 Rh4CG350000 Rh5CG508600
rosa_wichuraiana	Rw4G028330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	299
AclWI	GGATC	4 cut(s)	148, 183, 196, 310
AcvI	CACGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	6
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	34, 320, 403
AjiI	CACGTC	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	19, 55, 421, 463
AluI	AGCT	4 cut(s)	19, 55, 421, 463
Alw21I	GWGCWC	1 cut(s)	472
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	148, 183, 196, 310
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	421
Asp700I	GAANNNNTTC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	335
BamHI	GGATCC	1 cut(s)	188
BbrPI	CACGTG	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	450, 508
BisI	GCNGC	1 cut(s)	422
BlpI	GCTNAGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	62
BmgBI	CACGTC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	2 cut(s)	190, 214
BmrFI	CCNGG	1 cut(s)	62
Bpu1102I	GCTNAGC	1 cut(s)	15
BsaAI	YACGTR	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	60
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	408
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	215
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
Bsp1720I	GCTNAGC	1 cut(s)	15
BspACI	CCGC	1 cut(s)	299
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	190, 214
BspPI	GGATC	4 cut(s)	148, 183, 196, 310
BspTNI	GGTCTC	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	3 cut(s)	209, 250, 405
BstBAI	YACGTR	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	15, 501
BstKTI	GATC	6 cut(s)	91, 96, 143, 191, 305, 417
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	380
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstV1I	GCAGC	1 cut(s)	408
BstX2I	RGATCY	2 cut(s)	140, 188
BstYI	RGATCY	2 cut(s)	140, 188
BsuRI	GGCC	1 cut(s)	215
BtrI	CACGTC	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	213
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	1 cut(s)	5
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	9 cut(s)	19, 55, 78, 215, 236, 287, 353, 421, 463
CviKI_1	RGCY	9 cut(s)	19, 55, 78, 215, 236, 287, 353, 421, 463
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	2 cut(s)	15, 501
DpnI	GATC	6 cut(s)	90, 95, 142, 190, 304, 416
DpnII	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
Eam1104I	CTCTTC	3 cut(s)	209, 250, 405
EarI	CTCTTC	3 cut(s)	209, 250, 405
Eco31I	GGTCTC	1 cut(s)	159
Eco72I	CACGTG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	344
FaiI	YATR	6 cut(s)	119, 210, 312, 314, 342, 444
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	292
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	450, 508
GluI	GCNGC	1 cut(s)	422
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	1 cut(s)	215
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	3 cut(s)	147, 248, 337
HphI	GGTGA	1 cut(s)	335
Hpy188I	TCNGA	5 cut(s)	93, 159, 193, 243, 504
Hpy188III	TCNNGA	4 cut(s)	82, 144, 224, 252
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	3 cut(s)	31, 314, 322
HpyCH4IV	ACGT	2 cut(s)	195, 369
HpyF10VI	GCNNNNNNNGC	1 cut(s)	380
HpyF3I	CTNAG	2 cut(s)	15, 501
HpySE526I	ACGT	2 cut(s)	195, 369
Hsp92II	CATG	1 cut(s)	344
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
LmnI	GCTCC	2 cut(s)	42, 52
LpnPI	CCDG	9 cut(s)	47, 74, 129, 136, 153, 165, 229, 423, 473
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	450, 508
MaeII	ACGT	2 cut(s)	195, 369
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	6 cut(s)	90, 95, 142, 190, 304, 416
MboI	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
MboII	GAAGA	5 cut(s)	46, 116, 196, 267, 422
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	2 cut(s)	140, 188
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	2 cut(s)	400, 479
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	1 cut(s)	380
NdeII	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	2 cut(s)	190, 214
NmuCI	GTSAC	1 cut(s)	64
PdmI	GAANNNNTTC	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	147, 248
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	345
PmaCI	CACGTG	1 cut(s)	370
PmlI	CACGTG	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	345
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	60
PspCI	CACGTG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	190, 214
PspPI	GGNCC	1 cut(s)	213
PsuI	RGATCY	2 cut(s)	140, 188
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	368
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	6 cut(s)	88, 93, 140, 188, 302, 414
Sau96I	GGNCC	1 cut(s)	213
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	8 cut(s)	21, 57, 155, 198, 325, 372, 423, 465
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	1 cut(s)	299
SspMI	CTAG	2 cut(s)	450, 508
StyD4I	CCNGG	1 cut(s)	60
TaiI	ACGT	2 cut(s)	198, 372
TaqI	TCGA	2 cut(s)	81, 96
TasI	AATT	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	147, 248
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	1 cut(s)	352
XmnI	GAANNNNTTC	1 cut(s)	203
XspI	CTAG	2 cut(s)	450, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.