Rroxscaffold_4G00329740

Fruit protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0002199
Physical Location & Seq
Forward (+)
63082564 .. 63086002
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00329740.1

Sequence Viewer

Length: 576 bp
ATGTGGGTTGAAGAAGGGGGCGTTGTGGAGCTAACCCTGGTCACAGGGATAGGCTTCGAGATTGATCAGATCGAACCGCCAGAGAATTATCCTATGTTTCTTATTTTCACAACGGGATCTGGAATCAGGTCTCTGATTGCGTCAGGGTTTAATGCTGGTAAGCGATCTGACGTGAAACTCTTCTATGGGGCCAGAAATCTTGACAGAATGGCTTATCAGAGTGAATCAAGAAGAGTAGTACATGGTGGAGAGATGGGATCAGCCTTGGCAACAACGGGATCAATGTATATGATTGAAGATTGGAGTTGCCTTGCAGAGGGCATTACCATTATTTTCATACTTCCTGGAGCTTTCAATATTCATCACGAATTAAATGTTCTTGGAGTGGATTTGGAAAAGCTGGCAGAAATAGCAACAACATCATCTGCTTTGAAAGAGAAAGAGCTCAAGCTGCGTTTCAAAATAGCAGTAAGAATAGCCTCTTTTTTGACAGGGGACATATCTCTAGCATTTCCCAGCTTTATACTCAATACAACAGCAGAGGAATATCAATTGCCTAGAACTAGACATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_1

Protein Analysis

191

Amino Acids

21.12

Weight (kDa)

5.26

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AclWI GGATC 3 cut(s) 124, 265, 286
AfaI GTAC 1 cut(s) 240
AfiI CCNNNNNNNGG 1 cut(s) 316
AgsI TTSAA 5 cut(s) 11, 296, 355, 433, 460
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 2 cut(s) 36, 343
AluBI AGCT 6 cut(s) 31, 350, 400, 445, 451, 519
AluI AGCT 6 cut(s) 31, 350, 400, 445, 451, 519
Alw21I GWGCWC 1 cut(s) 447
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 124, 265, 286
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 451
Asp700I GAANNNNTTC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 438
BccI CCATC 1 cut(s) 247
BciT130I CCWGG 2 cut(s) 38, 345
BclI TGATCA 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 3 cut(s) 506, 558, 564
BisI GCNGC 1 cut(s) 452
BlsI GCNGC 1 cut(s) 453
Bme1390I CCNGG 2 cut(s) 38, 345
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 38, 345
BpmI CTGGAG 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 135
BsaJI CCNNGG 2 cut(s) 36, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 316
BseBI CCWGG 2 cut(s) 38, 345
BseDI CCNNGG 2 cut(s) 36, 264
BseLI CCNNNNNNNGG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 438
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 1 cut(s) 191
BsiHKAI GWGCWC 1 cut(s) 447
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 509
BsnI GGCC 1 cut(s) 191
Bso31I GGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 447
Bsp143I GATC 6 cut(s) 64, 69, 116, 164, 257, 278
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 191
BspLI GGNNCC 1 cut(s) 190
BspPI GGATC 3 cut(s) 124, 265, 286
BspTNI GGTCTC 1 cut(s) 135
BssECI CCNNGG 2 cut(s) 36, 264
BssMI GATC 6 cut(s) 64, 69, 116, 164, 257, 278
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 38, 345
Bst6I CTCTTC 2 cut(s) 185, 226
BstC8I GCNNGC 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 314
BstKTI GATC 6 cut(s) 67, 72, 119, 167, 260, 281
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 6 cut(s) 64, 69, 116, 164, 257, 278
BstMWI GCNNNNNNNGC 2 cut(s) 410, 451
BstNI CCWGG 2 cut(s) 38, 345
BstSCI CCNGG 2 cut(s) 36, 343
BstV1I GCAGC 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BsuRI GGCC 1 cut(s) 191
BtrI CACGTC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 402
Cfr13I GGNCC 1 cut(s) 189
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 239
CviAII CATG 1 cut(s) 242
CviQI GTAC 1 cut(s) 239
DpnI GATC 6 cut(s) 66, 71, 118, 166, 259, 280
DpnII GATC 6 cut(s) 64, 69, 116, 164, 257, 278
Eam1104I CTCTTC 2 cut(s) 185, 226
EarI CTCTTC 2 cut(s) 185, 226
Ecl136II GAGCTC 1 cut(s) 445
Eco130I CCWWGG 1 cut(s) 264
Eco24I GRGCYC 1 cut(s) 447
Eco31I GGTCTC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 445
EcoNI CCTNNNNNAGG 1 cut(s) 314
EcoRII CCWGG 2 cut(s) 36, 343
EcoT14I CCWWGG 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 447
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 245
FaiI YATR 9 cut(s) 95, 186, 243, 288, 290, 338, 500, 524, 570
FaqI GGGAC 1 cut(s) 509
FatI CATG 1 cut(s) 241
FbaI TGATCA 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 452
FriOI GRGCYC 1 cut(s) 447
Fsp4HI GCNGC 1 cut(s) 452
FspBI CTAG 3 cut(s) 506, 558, 564
GluI GCNGC 1 cut(s) 452
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 191
HgaI GACGC 1 cut(s) 129
Hin1II CATG 1 cut(s) 245
HinfI GANTC 2 cut(s) 123, 224
Hpy188I TCNGA 4 cut(s) 69, 135, 169, 219
Hpy188III TCNNGA 5 cut(s) 58, 120, 200, 228, 365
HpyAV CCTTC 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 451
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 245
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 6 cut(s) 64, 69, 116, 164, 257, 278
LmnI GCTCC 2 cut(s) 28, 347
Lsp1109I GCAGC 1 cut(s) 438
MaeI CTAG 3 cut(s) 506, 558, 564
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 40
MalI GATC 6 cut(s) 66, 71, 118, 166, 259, 280
MboI GATC 6 cut(s) 64, 69, 116, 164, 257, 278
MboII GAAGA 4 cut(s) 23, 172, 243, 308
MfeI CAATTG 1 cut(s) 551
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 1 cut(s) 447
MluCI AATT 4 cut(s) 85, 368, 551, 571
MnlI CCTC 3 cut(s) 310, 490, 535
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 3 cut(s) 150, 371, 574
MspR9I CCNGG 2 cut(s) 38, 345
MunI CAATTG 1 cut(s) 551
MvaI CCWGG 2 cut(s) 38, 345
MwoI GCNNNNNNNGC 2 cut(s) 410, 451
NdeII GATC 6 cut(s) 64, 69, 116, 164, 257, 278
NlaIII CATG 1 cut(s) 245
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 40
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 123, 224
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 1 cut(s) 453
Psp124BI GAGCTC 1 cut(s) 447
Psp6I CCWGG 2 cut(s) 36, 343
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 2 cut(s) 36, 343
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 116
RsaI GTAC 1 cut(s) 240
RsaNI GTAC 1 cut(s) 239
SacI GAGCTC 1 cut(s) 447
SaqAI TTAA 3 cut(s) 150, 371, 574
SatI GCNGC 1 cut(s) 452
Sau3AI GATC 6 cut(s) 64, 69, 116, 164, 257, 278
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 38, 345
SduI GDGCHC 1 cut(s) 447
SetI ASST 8 cut(s) 33, 131, 174, 352, 402, 447, 453, 521
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 85, 368, 551, 571
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 358
SspMI CTAG 3 cut(s) 506, 558, 564
SstI GAGCTC 1 cut(s) 447
StyD4I CCNGG 2 cut(s) 36, 343
StyI CCWWGG 1 cut(s) 264
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 57, 72
TasI AATT 4 cut(s) 85, 368, 551, 571
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 2 cut(s) 123, 224
Tru1I TTAA 3 cut(s) 150, 371, 574
Tru9I TTAA 3 cut(s) 150, 371, 574
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 2 cut(s) 325, 350
XagI CCTNNNNNAGG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 3 cut(s) 506, 558, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.